FFCP PHASE1:Mm9::chr9:56483431..56483498,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235402|HGNC=|MCL_coexpression_id=1|UniProt=A9DA50|association_with_transcript=0bp_to_ENSMUST00000114256_5end|description=CAGE_peak_1_at_Lingo1_5end|id=chr9:56483431..56483498,-|ontology_enrichment_celltype=CL:0000117!1.33e-13!23;CL:0000337!1.33e-13!23;CL:0002319!8.17e-12!43;CL:0000221!1.46e-11!44;CL:0000133!1.46e-11!44;CL:0000055!7.37e-11!50;CL:0000540!5.55e-09!33;CL:0000047!5.55e-09!33;CL:0000031!5.55e-09!33;CL:0000404!5.55e-09!33;CL:0000393!8.80e-09!39;CL:0000211!8.80e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.42e-14,23;CL:0000337,2.42e-14,23;CL:0002319,2.93e-11,43;CL:0000221,5.09e-11,44;CL:0000133,5.09e-11,44;CL:0000393,2.53e-08,39;CL:0000211,2.53e-08,39;CL:0000540,2.60e-08,33;CL:0000047,2.60e-08,33;CL:0000031,2.60e-08,33;CL:0000404,2.60e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.99e-27!75;UBERON:0001016!4.99e-27!75;UBERON:0001017!1.88e-26!73;UBERON:0005743!1.88e-26!73;UBERON:0001049!3.81e-25!52;UBERON:0005068!3.81e-25!52;UBERON:0006241!3.81e-25!52;UBERON:0007135!3.81e-25!52;UBERON:0004121!2.23e-24!102;UBERON:0000924!2.23e-24!102;UBERON:0006601!2.23e-24!102;UBERON:0000955!1.53e-23!50;UBERON:0006238!1.53e-23!50;UBERON:0000033!4.61e-23!63;UBERON:0002616!4.94e-23!49;UBERON:0002346!8.11e-23!71;UBERON:0003075!8.11e-23!71;UBERON:0007284!8.11e-23!71;UBERON:0002020!1.38e-20!34;UBERON:0003056!9.78e-20!49;UBERON:0003080!8.12e-19!40;UBERON:0002780!2.82e-18!39;UBERON:0001890!2.82e-18!39;UBERON:0006240!2.82e-18!39;UBERON:0002791!2.01e-17!29;UBERON:0003528!2.01e-17!29;UBERON:0001893!2.01e-17!29;UBERON:0000956!5.31e-13!21;UBERON:0001869!5.31e-13!21;UBERON:0000203!5.31e-13!21;UBERON:0007811!2.78e-11!86;UBERON:0000153!3.00e-11!94;UBERON:0002619!6.09e-11!17;UBERON:0000025!2.74e-10!114;UBERON:0000468!2.39e-09!333;UBERON:0004111!2.91e-09!122;UBERON:0002021!3.05e-08!10;UBERON:0000411!3.05e-08!10;UBERON:0001950!3.05e-08!10;UBERON:0003076!6.79e-07!12;UBERON:0003057!6.79e-07!12;UBERON:0000922!8.98e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.01e-27,54;UBERON:0001016,6.21e-27,75;UBERON:0001049,2.10e-26,52;UBERON:0005068,2.10e-26,52;UBERON:0006241,2.10e-26,52;UBERON:0007135,2.10e-26,52;UBERON:0001017,2.53e-26,73;UBERON:0002346,3.88e-25,64;UBERON:0003075,3.88e-25,64;UBERON:0007284,3.88e-25,64;UBERON:0004121,4.86e-25,95;UBERON:0000924,4.86e-25,95;UBERON:0006601,4.86e-25,95;UBERON:0010371,8.15e-24,73;UBERON:0000955,6.97e-23,47;UBERON:0006238,6.97e-23,47;UBERON:0002616,2.37e-22,46;UBERON:0002020,9.35e-22,34;UBERON:0003056,1.11e-20,49;UBERON:0003080,1.08e-19,40;UBERON:0002780,4.04e-19,39;UBERON:0001890,4.04e-19,39;UBERON:0006240,4.04e-19,39;UBERON:0010314,1.63e-18,92;UBERON:0003528,2.14e-18,29;UBERON:0002791,2.14e-18,29;UBERON:0001893,2.14e-18,29;UBERON:0000956,1.06e-13,21;UBERON:0001869,1.06e-13,21;UBERON:0000203,1.06e-13,21;UBERON:0002619,1.62e-11,17;UBERON:0000025,2.51e-10,114;UBERON:0004111,7.79e-09,122;UBERON:0002021,1.19e-08,10;UBERON:0000411,1.19e-08,10;UBERON:0001950,1.19e-08,10;UBERON:0003076,3.18e-07,12;UBERON:0003057,3.18e-07,12|phase1_expression=9.60893082628764,0,0,0,0,0,0,0,0.422366166455,0.70219357896598,0.171217968225505,0.159544317990673,0,0,0,0.202475267389826,0,0,0,0,10.1201515279773,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.81995180209503,9.22530074097583,7.70896359079063,6.25913075478431,11.7733584445441,5.93152693383074,6.41618666945135,5.17949760013841,11.5002051491977,0,0,0,2.05807