FFCP PHASE1:Mm9::chr5:84846393..84846414,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13839|HGNC=|MCL_coexpression_id=1791|UniProt=E9PUP7,Q60629,Q6PFV6,Q8C276,Q3V344,Q8CBY9|association_with_transcript=0bp_to_ENSMUST00000113411,ENSMUST00000136775,ENSMUST00000155469,NM_007937,uc008xwv.2,uc008xww.1,uc008xwx.1,uc008xwy.1,uc008xwz.1,uc008xxa.1,uc008xxb.1_5end|description=CAGE_peak_1_at_Epha5_5end|id=chr5:84846393..84846414,-|ontology_enrichment_celltype=CL:0000540!5.27e-16!33;CL:0000047!5.27e-16!33;CL:0000031!5.27e-16!33;CL:0000404!5.27e-16!33;CL:0000221!5.44e-15!44;CL:0000133!5.44e-15!44;CL:0002319!1.02e-14!43;CL:0000117!1.74e-14!23;CL:0000337!1.74e-14!23;CL:0000393!3.59e-11!39;CL:0000211!3.59e-11!39;CL:0000055!3.47e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.85e-18,33;CL:0000047,1.85e-18,33;CL:0000031,1.85e-18,33;CL:0000404,1.85e-18,33;CL:0000117,1.11e-16,23;CL:0000337,1.11e-16,23;CL:0000221,5.45e-16,44;CL:0000133,5.45e-16,44;CL:0002319,1.13e-15,43;CL:0000393,2.36e-13,39;CL:0000211,2.36e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.81e-31!102;UBERON:0000924!1.81e-31!102;UBERON:0006601!1.81e-31!102;UBERON:0000073!2.60e-30!75;UBERON:0001016!2.60e-30!75;UBERON:0001017!1.87e-29!73;UBERON:0005743!1.87e-29!73;UBERON:0002346!9.45e-29!71;UBERON:0003075!9.45e-29!71;UBERON:0007284!9.45e-29!71;UBERON:0000033!4.68e-28!63;UBERON:0001049!1.17e-23!52;UBERON:0005068!1.17e-23!52;UBERON:0006241!1.17e-23!52;UBERON:0007135!1.17e-23!52;UBERON:0003056!1.47e-23!49;UBERON:0000955!1.23e-22!50;UBERON:0006238!1.23e-22!50;UBERON:0002616!6.95e-22!49;UBERON:0002020!2.10e-20!34;UBERON:0003080!2.44e-19!40;UBERON:0002780!7.44e-19!39;UBERON:0001890!7.44e-19!39;UBERON:0006240!7.44e-19!39;UBERON:0002791!2.51e-17!29;UBERON:0003528!2.51e-17!29;UBERON:0001893!2.51e-17!29;UBERON:0000153!2.51e-14!94;UBERON:0007811!6.56e-14!86;UBERON:0000956!1.98e-13!21;UBERON:0001869!1.98e-13!21;UBERON:0000203!1.98e-13!21;UBERON:0002619!1.13e-10!17;UBERON:0002021!7.81e-08!10;UBERON:0000411!7.81e-08!10;UBERON:0001950!7.81e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.93e-33,95;UBERON:0000924,1.93e-33,95;UBERON:0006601,1.93e-33,95;UBERON:0001016,5.34e-33,75;UBERON:0001017,5.25e-32,73;UBERON:0002346,3.79e-31,64;UBERON:0003075,3.79e-31,64;UBERON:0007284,3.79e-31,64;UBERON:0000073,4.47e-27,54;UBERON:0003056,1.46e-26,49;UBERON:0010371,5.16e-26,73;UBERON:0001049,2.15e-25,52;UBERON:0005068,2.15e-25,52;UBERON:0006241,2.15e-25,52;UBERON:0007135,2.15e-25,52;UBERON:0002020,1.31e-23,34;UBERON:0000955,4.79e-22,47;UBERON:0006238,4.79e-22,47;UBERON:0003080,1.24e-21,40;UBERON:0002616,3.33e-21,46;UBERON:0002780,4.56e-21,39;UBERON:0001890,4.56e-21,39;UBERON:0006240,4.56e-21,39;UBERON:0010314,1.16e-20,92;UBERON:0003528,5.23e-20,29;UBERON:0002791,5.23e-20,29;UBERON:0001893,5.23e-20,29;UBERON:0000956,1.91e-15,21;UBERON:0001869,1.91e-15,21;UBERON:0000203,1.91e-15,21;UBERON:0002619,3.21e-12,17;UBERON:0002021,6.68e-09,10;UBERON:0000411,6.68e-09,10;UBERON:0001950,6.68e-09,10|phase1_expression=5.60520964866779,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.4632900514813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,1.31811709640683,1.1665793944457,0.279972843250725,0,0,0,0.336093799142464,0,0,0.515672092277442,23.2663929988537,22.2176211294254,19.0149421051854,1.35537812827653,0,0,0,0,4.19440154725767,2.30530983192933,113.954883927017,66.4229216591918,80.5544601975793,30.564655331207,21.4242484723065,76.0667863124865,49.2645721033735,96.5179725940522,36.3382407297983,29.4957750976784,30.5677001179925,18.5959665699573,13.2657083223494,19.7947080811569,20.1011759280994,16.8828783009504,23.2253336620751,53.3277739707339,39.0098405389542,23.4863301739879,2.57469057332826,61.5908214870302,0,0,0,0,0,0,1.12355536105401,0,0,0,6.90132756905734,0,0,0,0,0,0,1.37020655662872,0,1.63286352971307,1.90833859442749,2.43572382649713,1.84492397804847,3.16517545160507,3.64524992120685,1.25666591329675,0,0,0,1.61766849947409,0.441683036920787,1.93950101254089,0,3.51336956413857,5.65506108396329,0.510914110417183,0.11981512450592,0,0,14.9790639404823,13.7250180845588,30.0313901549746,32.3313235557634,27.6172693916757,15.3763152974074,21.9025705141473,0.611036183101898,0,0.252722758433675,3.57751155007006,6.76626303406059,14.2539304748753,21.6074555766419,22.4550178575215,29.5958771308276,34.4625907566246,37.5743915484513,9.05461797586555,0.431135985865684,3.21480336285293,2.81521798662318,3.72632745126877,3.33656699070717,3.83077383174383,3.70407845534298,0,0,0,0,0.207125772535502,0.234526059981096,0.900310307305074,1.42046841351126,0.393528463494808,0.308534225774757,0,0,0.116765342367169,0,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,43.5300193527743,69.2548041312584,0,0,0.639864751605702,1.16118335930219,1.54640953586512,0.403367049246685,0.22237804384487,0.570676878337677,0.474529061544512,0.823494773620054,0.251335208800269,1.59165177632921,1.16978452271472,0.898819408654221,0,0.199141273254367,0,0.456994050438915,0,0.40730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| ||
|EntrezGene=13839 | |||
|HGNC= | |||
|MCL_coexpression_id=1791 | |||
|UniProt=E9PUP7,Q60629,Q6PFV6,Q8C276,Q3V344,Q8CBY9 | |||
|association_with_transcript=0bp_to_ENSMUST00000113411,ENSMUST00000136775,ENSMUST00000155469,NM_007937,uc008xwv.2,uc008xww.1,uc008xwx.1,uc008xwy.1,uc008xwz.1,uc008xxa.1,uc008xxb.1_5end | |||
|description=CAGE_peak_1_at_Epha5_5end | |||
|id=chr5:84846393..84846414,- | |||
