FFCP PHASE1:Mm9::chrX:56387905..56387962,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14168|HGNC=|MCL_coexpression_id=2|UniProt=Q8VCY9|association_with_transcript=-292bp_to_ENSMUST00000033473,NM_010200,uc009tht.1_5end|description=CAGE_peak_1_at_Fgf13_5end|id=chrX:56387905..56387962,-|ontology_enrichment_celltype=CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000540!1.92e-09!33;CL:0000047!1.92e-09!33;CL:0000031!1.92e-09!33;CL:0000404!1.92e-09!33;CL:0002319!1.24e-07!43;CL:0000221!1.38e-07!44;CL:0000133!1.38e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-13,23;CL:0000337,2.21e-13,23;CL:0000540,6.03e-10,33;CL:0000047,6.03e-10,33;CL:0000031,6.03e-10,33;CL:0000404,6.03e-10,33;CL:0002319,4.87e-08,43;CL:0000221,5.45e-08,44;CL:0000133,5.45e-08,44;CL:0000393,8.97e-07,39;CL:0000211,8.97e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.47e-21!73;UBERON:0005743!5.47e-21!73;UBERON:0001049!7.81e-21!52;UBERON:0005068!7.81e-21!52;UBERON:0006241!7.81e-21!52;UBERON:0007135!7.81e-21!52;UBERON:0002020!5.74e-20!34;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0000955!1.56e-19!50;UBERON:0006238!1.56e-19!50;UBERON:0002616!4.92e-19!49;UBERON:0003080!1.60e-18!40;UBERON:0003056!3.18e-18!49;UBERON:0000033!4.79e-18!63;UBERON:0002780!6.12e-18!39;UBERON:0001890!6.12e-18!39;UBERON:0006240!6.12e-18!39;UBERON:0002346!4.56e-17!71;UBERON:0003075!4.56e-17!71;UBERON:0007284!4.56e-17!71;UBERON:0002791!6.52e-17!29;UBERON:0003528!6.52e-17!29;UBERON:0001893!6.52e-17!29;UBERON:0004121!2.75e-16!102;UBERON:0000924!2.75e-16!102;UBERON:0006601!2.75e-16!102;UBERON:0000153!1.20e-15!94;UBERON:0007811!4.01e-14!86;UBERON:0000956!5.56e-13!21;UBERON:0001869!5.56e-13!21;UBERON:0000203!5.56e-13!21;UBERON:0002619!5.35e-11!17;UBERON:0002021!4.56e-08!10;UBERON:0000411!4.56e-08!10;UBERON:0001950!4.56e-08!10;UBERON:0000468!7.14e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.98e-24,54;UBERON:0001049,1.36e-22,52;UBERON:0005068,1.36e-22,52;UBERON:0006241,1.36e-22,52;UBERON:0007135,1.36e-22,52;UBERON:0001017,1.85e-22,73;UBERON:0002346,8.51e-22,64;UBERON:0003075,8.51e-22,64;UBERON:0007284,8.51e-22,64;UBERON:0002020,1.59e-21,34;UBERON:0001016,5.77e-21,75;UBERON:0010371,1.69e-20,73;UBERON:0003080,5.86e-20,40;UBERON:0002780,2.52e-19,39;UBERON:0001890,2.52e-19,39;UBERON:0006240,2.52e-19,39;UBERON:0003056,3.21e-19,49;UBERON:0000955,3.48e-19,47;UBERON:0006238,3.48e-19,47;UBERON:0004121,6.67e-19,95;UBERON:0000924,6.67e-19,95;UBERON:0006601,6.67e-19,95;UBERON:0002616,1.17e-18,46;UBERON:0003528,3.28e-18,29;UBERON:0002791,3.28e-18,29;UBERON:0001893,3.28e-18,29;UBERON:0010314,1.73e-15,92;UBERON:0000956,6.02e-14,21;UBERON:0001869,6.02e-14,21;UBERON:0000203,6.02e-14,21;UBERON:0002619,8.52e-12,17;UBERON:0002021,1.28e-08,10;UBERON:0000411,1.28e-08,10;UBERON:0001950,1.28e-08,10|phase1_expression=1.28119077683835,0,0,0,0,0,0,6.58528949552039,1.12630977721333,2.57470978954193,0.171217968225505,0,6.50562773738582,7.51815460803378,0.333109761815663,0.607425802169478,0,1.41957974411207,1.37114433605739,0.42438965179803,6.4632900514813,0,0,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.15705656797875,3.95435128922049,3.30530828426282,1.81982348112971,2.87505128729943,0.671130424230945,4.35217285206807,11.4271891708438,0.257259436035947,1.14613375975503,0.515672092277442,6.47412674