FFCP PHASE1:Mm9::chr6:86354214..86354234,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21841|HGNC=|MCL_coexpression_id=22|UniProt=P52912,D3Z4H6,Q80ZW7,Q8CII5,Q564E7|association_with_transcript=1bp_to_ENSMUST00000095753,ENSMUST00000095754,NM_001164078,NM_001164079,NM_011585,uc009crp.2,uc009crq.2,uc009crr.2,uc012eok.1_5end|description=CAGE_peak_3_at_Tia1_5end|id=chr6:86354214..86354234,+|ontology_enrichment_celltype=CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000393!6.52e-14!39;CL:0000211!6.52e-14!39;CL:0000117!4.69e-11!23;CL:0000337!4.69e-11!23;CL:0002319!2.93e-10!43;CL:0000221!4.07e-10!44;CL:0000133!4.07e-10!44;CL:0000055!2.08e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.43e-14,33;CL:0000047,1.43e-14,33;CL:0000031,1.43e-14,33;CL:0000404,1.43e-14,33;CL:0000393,5.76e-14,39;CL:0000211,5.76e-14,39;CL:0000117,4.27e-11,23;CL:0000337,4.27e-11,23;CL:0002319,2.12e-10,43;CL:0000221,2.96e-10,44;CL:0000133,2.96e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.18e-23!75;UBERON:0001016!7.18e-23!75;UBERON:0001017!7.26e-23!73;UBERON:0005743!7.26e-23!73;UBERON:0002346!1.10e-19!71;UBERON:0003075!1.10e-19!71;UBERON:0007284!1.10e-19!71;UBERON:0004121!1.18e-19!102;UBERON:0000924!1.18e-19!102;UBERON:0006601!1.18e-19!102;UBERON:0001049!3.79e-18!52;UBERON:0005068!3.79e-18!52;UBERON:0006241!3.79e-18!52;UBERON:0007135!3.79e-18!52;UBERON:0003056!1.27e-17!49;UBERON:0000033!1.65e-17!63;UBERON:0000955!8.83e-17!50;UBERON:0006238!8.83e-17!50;UBERON:0002616!2.09e-16!49;UBERON:0002780!6.52e-16!39;UBERON:0001890!6.52e-16!39;UBERON:0006240!6.52e-16!39;UBERON:0003080!8.11e-16!40;UBERON:0000153!1.48e-14!94;UBERON:0002020!2.56e-14!34;UBERON:0007811!1.33e-13!86;UBERON:0002791!2.29e-12!29;UBERON:0003528!2.29e-12!29;UBERON:0001893!2.29e-12!29;UBERON:0000956!2.59e-09!21;UBERON:0001869!2.59e-09!21;UBERON:0000203!2.59e-09!21;UBERON:0002619!3.45e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.31e-23,75;UBERON:0001017,4.35e-23,73;UBERON:0002346,1.31e-21,64;UBERON:0003075,1.31e-21,64;UBERON:0007284,1.31e-21,64;UBERON:0004121,7.29e-21,95;UBERON:0000924,7.29e-21,95;UBERON:0006601,7.29e-21,95;UBERON:0010371,9.86e-19,73;UBERON:0000073,1.40e-18,54;UBERON:0001049,3.21e-18,52;UBERON:0005068,3.21e-18,52;UBERON:0006241,3.21e-18,52;UBERON:0007135,3.21e-18,52;UBERON:0003056,1.08e-17,49;UBERON:0000955,3.82e-16,47;UBERON:0006238,3.82e-16,47;UBERON:0002780,5.64e-16,39;UBERON:0001890,5.64e-16,39;UBERON:0006240,5.64e-16,39;UBERON:0003080,7.03e-16,40;UBERON:0002616,8.99e-16,46;UBERON:0002020,2.25e-14,34;UBERON:0010314,8.34e-14,92;UBERON:0003528,2.06e-12,29;UBERON:0002791,2.06e-12,29;UBERON:0001893,2.06e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0002619,3.26e-07,17|phase1_expression=4.00372117761985,1.39590163055744,0.454999239389536,0.60492842261366,3.00537437967808,0.503637815735669,1.63528848416868,1.03298658753261,0.703943610758334,1.87251621057595,0.513653904676515,0.797721589953364,1.02720437958723,0.699363219351979,0.666219523631325,0.809901069559304,0,2.20823515750766,1.50825876966313,1.69755860719212,1.87095238332354,3.47518329203099,4.70159620450084,1.11994695955385,2.98232065387321,1.14846392823004,1.29228598847722,1.29282739611533,1.33016393619462,1.51218077855958,1.99557459589774,4.44521471421742