|ontology_enrichment_celltype=CL:0000540!5.27e-16!33;CL:0000047!5.27e-16!33;CL:0000031!5.27e-16!33;CL:0000404!5.27e-16!33;CL:0000221!5.44e-15!44;CL:0000133!5.44e-15!44;CL:0002319!1.02e-14!43;CL:0000117!1.74e-14!23;CL:0000337!1.74e-14!23;CL:0000393!3.59e-11!39;CL:0000211!3.59e-11!39;CL:0000055!3.47e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.85e-18,33;CL:0000047,1.85e-18,33;CL:0000031,1.85e-18,33;CL:0000404,1.85e-18,33;CL:0000117,1.11e-16,23;CL:0000337,1.11e-16,23;CL:0000221,5.45e-16,44;CL:0000133,5.45e-16,44;CL:0002319,1.13e-15,43;CL:0000393,2.36e-13,39;CL:0000211,2.36e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.81e-31!102;UBERON:0000924!1.81e-31!102;UBERON:0006601!1.81e-31!102;UBERON:0000073!2.60e-30!75;UBERON:0001016!2.60e-30!75;UBERON:0001017!1.87e-29!73;UBERON:0005743!1.87e-29!73;UBERON:0002346!9.45e-29!71;UBERON:0003075!9.45e-29!71;UBERON:0007284!9.45e-29!71;UBERON:0000033!4.68e-28!63;UBERON:0001049!1.17e-23!52;UBERON:0005068!1.17e-23!52;UBERON:0006241!1.17e-23!52;UBERON:0007135!1.17e-23!52;UBERON:0003056!1.47e-23!49;UBERON:0000955!1.23e-22!50;UBERON:0006238!1.23e-22!50;UBERON:0002616!6.95e-22!49;UBERON:0002020!2.10e-20!34;UBERON:0003080!2.44e-19!40;UBERON:0002780!7.44e-19!39;UBERON:0001890!7.44e-19!39;UBERON:0006240!7.44e-19!39;UBERON:0002791!2.51e-17!29;UBERON:0003528!2.51e-17!29;UBERON:0001893!2.51e-17!29;UBERON:0000153!2.51e-14!94;UBERON:0007811!6.56e-14!86;UBERON:0000956!1.98e-13!21;UBERON:0001869!1.98e-13!21;UBERON:0000203!1.98e-13!21;UBERON:0002619!1.13e-10!17;UBERON:0002021!7.81e-08!10;UBERON:0000411!7.81e-08!10;UBERON:0001950!7.81e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.93e-33,95;UBERON:0000924,1.93e-33,95;UBERON:0006601,1.93e-33,95;UBERON:0001016,5.34e-33,75;UBERON:0001017,5.25e-32,73;UBERON:0002346,3.79e-31,64;UBERON:0003075,3.79e-31,64;UBERON:0007284,3.79e-31,64;UBERON:0000073,4.47e-27,54;UBERON:0003056,1.46e-26,49;UBERON:0010371,5.16e-26,73;UBERON:0001049,2.15e-25,52;UBERON:0005068,2.15e-25,52;UBERON:0006241,2.15e-25,52;UBERON:0007135,2.15e-25,52;UBERON:0002020,1.31e-23,34;UBERON:0000955,4.79e-22,47;UBERON:0006238,4.79e-22,47;UBERON:0003080,1.24e-21,40;UBERON:0002616,3.33e-21,46;UBERON:0002780,4.56e-21,39;UBERON:0001890,4.56e-21,39;UBERON:0006240,4.56e-21,39;UBERON:0010314,1.16e-20,92;UBERON:0003528,5.23e-20,29;UBERON:0002791,5.23e-20,29;UBERON:0001893,5.23e-20,29;UBERON:0000956,1.91e-15,21;UBERON:0001869,1.91e-15,21;UBERON:0000203,1.91e-15,21;UBERON:0002619,3.21e-12,17;UBERON:0002021,6.68e-09,10;UBERON:0000411,6.68e-09,10;UBERON:0001950,6.68e-09,10 | |||
|phase1_expression=5.60520964866779,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.4632900514813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,1.31811709640683,1.1665793944457,0.279972843250725,0,0,0,0.336093799142464,0,0,0.515672092277442,23.2663929988537,22.2176211294254,19.0149421051854,1.35537812827653,0,0,0,0,4.19440154725767,2.30530983192933,113.954883927017,66.4229216591918,80.5544601975793,30.564655331207,21.4242484723065,76.0667863124865,49.2645721033735,96.5179725940522,36.3382407297983,29.4957750976784,30.5677001179925,18.5959665699573,13.2657083223494,19.7947080811569,20.1011759280994,16.8828783009504,23.2253336620751,53.3277739707339,39.0098405389542,23.4863301739879,2.57469057332826,61.5908214870302,0,0,0,0,0,0,1.12355536105401,0,0,0,6.90132756905734,0,0,0,0,0,0,1.37