548828758,1.14613375975503,0,47.7466847628651,42.8482693210347,41.1990412279016,2.71075625655306,0.889294796111139,1.3498495759221,1.97773272513395,0,8.38880309451533,31.5059010363675,16.4866483570479,18.2258016747782,21.2428210964896,45.7041575046086,39.0937317484356,20.0884910712525,16.4854210151367,19.3035945188104,14.3150645299205,38.4338887636415,26.8811433198426,41.1485217718205,54.709610874241,30.7338888628488,21.7762739221077,19.1339287410771,21.2389564409766,41.8372591372608,40.148813985347,49.9550514811806,4.08921443999194,9.8998743739889,0,0,0,0,0.649776417447669,0,1.82577746171277,0,0,0,1.40843419776681,0,0,0,0,0,0,2.16949371466214,0.517875767294343,0.29688427812965,4.3371331691534,2.74018930480927,2.7673859670727,2.41156224884196,2.23418543557839,0.502666365318702,0.247194967734374,1.01219549843938,0,3.07357014900077,1.10420759230197,0.484875253135222,0,11.4184510834503,12.5668024088073,0,0,0,0,21.7196427136993,23.33253074375,34.8062555352634,75.2659306432557,86.4318245776517,29.7136903720171,32.2860113504838,5.19380755636613,10.0769646194175,30.5794537704746,1.05220927943237,2.21204753036596,5.28774840196988,8.82304436046211,7.53524089178575,8.98081788797528,6.53379973452734,7.77724313845749,3.10444044886819,0.862271971731369,1.89106080167819,3.51902248327898,5.69908904311695,2.50242524303038,4.179025998266,4.11564272815887,3.78165106955137,0,0,0,1.44988040774851,1.87620847984877,1.62055855314913,2.13070262026689,2.75469924446365,2.1597395804233,1.62773761325285,1.34136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| ||
|EntrezGene=235402 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=A9DA50 | |||
|association_with_transcript=0bp_to_ENSMUST00000114256_5end | |||
|description=CAGE_peak_1_at_Lingo1_5end | |||
|id=chr9:56483431..56483498,- | |||
|ontology_enrichment_celltype=CL:0000117!1.33e-13!23;CL:0000337!1.33e-13!23;CL:0002319!8.17e-12!43;CL:0000221!1.46e-11!44;CL:0000133!1.46e-11!44;CL:0000055!7.37e-11!50;CL:0000540!5.55e-09!33;CL:0000047!5.55e-09!33;CL:0000031!5.55e-09!33;CL:0000404!5.55e-09!33;CL:0000393!8.80e-09!39;CL:0000211!8.80e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.42e-14,23;CL:0000337,2.42e-14,23;CL:0002319,2.93e-11,43;CL:0000221,5.09e-11,44;CL:0000133,5.09e-11,44;CL:0000393,2.53e-08,39;CL:0000211,2.53e-08,39;CL:0000540,2.60e-08,33;CL:0000047,2.60e-08,33;CL:0000031,2.60e-08,33;CL:0000404,2.60e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.99e-27!75;UBERON:0001016!4.99e-27!75;UBERON:0001017!1.88e-26!73;UBERON:0005743!1.88e-26!73;UBERON:0001049!3.81e-25!52;UBERON:0005068!3.81e-25!52;UBERON:0006241!3.81e-25!52;UBERON:0007135!3.81e-25!52;UBERON:0004121!2.23e-24!102;UBERON:0000924!2.23e-24!102;UBERON:0006601!2.23e-24!102;UBERON:0000955!1.53e-23!50;UBERON:0006238!1.53e-23!50;UBERON:0000033!4.61e-23!63;UBERON:0002616!4.94e-23!49;UBERON:0002346!8.11e-23!71;UBERON:0003075!8.11e-23!71;UBERON:0007284!8.11e-23!71;UBERON:0002020!1.38e-20!34;UBERON:0003056!9.78e-20!49;UBERON:0003080!8.12e-19!40;UBERON:0002780!2.82e-18!39;UBERON:0001890!2.82e-18!39;UBERON:0006240!2.82e-18!39;UBERON:0002791!2.01e-17!29;UBERON:0003528!2.01e-17!29;UBERON:0001893!2.01e-17!29;UBERON:0000956!5.31e-13!21;UBERON:0001869!5.31e-13!21;UBERON:0000203!5.31e-13!21;UBERON:0007811!2.78e-11!86;UBERON:0000153!3.00e-11!94;UBERON:0002619!6.09e-11!17;UBERON:0000025!2.74e-10!114;UBERON:0000468!2.39e-09!333;UBERON:0004111!2.91e-09!122;UBERON:0002021!3.05e-08!10;UBERON:0000411!3.05e-08!10;UBERON:0001950!3.05