,0.61506478758457,0,0.577703239502549,0.831173226792462,1.42918549383658,2.51118978442145,1.5626706890476,1.0470474879476,1.17646297606203,1.36609096991689,0.485510353031154,3.39921408534059,3.14268486780495,4.77221555620372,3.9119567217402,1.74420125104357,1.09843091367236,1.36100929351998,1.1198913730029,0,1.51004345451963,2.90144856804538,0.672187598284928,1.28629718017973,2.29226751951005,3.09403255366465,8.29497489524351,10.5798195854407,12.6766280701236,2.71075625655306,1.77858959222228,1.3498495759221,0.988866362566974,1.4209602298922,2.09720077362883,1.92109152660777,8.19147937236973,7.42532660824299,8.2026734927039,5.14171771926846,3.97563373712904,9.30930074033651,9.10531974673246,7.35375029288017,7.70811166995721,3.57524546638526,2.91852413186863,10.6827893061457,6.86157327018072,6.77187381723788,2.51264699101243,4.50210088025344,3.0559649555362,4.41942878210502,5.12538050876771,5.96478226640962,2.65041676666144,3.17400552448499,0.869593466105033,0,0,0.539703191637817,0,1.34408066129201,0.983110940922263,2.21559419351475,1.55871602761721,1.41335829804136,2.39433813620357,1.28326477414318,2.54805239706646,0,1.73192832808971,2.02687892380079,1.01104889002957,0.91347103775248,1.03575153458869,1.48442139064825,3.99016251562112,2.13125834818499,1.15307748628029,2.86373017049983,2.70454026412121,1.63366568728578,1.23597483867187,0.578397427679647,0.884610551949874,1.94120219936891,1.32504911076236,1.45462575940567,0,3.22058876712702,2.72280718857492,1.27728527604296,1.31796636956512,1.19980546198682,2.03312363316904,2.99581278809645,7.77751024791665,9.67538511269056,4.51943232499919,6.13717097592793,3.32460871295296,7.30085683804909,2.1386266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| ||
|EntrezGene=21841 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=P52912,D3Z4H6,Q80ZW7,Q8CII5,Q564E7 | |||
|association_with_transcript=1bp_to_ENSMUST00000095753,ENSMUST00000095754,NM_001164078,NM_001164079,NM_011585,uc009crp.2,uc009crq.2,uc009crr.2,uc012eok.1_5end | |||
|description=CAGE_peak_3_at_Tia1_5end | |||
|id=chr6:86354214..86354234,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000393!6.52e-14!39;CL:0000211!6.52e-14!39;CL:0000117!4.69e-11!23;CL:0000337!4.69e-11!23;CL:0002319!2.93e-10!43;CL:0000221!4.07e-10!44;CL:0000133!4.07e-10!44;CL:0000055!2.08e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.43e-14,33;CL:0000047,1.43e-14,33;CL:0000031,1.43e-14,33;CL:0000404,1.43e-14,33;CL:0000393,5.76e-14,39;CL:0000211,5.76e-14,39;CL:0000117,4.27e-11,23;CL:0000337,4.27e-11,23;CL:0002319,2.12e-10,43;CL:0000221,2.96e-10,44;CL:0000133,2.96e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.18e-23!75;UBERON:0001016!7.18e-23!75;UBERON:0001017!7.26e-23!73;UBERON:0005743!7.26e-23!73;UBERON:0002346!1.10e-19!71;UBERON:0003075!1.10e-19!71;UBERON:0007284!1.10e-19!71;UBERON:0004121!1.18e-19!102;UBERON:0000924!1.18e-19!102;UBERON:0006601!1.18e-19!102;UBERON:0001049!3.79e-18!52;UBERON:0005068!3.79e-18!52;UBERON:0006241!3.79e-18!52;UBERON:0007135!3.79e-18!52;UBERON:0003056!1.27e-17!49;UBERON:0000033!1.65e-17!63;UBERON:0000955!8.83e-17!50;UBERON:0006238!8.83e-17!50;UBERON:0002616!2.09e-16!49;UBERON:0002780!6.52e-16!39;UBERON:0001890!6.52e-16!39;UBERON:0006240!6.52e-16!39;UBERON:0003080!8.11