020655662872,0,1.63286352971307,1.90833859442749,2.43572382649713,1.84492397804847,3.16517545160507,3.64524992120685,1.25666591329675,0,0,0,1.61766849947409,0.441683036920787,1.93950101254089,0,3.51336956413857,5.65506108396329,0.510914110417183,0.11981512450592,0,0,14.9790639404823,13.7250180845588,30.0313901549746,32.3313235557634,27.6172693916757,15.3763152974074,21.9025705141473,0.611036183101898,0,0.252722758433675,3.57751155007006,6.76626303406059,14.2539304748753,21.6074555766419,22.4550178575215,29.5958771308276,34.4625907566246,37.5743915484513,9.05461797586555,0.431135985865684,3.21480336285293,2.81521798662318,3.72632745126877,3.33656699070717,3.83077383174383,3.70407845534298,0,0,0,0,0.207125772535502,0.234526059981096,0.900310307305074,1.42046841351126,0.393528463494808,0.308534225774757,0,0,0.116765342367169,0,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,43.5300193527743,69.2548041312584,0,0,0.639864751605702,1.16118335930219,1.54640953586512,0.403367049246685,0.22237804384487,0.570676878337677,0.474529061544512,0.823494773620054,0.251335208800269,1.59165177632921,1.16978452271472,0.898819408654221,0,0.199141273254367,0,0.456994050438915,0,0.407302655690628,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65287976478679,4.23708938749267,3.56464680127895,2.81628297946203,2.34508760418542,0.238043640886014,0.585400943573396,0.945810864637146,0.221464689648775,0.478364305972461,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,15.412856638828,13.7137673312878,0,0,3.15508219416257,5.0757036758563,4.09304455692318,5.01834475700359,10.0259403337077,21.7968928707401,3.64329631507405,4.9683495844923,3.95287777946523,67.1561551321577,0.709700426041343,0.178065603667255,0.81443479676788,0.494910368917606,5.30980553359851,0,0,0.377210159511796,0,0.307435147943927,1.29214146584111,0.363533729477506,0.356497378384721,0.632073515871632,0,1.03135543248187,8.17055053809091,4.68158844481407,0.776152102696527,3.21505552547388,5.32020700926821,5.88617098086833,5.59466670047211,2.43571959291679,0.23467170806371,0,0.220528398054962,0,0.161464426695906,0.422190474497091,0,0.656563598980245,0,11.4963687246516,0,0.206386867963223,0.185194527369712,0,0,0,0.169978429993855,0.279902904647316,0.138199973804424,0,1.42351197111511,4.06638934253697,3.13215488383224,2.50905955217362,3.05707589244649,1.48350781023303,1.23980183588004,0.26175594198403,0.129614973291793,9.94142900939081,0,0.299033092087958,0,0.194451188344048,0.258319646955462,1.18269287843545,0.469428954583016,1.0416350787516,0.104859344425711,0,0,0,0.608175645870493,0.513554785824136,0.129920822977795,0.537080087002444,0,0.240390899039938,0,0,0,0.100826185136841,0.194915761479505,0,0,2.49403421976732,0,0,0,0.19318959403219,0,0,0.214368379079066,0,40.0973808258117,49.7151255427751,47.5503276154699,75.9591065959099,45.2154463048624,37.769694869485,44.5514850152992,48.1843687449916,37.1576775367048,38.3142630696347