750713,9.52183762689659,6.33831403506179,0.338844532069132,0,0.449949858640699,0.988866362566974,0.7104801149461,0.299600110518405,1.15265491596466,9.12468588314603,10.2604513132085,11.1472229516232,25.1372866275347,29.3755159465646,16.7812394924487,15.814502718009,14.7075005857603,20.9220173898839,29.8788371119339,24.2698322544865,7.78129097608144,7.31901148819277,5.2091337055676,11.4465029590566,16.3201156909187,25.8229038742809,35.3554302568401,26.1963892670349,12.4887628702951,0.302904773332736,0.151143120213571,0,0,0,0,0,0,1.82577746171277,0,0,0,1.83096445709685,0,0,0,10.3915699685383,15.454951793981,11.62706223534,1.82694207550496,3.88406825470758,0.445326417194474,0.867426633830679,0.913396434936424,0.230615497256059,0.60289056221049,0.470354828542819,0.251333182659351,0.247194967734374,2.60278842455841,0,1.45590164952668,1.10420759230197,0.969750506270444,0,0.292780797011547,0.209446706813455,0.255457055208591,0,0,0,16.4769703345305,65.4225862030636,30.7853162676518,82.5665520913313,97.1718737855256,17.0386196538839,37.6399730317198,1.93494791315601,1.36847667671102,0.505445516867349,0.841767423545896,5.07469727554544,3.67843367093557,2.88099407688559,2.10986744970001,3.40182495756639,2.3060469651273,2.06143794031403,2.32833033665114,4.095791865724,4.72765200419548,4.39877810409872,2.41115305670332,2.50242524303038,3.1342694986995,3.2925141825271,0.796137067273973,0,0,0,4.97101854085205,6.3322036194896,5.40186184383045,7.10234206755631,6.09969118416952,7.55908853148153,5.8133486187602,6.9751084363901,3.61972561338225,2.30383789878873,0.656669856316381,1.05389452409612,0.146199987425332,0.219550115291051,0.134206418760372,147.413253943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| ||
|EntrezGene=14168 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q8VCY9 | |||
|association_with_transcript=-292bp_to_ENSMUST00000033473,NM_010200,uc009tht.1_5end | |||
|description=CAGE_peak_1_at_Fgf13_5end | |||
|id=chrX:56387905..56387962,- | |||
|ontology_enrichment_celltype=CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000540!1.92e-09!33;CL:0000047!1.92e-09!33;CL:0000031!1.92e-09!33;CL:0000404!1.92e-09!33;CL:0002319!1.24e-07!43;CL:0000221!1.38e-07!44;CL:0000133!1.38e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-13,23;CL:0000337,2.21e-13,23;CL:0000540,6.03e-10,33;CL:0000047,6.03e-10,33;CL:0000031,6.03e-10,33;CL:0000404,6.03e-10,33;CL:0002319,4.87e-08,43;CL:0000221,5.45e-08,44;CL:0000133,5.45e-08,44;CL:0000393,8.97e-07,39;CL:0000211,8.97e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.47e-21!73;UBERON:0005743!5.47e-21!73;UBERON:0001049!7.81e-21!52;UBERON:0005068!7.81e-21!52;UBERON:0006241!7.81e-21!52;UBERON:0007135!7.81e-21!52;UBERON:0002020!5.74e-20!34;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0000955!1.56e-19!50;UBERON:0006238!1.56e-19!50;UBERON:0002616!4.92e-19!49;UBERON:0003080!1.60e-18!40;UBERON:0003056!3.18e-18!49;UBERON:0000033!4.79e-18!63;UBERON:0002780!6.12e-18!39;UBERON:0001890!6.12e-18!39;UBERON:0006240!6.12e-18!39;UBERON:0002346!4.56e-17!71;UBERON:0003075!4.56e-17!71;UBERON:0007284!4.56e-17!71;UBERON:0002791!6.52e-17!29;UBERON:0003528!6.52e-17!29;UBERON:0001893!6.52e-17!29;UBERON:0004121!2.75e-16!102;UBERON:0000924!2.75e-16!102;UBERON:0006601!2.75e-16!102;UBERON:0000153!1.20e-15!94;UBERON:0007