e-16!40;UBERON:0000153!1.48e-14!94;UBERON:0002020!2.56e-14!34;UBERON:0007811!1.33e-13!86;UBERON:0002791!2.29e-12!29;UBERON:0003528!2.29e-12!29;UBERON:0001893!2.29e-12!29;UBERON:0000956!2.59e-09!21;UBERON:0001869!2.59e-09!21;UBERON:0000203!2.59e-09!21;UBERON:0002619!3.45e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.31e-23,75;UBERON:0001017,4.35e-23,73;UBERON:0002346,1.31e-21,64;UBERON:0003075,1.31e-21,64;UBERON:0007284,1.31e-21,64;UBERON:0004121,7.29e-21,95;UBERON:0000924,7.29e-21,95;UBERON:0006601,7.29e-21,95;UBERON:0010371,9.86e-19,73;UBERON:0000073,1.40e-18,54;UBERON:0001049,3.21e-18,52;UBERON:0005068,3.21e-18,52;UBERON:0006241,3.21e-18,52;UBERON:0007135,3.21e-18,52;UBERON:0003056,1.08e-17,49;UBERON:0000955,3.82e-16,47;UBERON:0006238,3.82e-16,47;UBERON:0002780,5.64e-16,39;UBERON:0001890,5.64e-16,39;UBERON:0006240,5.64e-16,39;UBERON:0003080,7.03e-16,40;UBERON:0002616,8.99e-16,46;UBERON:0002020,2.25e-14,34;UBERON:0010314,8.34e-14,92;UBERON:0003528,2.06e-12,29;UBERON:0002791,2.06e-12,29;UBERON:0001893,2.06e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0002619,3.26e-07,17 | |||
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| |||
|short_description=p3@Tia1 | |||
}} |
Revision as of 10:49, 14 September 2013
Short description: | p3@Tia1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tia1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 1bp_to_ENSMUST00000095753, ENSMUST00000095754, NM_001164078, NM_001164079, NM_011585, uc009crp.2, uc009crq.2, uc009crr.2, uc012eok.1_5end |
EntrezGene: | Tia1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.43e-14 | 33 |
neuronal stem cell | 1.43e-14 | 33 |
neuroblast | 1.43e-14 | 33 |
electrically signaling cell | 1.43e-14 | 33 |
electrically responsive cell | 5.76e-14 | 39 |
electrically active cell | 5.76e-14 | 39 |
CNS neuron (sensu Vertebrata) | 4.27e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.27e-11 | 23 |
neural cell | 2.12e-10 | 43 |
ectodermal cell | 2.96e-10 | 44 |
neurectodermal cell | 2.96e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.31e-23 | 75 |
central nervous system | 4.35e-23 | 73 |
neurectoderm | 1.31e-21 | 64 |
neural plate | 1.31e-21 | 64 |
presumptive neural plate | 1.31e-21 | 64 |
ectoderm-derived structure | 7.29e-21 | 95 |
ectoderm | 7.29e-21 | 95 |
presumptive ectoderm | 7.29e-21 | 95 |
ecto-epithelium | 9.86e-19 | 73 |
regional part of nervous system | 1.40e-18 | 54 |
neural tube | 3.21e-18 | 52 |
neural rod | 3.21e-18 | 52 |
future spinal cord | 3.21e-18 | 52 |
neural keel | 3.21e-18 | 52 |
pre-chordal neural plate | 1.08e-17 | 49 |
brain | 3.82e-16 | 47 |
future brain | 3.82e-16 | 47 |
regional part of forebrain | 5.64e-16 | 39 |
forebrain | 5.64e-16 | 39 |
future forebrain | 5.64e-16 | 39 |
anterior neural tube | 7.03e-16 | 40 |
regional part of brain | 8.99e-16 | 46 |
gray matter | 2.25e-14 | 34 |
structure with developmental contribution from neural crest | 8.34e-14 | 92 |
brain grey matter | 2.06e-12 | 29 |
regional part of telencephalon | 2.06e-12 | 29 |
telencephalon | 2.06e-12 | 29 |
cerebral cortex | 2.39e-09 | 21 |
cerebral hemisphere | 2.39e-09 | 21 |
pallium | 2.39e-09 | 21 |
regional part of cerebral cortex | 3.26e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.