FFCP PHASE1:Mm9::chrX:45872589..45872651,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19337|HGNC=|MCL_coexpression_id=13|UniProt=P97950,Q3SXA7|association_with_transcript=0bp_to_NM_011228,uc009tci.1_5end|description=CAGE_peak_1_at_Rab33a_5end|id=chrX:45872589..45872651,+|ontology_enrichment_celltype=CL:0000117!1.13e-13!23;CL:0000337!1.13e-13!23;CL:0000540!1.19e-10!33;CL:0000047!1.19e-10!33;CL:0000031!1.19e-10!33;CL:0000404!1.19e-10!33;CL:0000393!7.18e-07!39;CL:0000211!7.18e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.39e-16,23;CL:0000337,6.39e-16,23;CL:0000540,1.32e-10,33;CL:0000047,1.32e-10,33;CL:0000031,1.32e-10,33;CL:0000404,1.32e-10,33;CL:0000393,2.57e-07,39;CL:0000211,2.57e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.25e-23!71;UBERON:0003075!3.25e-23!71;UBERON:0007284!3.25e-23!71;UBERON:0001017!1.10e-19!73;UBERON:0005743!1.10e-19!73;UBERON:0001049!6.09e-19!52;UBERON:0005068!6.09e-19!52;UBERON:0006241!6.09e-19!52;UBERON:0007135!6.09e-19!52;UBERON:0000073!1.09e-18!75;UBERON:0001016!1.09e-18!75;UBERON:0002020!2.42e-18!34;UBERON:0004121!9.70e-18!102;UBERON:0000924!9.70e-18!102;UBERON:0006601!9.70e-18!102;UBERON:0000955!1.20e-17!50;UBERON:0006238!1.20e-17!50;UBERON:0000033!1.64e-17!63;UBERON:0002616!4.94e-17!49;UBERON:0003056!4.95e-16!49;UBERON:0002791!2.19e-15!29;UBERON:0003528!2.19e-15!29;UBERON:0001893!2.19e-15!29;UBERON:0003080!2.22e-15!40;UBERON:0007811!8.11e-15!86;UBERON:0002780!8.57e-15!39;UBERON:0001890!8.57e-15!39;UBERON:0006240!8.57e-15!39;UBERON:0000153!1.79e-13!94;UBERON:0000956!4.39e-11!21;UBERON:0001869!4.39e-11!21;UBERON:0000203!4.39e-11!21;UBERON:0002619!6.83e-09!17;UBERON:0002021!2.75e-08!10;UBERON:0000411!2.75e-08!10;UBERON:0001950!2.75e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.26e-23,54;UBERON:0001049,5.94e-22,52;UBERON:0005068,5.94e-22,52;UBERON:0006241,5.94e-22,52;UBERON:0007135,5.94e-22,52;UBERON:0010314,7.38e-22,92;UBERON:0002020,2.12e-21,34;UBERON:0002346,2.20e-21,64;UBERON:0003075,2.20e-21,64;UBERON:0007284,2.20e-21,64;UBERON:0001017,6.51e-20,73;UBERON:0001016,1.03e-18,75;UBERON:0000955,1.36e-18,47;UBERON:0006238,1.36e-18,47;UBERON:0003528,6.78e-18,29;UBERON:0002791,6.78e-18,29;UBERON:0001893,6.78e-18,29;UBERON:0002616,6.96e-18,46;UBERON:0010371,2.15e-17,73;UBERON:0003080,4.34e-17,40;UBERON:0003056,4.56e-17,49;UBERON:0002780,2.11e-16,39;UBERON:0001890,2.11e-16,39;UBERON:0006240,2.11e-16,39;UBERON:0004121,8.35e-15,95;UBERON:0000924,8.35e-15,95;UBERON:0006601,8.35e-15,95;UBERON:0000956,8.56e-13,21;UBERON:0001869,8.56e-13,21;UBERON:0000203,8.56e-13,21;UBERON:0002619,3.37e-10,17;UBERON:0002021,1.55e-09,10;UBERON:0000411,1.55e-09,10;UBERON:0001950,1.55e-09,10|phase1_expression=3.20297694209588,0,0,0,0,0.33575854382378,0,0.129123323441576,0.140788722151667,0,0.513653904676515,0.319088635981346,0.171200729931206,0,0.333109761815663,0,0,0,0,0,3.99703463710028,0,0,0.159992422793407,0.45881856213434,0,0.430761996159075,0.215471232685889,0,0.252030129759931,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0.7813353445238,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0.979904951377538,0,0,0,0,0,0.573066879877513,0,19.4223802425214,24.3335850465135,27.2547503507657,0.677689064138264,0,0,1.97773272513395,0,0.599200221