811!4.01e-14!86;UBERON:0000956!5.56e-13!21;UBERON:0001869!5.56e-13!21;UBERON:0000203!5.56e-13!21;UBERON:0002619!5.35e-11!17;UBERON:0002021!4.56e-08!10;UBERON:0000411!4.56e-08!10;UBERON:0001950!4.56e-08!10;UBERON:0000468!7.14e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.98e-24,54;UBERON:0001049,1.36e-22,52;UBERON:0005068,1.36e-22,52;UBERON:0006241,1.36e-22,52;UBERON:0007135,1.36e-22,52;UBERON:0001017,1.85e-22,73;UBERON:0002346,8.51e-22,64;UBERON:0003075,8.51e-22,64;UBERON:0007284,8.51e-22,64;UBERON:0002020,1.59e-21,34;UBERON:0001016,5.77e-21,75;UBERON:0010371,1.69e-20,73;UBERON:0003080,5.86e-20,40;UBERON:0002780,2.52e-19,39;UBERON:0001890,2.52e-19,39;UBERON:0006240,2.52e-19,39;UBERON:0003056,3.21e-19,49;UBERON:0000955,3.48e-19,47;UBERON:0006238,3.48e-19,47;UBERON:0004121,6.67e-19,95;UBERON:0000924,6.67e-19,95;UBERON:0006601,6.67e-19,95;UBERON:0002616,1.17e-18,46;UBERON:0003528,3.28e-18,29;UBERON:0002791,3.28e-18,29;UBERON:0001893,3.28e-18,29;UBERON:0010314,1.73e-15,92;UBERON:0000956,6.02e-14,21;UBERON:0001869,6.02e-14,21;UBERON:0000203,6.02e-14,21;UBERON:0002619,8.52e-12,17;UBERON:0002021,1.28e-08,10;UBERON:0000411,1.28e-08,10;UBERON:0001950,1.28e-08,10 | |||
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| |||
|short_description=p1@Fgf13 | |||
}} |
Revision as of 19:57, 14 September 2013
Short description: | p1@Fgf13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fgf13_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -292bp_to_ENSMUST00000033473, NM_010200, uc009tht.1_5end |
EntrezGene: | Fgf13 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.21e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-13 | 23 |
neuron | 6.03e-10 | 33 |
neuronal stem cell | 6.03e-10 | 33 |
neuroblast | 6.03e-10 | 33 |
electrically signaling cell | 6.03e-10 | 33 |
neural cell | 4.87e-08 | 43 |
ectodermal cell | 5.45e-08 | 44 |
neurectodermal cell | 5.45e-08 | 44 |
electrically responsive cell | 8.97e-07 | 39 |
electrically active cell | 8.97e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.98e-24 | 54 |
neural tube | 1.36e-22 | 52 |
neural rod | 1.36e-22 | 52 |
future spinal cord | 1.36e-22 | 52 |
neural keel | 1.36e-22 | 52 |
central nervous system | 1.85e-22 | 73 |
neurectoderm | 8.51e-22 | 64 |
neural plate | 8.51e-22 | 64 |
presumptive neural plate | 8.51e-22 | 64 |
gray matter | 1.59e-21 | 34 |
nervous system | 5.77e-21 | 75 |
ecto-epithelium | 1.69e-20 | 73 |
anterior neural tube | 5.86e-20 | 40 |
regional part of forebrain | 2.52e-19 | 39 |
forebrain | 2.52e-19 | 39 |
future forebrain | 2.52e-19 | 39 |
pre-chordal neural plate | 3.21e-19 | 49 |
brain | 3.48e-19 | 47 |
future brain | 3.48e-19 | 47 |
ectoderm-derived structure | 6.67e-19 | 95 |
ectoderm | 6.67e-19 | 95 |
presumptive ectoderm | 6.67e-19 | 95 |
regional part of brain | 1.17e-18 | 46 |
brain grey matter | 3.28e-18 | 29 |
regional part of telencephalon | 3.28e-18 | 29 |
telencephalon | 3.28e-18 | 29 |
structure with developmental contribution from neural crest | 1.73e-15 | 92 |
cerebral cortex | 6.02e-14 | 21 |
cerebral hemisphere | 6.02e-14 | 21 |
pallium | 6.02e-14 | 21 |
regional part of cerebral cortex | 8.52e-12 | 17 |
occipital lobe | 1.28e-08 | 10 |
visual cortex | 1.28e-08 | 10 |
neocortex | 1.28e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.