FFCP PHASE1:Mm9::chr9:121614114..121614159,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=215474|HGNC=|MCL_coexpression_id=2121|UniProt=Q8BXT9|association_with_transcript=0bp_to_ENSMUST00000078547,NM_001164562,NM_178677,uc009sdm.2,uc009sdn.2_5end|description=CAGE_peak_1_at_Sec22c_5end|id=chr9:121614114..121614159,-|ontology_enrichment_celltype=CL:0000221!1.76e-17!44;CL:0000133!1.76e-17!44;CL:0002319!3.05e-17!43;CL:0000540!4.38e-15!33;CL:0000047!4.38e-15!33;CL:0000031!4.38e-15!33;CL:0000404!4.38e-15!33;CL:0000055!4.72e-15!50;CL:0000117!7.02e-14!23;CL:0000337!7.02e-14!23;CL:0000393!1.50e-13!39;CL:0000211!1.50e-13!39;CL:0002321!3.49e-07!70;CL:0000220!3.49e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.76e-17,44;CL:0000133,1.76e-17,44;CL:0002319,3.05e-17,43;CL:0000540,4.38e-15,33;CL:0000047,4.38e-15,33;CL:0000031,4.38e-15,33;CL:0000404,4.38e-15,33;CL:0000117,7.02e-14,23;CL:0000337,7.02e-14,23;CL:0000393,1.50e-13,39;CL:0000211,1.50e-13,39;CL:0002321,3.47e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.74e-34!75;UBERON:0001016!3.74e-34!75;UBERON:0001017!6.11e-34!73;UBERON:0005743!6.11e-34!73;UBERON:0004121!1.82e-30!102;UBERON:0000924!1.82e-30!102;UBERON:0006601!1.82e-30!102;UBERON:0000033!6.15e-27!63;UBERON:0001049!3.50e-25!52;UBERON:0005068!3.50e-25!52;UBERON:0006241!3.50e-25!52;UBERON:0007135!3.50e-25!52;UBERON:0000955!9.13e-25!50;UBERON:0006238!9.13e-25!50;UBERON:0002616!4.70e-24!49;UBERON:0003056!4.70e-23!49;UBERON:0002346!1.76e-22!71;UBERON:0003075!1.76e-22!71;UBERON:0007284!1.76e-22!71;UBERON:0003080!3.25e-20!40;UBERON:0002780!1.44e-19!39;UBERON:0001890!1.44e-19!39;UBERON:0006240!1.44e-19!39;UBERON:0002020!1.03e-18!34;UBERON:0000153!4.93e-18!94;UBERON:0007811!9.59e-18!86;UBERON:0002791!2.03e-16!29;UBERON:0003528!2.03e-16!29;UBERON:0001893!2.03e-16!29;UBERON:0000956!6.65e-12!21;UBERON:0001869!6.65e-12!21;UBERON:0000203!6.65e-12!21;UBERON:0002619!2.03e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.61e-36,95;UBERON:0000924,2.61e-36,95;UBERON:0006601,2.61e-36,95;UBERON:0001016,3.74e-34,75;UBERON:0001017,6.11e-34,73;UBERON:0002346,8.91e-29,64;UBERON:0003075,8.91e-29,64;UBERON:0007284,8.91e-29,64;UBERON:0010371,3.35e-28,73;UBERON:0000073,1.32e-26,54;UBERON:0001049,3.50e-25,52;UBERON:0005068,3.50e-25,52;UBERON:0006241,3.50e-25,52;UBERON:0007135,3.50e-25,52;UBERON:0003056,4.70e-23,49;UBERON:0000955,7.78e-23,47;UBERON:0006238,7.78e-23,47;UBERON:0002616,3.89e-22,46;UBERON:0003080,3.25e-20,40;UBERON:0002780,1.44e-19,39;UBERON:0001890,1.44e-19,39;UBERON:0006240,1.44e-19,39;UBERON:0002020,1.03e-18,34;UBERON:0003528,2.03e-16,29;UBERON:0002791,2.03e-16,29;UBERON:0001893,2.03e-16,29;UBERON:0010314,1.22e-14,92;UBERON:0000956,6.65e-12,21;UBERON:0001869,6.65e-12,21;UBERON:0000203,6.65e-12,21;UBERON:0002619,2.03e-09,17;UBERON:0011216,5.54e-09,194|phase1_expression=12.4916100741739,7.67745896806594,9.55498402718026,7.56160528267075,8.01433167914156,4.70061961353291,5.84031601488814,9.03863264091034,0.703943610758334,0.936258105287974,1.02730780935303,1.43589886191606,7.36163138704185,11.0149707047937,5.66286595086627,5.4668322195253,6.29605690315332,6.15151222448563,4.9361196098066,3.39511721438424,8.07911256435163,5.65958421845046,4.70159620450084,6.87967418011649,8.48814339948529,6.31655160526522,7.32295393470427,4.30942465371778,5.51067916423484,9.07308467135751,7.31710685162506,1.90509202037889,1.84519436275371,0,3.17736781726402,3.49092755252834,2.6542016314108,35.5751886126372,21.8773896466664,22.5115209908733,38.2350467220159,34.8353197328807,40.7828696546169,9.81995180209503,9.32667767219534,6.42413632565885,9.38869613217647,12.6454590700659,9.44650585758229,14.1933826324227,15.9584520652913,17.2503077237966,3.85899993932794,4.35217285206807,5.37750078627942,6.94600477297057,11.747871037489,8.25075347643908,28.7289374420629,21.6886301501533,32.3254015788151,8.80995783379743,14.2287167377782,4.94944844504769,7.9109309005358,7.104801149461,14.9800055259202,13.4476406862544,26.8556095878957,28.8912708029818,27.1319200143283,19.4242669394586,14.5773237028065,24.2531782445609,21.5652309791032,42.284064184061,33.0347642998166,21.3237854602263,22.8873734551803,25.190280956467,21.8655468209759,20.8365348222704,22.3346399201105,22.5105044012672,21.697351184307,22.0971439105251,17.6540884190888,19.5719418116566,9.84440513331393,10.8823046553771,4.92769630792852,5.16254326188832,3.39985666853875,6.47643829965381,11.0461990966104,15.6809410484067,8.84799846830037,4.77204903218562,2.85764605063156,2.47337702157238,12.1125341007945,1.28326477414318,7.64415719119937,0,7.79367747640371,4.30711771307668,2.52762222507392,5.93756174539112,5.17875767294343,6.08612770165782,6.07198643681475,6.39377504455497,5.5347719341454,5.57673770044703,4.11560474974967,5.15233024451669,12.8541383221874,5.35017620603673,7.07688441559899,5.3383060482645,5.52103796150984,8.24287930329878,1.86391761218122,13.7606974595427,19.8974371472782,9.19645398750929,4.55297473122497,2.99951365496704,4.70159840170339,24.8652461412006,26.5350349634803,23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| ||
|EntrezGene=215474 | |||
|HGNC= | |||
|MCL_coexpression_id=2121 | |||
|UniProt=Q8BXT9 | |||
|association_with_transcript=0bp_to_ENSMUST00000078547,NM_001164562,NM_178677,uc009sdm.2,uc009sdn.2_5end | |||
|description=CAGE_peak_1_at_Sec22c_5end | |||
|id=chr9:121614114..121614159,- | |||
|ontology_enrichment_celltype=CL:0000221!1.76e-17!44;CL:0000133!1.76e-17!44;CL:0002319!3.05e-17!43;CL:0000540!4.38e-15!33;CL:0000047!4.38e-15!33;CL:0000031!4.38e-15!33;CL:0000404!4.38e-15!33;CL:0000055!4.72e-15!50;CL:0000117!7.02e-14!23;CL:0000337!7.02e-14!23;CL:0000393!1.50e-13!39;CL:0000211!1.50e-13!39;CL:0002321!3.49e-07!70;CL:0000220!3.49e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.76e-17,44;CL:0000133,1.76e-17,44;CL:0002319,3.05e-17,43;CL:0000540,4.38e-15,33;CL:0000047,4.38e-15,33;CL:0000031,4.38e-15,33;CL:0000404,4.38e-15,33;CL:0000117,7.02e-14,23;CL:0000337,7.02e-14,23;CL:0000393,1.50e-13,39;CL:0000211,1.50e-13,39;CL:0002321,3.47e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.74e-34!75;UBERON:0001016!3.74e-34!75;UBERON:0001017!6.11e-34!73;UBERON:0005743!6.11e-34!73;UBERON:0004121!1.82e-30!102;UBERON:0000924!1.82e-30!102;UBERON:0006601!1.82e-30!102;UBERON:0000033!6.15e-27!63;UBERON:0001049!3.50e-25!52;UBERON:0005068!3.50e-25!52;UBERON:0006241!3.50e-25!52;UBERON:0007135!3.50e-25!52;UBERON:0000955!9.13e-25!50;UBERON:0006238!9.13e-25!50;UBERON:0002616!4.70e-24!49;UBERON:0003056!4.70e-23!49;UBERON:0002346!1.76e-22!71;UBERON:0003075!1.76e-22!71;UBERON:0007284!1.76e-22!71;UBERON:0003080!3.25e-20!40;UBERON:0002780!1.44e-19!39;UBERON:0001890!1.44e-19!39;UBERON:0006240!1.44e-19!39;UBERON:0002020