036809,0.768436610643109,16.6940275816649,22.1409738863973,20.6118462124354,21.4238238302853,25.8416192913388,25.8455586343553,20.1275489138296,21.1420320920305,13.2139057199266,17.4931653176707,20.4296689230804,24.7946220932764,25.7995154958795,18.7528813400434,16.4717969410815,14.069065250792,12.3766580699216,15.0260578591571,21.4981238006645,23.2999307281626,0,0.604572480854284,0.579728977403356,0,0.679971333707751,0,0,0,1.12355536105401,0,0,0,1.69012103732017,0,0,0,0,0,0.505524445014783,0.11418387971906,0,7.71899123137089,5.55153045651635,18.5723941770406,14.2981608298756,18.8403300690778,12.6995803706561,10.8073268543521,0,0.289198713839823,0,0.161766849947409,0,0,0,18.1524094147159,18.2218634927706,0,0.11981512450592,0.599902730993408,0,21.5698520742945,19.2150253183823,29.2774640422974,25.3783507480724,36.0558794835766,19.1165000994795,21.5780879880118,1.32391173005411,0.124406970610093,0,0.420883711772948,0.780722657776222,1.37941262660084,2.70093194708024,2.56198190320716,2.51735046859913,3.58718416797579,3.65436725782942,3.10444044886819,1.07783996466421,1.13463648100692,0.879755620819744,1.97276159184817,0.556094498451196,0,0.411564272815887,1.39323986772945,0,0.257347907114715,0,2.07125772535502,2.34526059981096,1.08037236876609,2.13070262026689,1.77087808572663,1.69693824176116,1.39520366850245,1.07309360559848,1.40118410840603,0.822799249567402,0,0.162137619091711,0.877199924551994,1.09775057645525,1.20785776884335,17.2437757822584,16.9792610425819,0,0,1.2797295032114,1.62565670302307,1.28867461322093,0.80673409849337,1.33426826306922,0.760902504450237,0,0.658795818896044,1.25667604400135,0.198956472041151,0.19496408711912,0,0.216138049874694,0.199141273254367,0.569003702859245,1.25673363870702,0,0.203651327845314,0.193952487167626,0.280543279561274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| ||
|EntrezGene=19337 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=P97950,Q3SXA7 | |||
|association_with_transcript=0bp_to_NM_011228,uc009tci.1_5end | |||
|description=CAGE_peak_1_at_Rab33a_5end | |||
|id=chrX:45872589..45872651,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.13e-13!23;CL:0000337!1.13e-13!23;CL:0000540!1.19e-10!33;CL:0000047!1.19e-10!33;CL:0000031!1.19e-10!33;CL:0000404!1.19e-10!33;CL:0000393!7.18e-07!39;CL:0000211!7.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.39e-16,23;CL:0000337,6.39e-16,23;CL:0000540,1.32e-10,33;CL:0000047,1.32e-10,33;CL:0000031,1.32e-10,33;CL:0000404,1.32e-10,33;CL:0000393,2.57e-07,39;CL:0000211,2.57e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.25e-23!71;UBERON:0003075!3.25e-23!71;UBERON:0007284!3.25e-23!71;UBERON:0001017!1.10e-19!73;UBERON:0005743!1.10e-19!73;UBERON:0001049!6.09e-19!52;UBERON:0005068!6.09e-19!52;UBERON:0006241!6.09e-19!52;UBERON:0007135!6.09e-19!52;UBERON:0000073!1.09e-18!75;UBERON:0001016!1.09e-18!75;UBERON:0002020!2.42e-18!34;UBERON:0004121!9.70e-18!102;UBERON:0000924!9.70e-18!102;UBERON:0006601!9.70e-18!102;UBERON:0000955!1.20e-17!50;UBERON:0006238!1.20e-17!50;UBERON:0000033!1.64e-17!63;UBERON:0002616!4.94e-17!49;UBERON:0003056!4.95e-16!49;UBERON:0002791!2.19e-15!29;UBERON:0003528!2.19e-15!29;UBERON:0001893!2.19e-15!29;UBERON:0003080!2.22e-15!40;UBERON:0007811!8.11e-15!86