e-08!10;UBERON:0003076!6.79e-07!12;UBERON:0003057!6.79e-07!12;UBERON:0000922!8.98e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.01e-27,54;UBERON:0001016,6.21e-27,75;UBERON:0001049,2.10e-26,52;UBERON:0005068,2.10e-26,52;UBERON:0006241,2.10e-26,52;UBERON:0007135,2.10e-26,52;UBERON:0001017,2.53e-26,73;UBERON:0002346,3.88e-25,64;UBERON:0003075,3.88e-25,64;UBERON:0007284,3.88e-25,64;UBERON:0004121,4.86e-25,95;UBERON:0000924,4.86e-25,95;UBERON:0006601,4.86e-25,95;UBERON:0010371,8.15e-24,73;UBERON:0000955,6.97e-23,47;UBERON:0006238,6.97e-23,47;UBERON:0002616,2.37e-22,46;UBERON:0002020,9.35e-22,34;UBERON:0003056,1.11e-20,49;UBERON:0003080,1.08e-19,40;UBERON:0002780,4.04e-19,39;UBERON:0001890,4.04e-19,39;UBERON:0006240,4.04e-19,39;UBERON:0010314,1.63e-18,92;UBERON:0003528,2.14e-18,29;UBERON:0002791,2.14e-18,29;UBERON:0001893,2.14e-18,29;UBERON:0000956,1.06e-13,21;UBERON:0001869,1.06e-13,21;UBERON:0000203,1.06e-13,21;UBERON:0002619,1.62e-11,17;UBERON:0000025,2.51e-10,114;UBERON:0004111,7.79e-09,122;UBERON:0002021,1.19e-08,10;UBERON:0000411,1.19e-08,10;UBERON:0001950,1.19e-08,10;UBERON:0003076,3.18e-07,12;UBERON:0003057,3.18e-07,12 | |||
|phase1_expression=9.60893082628764,0,0,0,0,0,0,0,0.422366166455,0.70219357896598,0.171217968225505,0.159544317990673,0,0,0,0.202475267389826,0,0,0,0,10.1201515279773,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.81995180209503,9.22530074097583,7.70896359079063,6.25913075478431,11.7733584445441,5.93152693383074,6.41618666945135,5.17949760013841,11.5002051491977,0,0,0,2.05807548828758,1.14613375975503,0,47.7466847628651,42.8482693210347,41.1990412279016,2.71075625655306,0.889294796111139,1.3498495759221,1.97773272513395,0,8.38880309451533,31.5059010363675,16.4866483570479,18.2258016747782,21.2428210964896,45.7041575046086,39.0937317484356,20.0884910712525,16.4854210151367,19.3035945188104,14.3150645299205,38.4338887636415,26.8811433198426,41.1485217718205,54.709610874241,30.7338888628488,21.7762739221077,19.1339287410771,21.2389564409766,41.8372591372608,40.148813985347,49.9550514811806,4.08921443999194,9.8998743739889,0,0,0,0,0.649776417447669,0,1.82577746171277,0,0,0,1.40843419776681,0,0,0,0,0,0,2.16949371466214,0.517875767294343,0.29688427812965,4.3371331691534,2.74018930480927,2.7673859670727,2.41156224884196,2.23418543557839,0.502666365318702,0.247194967734374,1.01219549843938,0,3.07357014900077,1.10420759230197,0.484875253135222,0,11.4184510834503,12.5668024088073,0,0,0,0,21.7196427136993,23.33253074375,34.8062555352634,75.2659306432557,86.4318245776517,29.7136903720171,32.2860113504838,5.19380755636613,10.0769646194175,30.5794537704746,1.05220927943237,2.21204753036596,5.28774840196988,8.82304436046211,7.53524089178575,8.98081788797528,6.53379973452734,7.77724313845749,3.10444044886819,0.862271971731369,1.89106080167819,3.51902248327898,5.69908904311695,2.50242524303038,4.179025998266,4.11564272815887,3.78165106955137,0,0,0,1.44988040774851,1.87620847984877,1.62055855314913,2.13070262026689,2.75469924446365,2.1597395804233,1.62773761325285,1.3413670069981,0.817357396570186,3.12663714835613,1.80584210487005,2.02672023864639,2.04679982395465,1.3173006917463,1.34206418760372,54.2548067295448,54.3336353362622,0,0.793351699990633,3.83918850963421,3.94802342162745,2.06187938115349,1.21010114774006,2.00140239460383,1.33157938278791,0,0.988193728344065,1.25667604400135,1.39269530428806,1.16978452271472,0,0.432276099749388,0,5.50036912763937,2.97046132785295,7.88954149711563,