,2.59468368960442,11.1726964552289,6.82934423016537,8.0225216632537,6.49800804146745,9.74370594785075,8.00088220085815,10.3017528619447,4.81378814387723,11.8767689528985,9.63221339582911,9.99719609346204,8.98958471710871,9.28364709870604,9.70659425349864,11.9073422820768,9.73428337936786,7.5234595980845,8.24171801606613,5.88795680537589,7.20025430009372,7.63145966485151,8.58370283810355,8.1393993314104,7.52875043322645,8.96914843651771,6.21955107767427,6.57674278594607,7.74083448921412,10.1005608898393,9.96534152243063,10.2444661670586,6.54769669071503,7.59190521811233,8.10207766120794,10.7418548513317,7.48581147025307,6.23126056740065,2.86932498103265,3.08827986767322,1.39120701372253 | |||
|short_description=p1@Epha5 | |||
}} |
Revision as of 08:06, 14 September 2013
Short description: | p1@Epha5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Epha5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1791 |
Association with transcript: | 0bp_to_ENSMUST00000113411, ENSMUST00000136775, ENSMUST00000155469, NM_007937, uc008xwv.2, uc008xww.1, uc008xwx.1, uc008xwy.1, uc008xwz.1, uc008xxa.1, uc008xxb.1_5end |
EntrezGene: | Epha5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.85e-18 | 33 |
neuronal stem cell | 1.85e-18 | 33 |
neuroblast | 1.85e-18 | 33 |
electrically signaling cell | 1.85e-18 | 33 |
CNS neuron (sensu Vertebrata) | 1.11e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-16 | 23 |
ectodermal cell | 5.45e-16 | 44 |
neurectodermal cell | 5.45e-16 | 44 |
neural cell | 1.13e-15 | 43 |
electrically responsive cell | 2.36e-13 | 39 |
electrically active cell | 2.36e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.93e-33 | 95 |
ectoderm | 1.93e-33 | 95 |
presumptive ectoderm | 1.93e-33 | 95 |
nervous system | 5.34e-33 | 75 |
central nervous system | 5.25e-32 | 73 |
neurectoderm | 3.79e-31 | 64 |
neural plate | 3.79e-31 | 64 |
presumptive neural plate | 3.79e-31 | 64 |
regional part of nervous system | 4.47e-27 | 54 |
pre-chordal neural plate | 1.46e-26 | 49 |
ecto-epithelium | 5.16e-26 | 73 |
neural tube | 2.15e-25 | 52 |
neural rod | 2.15e-25 | 52 |
future spinal cord | 2.15e-25 | 52 |
neural keel | 2.15e-25 | 52 |
gray matter | 1.31e-23 | 34 |
brain | 4.79e-22 | 47 |
future brain | 4.79e-22 | 47 |
anterior neural tube | 1.24e-21 | 40 |
regional part of brain | 3.33e-21 | 46 |
regional part of forebrain | 4.56e-21 | 39 |
forebrain | 4.56e-21 | 39 |
future forebrain | 4.56e-21 | 39 |
structure with developmental contribution from neural crest | 1.16e-20 | 92 |
brain grey matter | 5.23e-20 | 29 |
regional part of telencephalon | 5.23e-20 | 29 |
telencephalon | 5.23e-20 | 29 |
cerebral cortex | 1.91e-15 | 21 |
cerebral hemisphere | 1.91e-15 | 21 |
pallium | 1.91e-15 | 21 |
regional part of cerebral cortex | 3.21e-12 | 17 |
occipital lobe | 6.68e-09 | 10 |
visual cortex | 6.68e-09 | 10 |
neocortex | 6.68e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.