;UBERON:0002780!8.57e-15!39;UBERON:0001890!8.57e-15!39;UBERON:0006240!8.57e-15!39;UBERON:0000153!1.79e-13!94;UBERON:0000956!4.39e-11!21;UBERON:0001869!4.39e-11!21;UBERON:0000203!4.39e-11!21;UBERON:0002619!6.83e-09!17;UBERON:0002021!2.75e-08!10;UBERON:0000411!2.75e-08!10;UBERON:0001950!2.75e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.26e-23,54;UBERON:0001049,5.94e-22,52;UBERON:0005068,5.94e-22,52;UBERON:0006241,5.94e-22,52;UBERON:0007135,5.94e-22,52;UBERON:0010314,7.38e-22,92;UBERON:0002020,2.12e-21,34;UBERON:0002346,2.20e-21,64;UBERON:0003075,2.20e-21,64;UBERON:0007284,2.20e-21,64;UBERON:0001017,6.51e-20,73;UBERON:0001016,1.03e-18,75;UBERON:0000955,1.36e-18,47;UBERON:0006238,1.36e-18,47;UBERON:0003528,6.78e-18,29;UBERON:0002791,6.78e-18,29;UBERON:0001893,6.78e-18,29;UBERON:0002616,6.96e-18,46;UBERON:0010371,2.15e-17,73;UBERON:0003080,4.34e-17,40;UBERON:0003056,4.56e-17,49;UBERON:0002780,2.11e-16,39;UBERON:0001890,2.11e-16,39;UBERON:0006240,2.11e-16,39;UBERON:0004121,8.35e-15,95;UBERON:0000924,8.35e-15,95;UBERON:0006601,8.35e-15,95;UBERON:0000956,8.56e-13,21;UBERON:0001869,8.56e-13,21;UBERON:0000203,8.56e-13,21;UBERON:0002619,3.37e-10,17;UBERON:0002021,1.55e-09,10;UBERON:0000411,1.55e-09,10;UBERON:0001950,1.55e-09,10 | |||
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|short_description=p1@Rab33a | |||
}} |
Revision as of 19:50, 14 September 2013
Short description: | p1@Rab33a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab33a_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_NM_011228, uc009tci.1_5end |
EntrezGene: | Rab33a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.39e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.39e-16 | 23 |
neuron | 1.32e-10 | 33 |
neuronal stem cell | 1.32e-10 | 33 |
neuroblast | 1.32e-10 | 33 |
electrically signaling cell | 1.32e-10 | 33 |
electrically responsive cell | 2.57e-07 | 39 |
electrically active cell | 2.57e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.26e-23 | 54 |
neural tube | 5.94e-22 | 52 |
neural rod | 5.94e-22 | 52 |
future spinal cord | 5.94e-22 | 52 |
neural keel | 5.94e-22 | 52 |
structure with developmental contribution from neural crest | 7.38e-22 | 92 |
gray matter | 2.12e-21 | 34 |
neurectoderm | 2.20e-21 | 64 |
neural plate | 2.20e-21 | 64 |
presumptive neural plate | 2.20e-21 | 64 |
central nervous system | 6.51e-20 | 73 |
nervous system | 1.03e-18 | 75 |
brain | 1.36e-18 | 47 |
future brain | 1.36e-18 | 47 |
brain grey matter | 6.78e-18 | 29 |
regional part of telencephalon | 6.78e-18 | 29 |
telencephalon | 6.78e-18 | 29 |
regional part of brain | 6.96e-18 | 46 |
ecto-epithelium | 2.15e-17 | 73 |
anterior neural tube | 4.34e-17 | 40 |
pre-chordal neural plate | 4.56e-17 | 49 |
regional part of forebrain | 2.11e-16 | 39 |
forebrain | 2.11e-16 | 39 |
future forebrain | 2.11e-16 | 39 |
ectoderm-derived structure | 8.35e-15 | 95 |
ectoderm | 8.35e-15 | 95 |
presumptive ectoderm | 8.35e-15 | 95 |
cerebral cortex | 8.56e-13 | 21 |
cerebral hemisphere | 8.56e-13 | 21 |
pallium | 8.56e-13 | 21 |
regional part of cerebral cortex | 3.37e-10 | 17 |
occipital lobe | 1.55e-09 | 10 |
visual cortex | 1.55e-09 | 10 |
neocortex | 1.55e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.