1.62921062276251,2.13347735884388,2.17421041659988,0.505892296994058,0.295220295959204,0,0,0,1.16791574001266,0.786235980452812,0.224862112384854,0.202860121388503,0.482354319504834,0.763877555344259,1.72617682470486,0,0,0,0.744281895337007,0.936113019343682,0.252578877947112,0,0,0.739012760666419,3.97931964718018,4.4000543639347,3.05541154395339,3.75504397261603,3.01511263395268,3.09456733151818,1.17080188714679,2.52216230569906,2.21464689648775,3.82691444777969,1.96635977658886,1.72684981865896,0.289298117163023,0,0,0,0.551873492609465,11.8807436590966,11.4867452860359,0,0.504941854408746,0.94652465824877,0.390438744296638,1.29254038639679,0.955875191810208,1.55959071857676,2.26461224631066,0,0.584511715822624,0.790575555893047,16.0660658210904,0.851640511249612,4.27357448801413,2.76907830901079,1.15479086080775,0,6.06951590387454,3.93020624054176,2.82907619633847,2.95301892880773,3.07435147943927,2.58428293168221,2.54473610634254,1.42598951353889,0.316036757935816,0,0,0.340439605753788,4.14140516272013,2.97524972700335,4.07240366560025,4.25616560741457,6.42127743367454,8.72109809191241,9.74287837166718,3.05073220482823,0.21183207086382,0.661585194164886,2.96795255294664,2.9063596805263,4.1012788951146,4.41677672811605,4.92422699235184,0.582961673259701,16.3174265769249,1.19609616558497,6.3979929068599,4.25947412950337,0.941842285023455,0.956859594047176,1.14389086603261,0,0,0,0,3.00519193902079,4.26970880966382,2.37611749807963,1.04544148007234,1.74690050996942,0.944050424693745,0.661227645802687,0,0.388844919875379,0,0,6.27969493384711,3.97100377097034,7.19469396872976,6.07051170345336,4.39285926276023,3.16864544343536,2.99470085141085,0.838874755405687,0.241584120826006,0,0.632022241256357,2.02725215290164,2.05421914329655,0.77952493786677,0.716106782669926,0.79472541912506,0.721172697119813,0.590758108698309,0.201932899896295,0.381034033274999,0.100826185136841,0.38983152295901,0.0962118416403295,0.116876902181569,0.906921534460845,0.665957860122194,0.807424709485281,0,0.386379188064381,0.750729901804728,0.73260649706906,0.643105137237198,2.00628841614145,97.7020687727525,95.7476491934928,93.954864204061,109.642330335273,80.1546548131652,75.53938973897,89.7779925308302,81.0578165803597,73.4090702554411,84.9126911272985,1.24544817101012,3.99024873401031,5.9756762013947,6.32077464377565,5.03071590307158,7.16989682955055,7.55638874525492,6.38708677440572,8.02298023979538,6.82282471762253,5.83002389747551,6.97917463128482,7.77224512000024,8.25924466022814,8.44301393647515,8.57328644309533,8.92309309775387,9.64546102318525,7.82963211526283,6.47675248591348,5.14303878578123,6.92155644021416,6.67621331852499,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| |||
|short_description=p1@Lingo1 | |||
}} |
Revision as of 18:17, 14 September 2013
Short description: | p1@Lingo1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lingo1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000114256_5end |
EntrezGene: | Lingo1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.42e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.42e-14 | 23 |
neural cell | 2.93e-11 | 43 |
ectodermal cell | 5.09e-11 | 44 |
neurectodermal cell | 5.09e-11 | 44 |
electrically responsive cell | 2.53e-08 | 39 |
electrically active cell | 2.53e-08 | 39 |
neuron | 2.60e-08 | 33 |
neuronal stem cell | 2.60e-08 | 33 |
neuroblast | 2.60e-08 | 33 |
electrically signaling cell | 2.60e-08 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.