!1.03e-18!34;UBERON:0000153!4.93e-18!94;UBERON:0007811!9.59e-18!86;UBERON:0002791!2.03e-16!29;UBERON:0003528!2.03e-16!29;UBERON:0001893!2.03e-16!29;UBERON:0000956!6.65e-12!21;UBERON:0001869!6.65e-12!21;UBERON:0000203!6.65e-12!21;UBERON:0002619!2.03e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.61e-36,95;UBERON:0000924,2.61e-36,95;UBERON:0006601,2.61e-36,95;UBERON:0001016,3.74e-34,75;UBERON:0001017,6.11e-34,73;UBERON:0002346,8.91e-29,64;UBERON:0003075,8.91e-29,64;UBERON:0007284,8.91e-29,64;UBERON:0010371,3.35e-28,73;UBERON:0000073,1.32e-26,54;UBERON:0001049,3.50e-25,52;UBERON:0005068,3.50e-25,52;UBERON:0006241,3.50e-25,52;UBERON:0007135,3.50e-25,52;UBERON:0003056,4.70e-23,49;UBERON:0000955,7.78e-23,47;UBERON:0006238,7.78e-23,47;UBERON:0002616,3.89e-22,46;UBERON:0003080,3.25e-20,40;UBERON:0002780,1.44e-19,39;UBERON:0001890,1.44e-19,39;UBERON:0006240,1.44e-19,39;UBERON:0002020,1.03e-18,34;UBERON:0003528,2.03e-16,29;UBERON:0002791,2.03e-16,29;UBERON:0001893,2.03e-16,29;UBERON:0010314,1.22e-14,92;UBERON:0000956,6.65e-12,21;UBERON:0001869,6.65e-12,21;UBERON:0000203,6.65e-12,21;UBERON:0002619,2.03e-09,17;UBERON:0011216,5.54e-09,194 | |||
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| |||
|short_description=p1@Sec22c | |||
}} |
Revision as of 17:12, 14 September 2013
Short description: | p1@Sec22c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sec22c_5end |
Coexpression cluster: | MCL_coexpression_mm9:2121 |
Association with transcript: | 0bp_to_ENSMUST00000078547, NM_001164562, NM_178677, uc009sdm.2, uc009sdn.2_5end |
EntrezGene: | Sec22c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.76e-17 | 44 |
neurectodermal cell | 1.76e-17 | 44 |
neural cell | 3.05e-17 | 43 |
neuron | 4.38e-15 | 33 |
neuronal stem cell | 4.38e-15 | 33 |
neuroblast | 4.38e-15 | 33 |
electrically signaling cell | 4.38e-15 | 33 |
CNS neuron (sensu Vertebrata) | 7.02e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.02e-14 | 23 |
electrically responsive cell | 1.50e-13 | 39 |
electrically active cell | 1.50e-13 | 39 |
embryonic cell | 3.47e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.61e-36 | 95 |
ectoderm | 2.61e-36 | 95 |
presumptive ectoderm | 2.61e-36 | 95 |
nervous system | 3.74e-34 | 75 |
central nervous system | 6.11e-34 | 73 |
neurectoderm | 8.91e-29 | 64 |
neural plate | 8.91e-29 | 64 |
presumptive neural plate | 8.91e-29 | 64 |
ecto-epithelium | 3.35e-28 | 73 |
regional part of nervous system | 1.32e-26 | 54 |
neural tube | 3.50e-25 | 52 |
neural rod | 3.50e-25 | 52 |
future spinal cord | 3.50e-25 | 52 |
neural keel | 3.50e-25 | 52 |
pre-chordal neural plate | 4.70e-23 | 49 |
brain | 7.78e-23 | 47 |
future brain | 7.78e-23 | 47 |
regional part of brain | 3.89e-22 | 46 |
anterior neural tube | 3.25e-20 | 40 |
regional part of forebrain | 1.44e-19 | 39 |
forebrain | 1.44e-19 | 39 |
future forebrain | 1.44e-19 | 39 |
gray matter | 1.03e-18 | 34 |
brain grey matter | 2.03e-16 | 29 |
regional part of telencephalon | 2.03e-16 | 29 |
telencephalon | 2.03e-16 | 29 |
structure with developmental contribution from neural crest | 1.22e-14 | 92 |
cerebral cortex | 6.65e-12 | 21 |
cerebral hemisphere | 6.65e-12 | 21 |
pallium | 6.65e-12 | 21 |
regional part of cerebral cortex | 2.03e-09 | 17 |
organ system subdivision | 5.54e-09 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.