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MCL coexpression mm9:384: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.105984274670047,0.281903928295643,0.286963248752788,0,0,0.0533216027742204,0.0383791314133276,0,0,0,0.0636076933539527,0.0805258058980907,0.0318791326238796,0,0.113232148794519,0.168146612664118,0.0644551523736777,0.0163909486338286,0,0,0,0,0,0.00315471893171693,0,0,0,0,0,0,0.569908033928263,0.432161063743152,0.311127917657318,0.633787472570992,0.644953078647111,0.442653131199111,0,0,0,0,0,0,0,0,0,0.155099636484264,0,0.0303589841697307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109371535557016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0221317494654318,0,0,0,0,0.00646107854396121,0,0,0,0,0,0.0193326983622358,0,0,0,0,0,0.562658492005349,0.668100953200221,0.533005067535953,0,0,0,0,0,0,0,0.0168208802955764,0.0254617646470484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0106233178102947,0,0,0.438028622923274,0.42645631941075,0.408063133999687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0160530723939347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0339046902354485,0,0,0,0,0,0.134358520439692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751133222838768,0.71142198929972,0.664665527057571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0132237801430346,0,0,0,0,0,0,0.000236550335321898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00220791732834624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000329301314453107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000346785609390089
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!9.02e-20!32;CL:0002032!9.02e-20!32;CL:0000037!9.02e-20!32;CL:0000566!9.02e-20!32;CL:0000837!9.02e-20!32;CL:0002320!8.00e-14!46;CL:0000134!8.00e-14!46;CL:0000838!1.45e-12!12;CL:0000542!1.85e-11!13;CL:0000051!1.85e-11!13;CL:0002031!3.90e-11!25;CL:0000219!4.95e-11!54;CL:0000084!6.75e-11!11;CL:0000827!6.75e-11!11;CL:0000738!2.14e-10!17;CL:0002087!2.14e-10!17;CL:0000049!1.08e-09!19;CL:0000034!5.15e-09!97;CL:0002242!5.60e-09!16;CL:0000791!1.08e-07!9;CL:0000789!1.08e-07!9;CL:0002420!1.08e-07!9;CL:0002419!1.08e-07!9;CL:0000790!1.08e-07!9;CL:0000723!5.51e-07!91;CL:0000048!5.51e-07!91
|ontology_enrichment_disease=DOID:0060100!1.62e-07!3;DOID:4045!1.62e-07!3
|ontology_enrichment_uberon=UBERON:0002384!8.00e-14!46
}}

Latest revision as of 15:12, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:60748854..60748872,-p@chr11:60748854..60748872
-
Mm9::chr11:6447278..6447298,+p@chr11:6447278..6447298
+
Mm9::chr11:93858080..93858104,-p@chr11:93858080..93858104
-
Mm9::chr12:103540615..103540625,-p@chr12:103540615..103540625
-
Mm9::chr15:25840107..25840138,+p@chr15:25840107..25840138
+
Mm9::chr15:76029953..76029966,+p@chr15:76029953..76029966
+
Mm9::chr15:96485963..96485965,-p@chr15:96485963..96485965
-
Mm9::chr16:91485163..91485181,-p@chr16:91485163..91485181
-
Mm9::chr18:60661285..60661300,-p2@2010002N04Rik
Mm9::chr18:60661321..60661331,-p7@2010002N04Rik
Mm9::chr18:60661347..60661399,-p4@2010002N04Rik
Mm9::chr19:6297902..6297924,+p4@Ehd1
Mm9::chr1:145851272..145851285,-p1@Rgs2
Mm9::chr3:89884407..89884420,+p5@Tpm3
Mm9::chr5:109987964..109987975,-p2@Crlf2
Mm9::chr5:114395271..114395286,-p@chr5:114395271..114395286
-
Mm9::chr5:31262543..31262555,-p3@Preb
Mm9::chr5:3494611..3494651,+p@chr5:3494611..3494651
+
Mm9::chr5:98460316..98460335,-p10@Antxr2
Mm9::chr7:29164115..29164120,-p@chr7:29164115..29164120
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell9.02e-2032
hematopoietic oligopotent progenitor cell9.02e-2032
hematopoietic stem cell9.02e-2032
angioblastic mesenchymal cell9.02e-2032
hematopoietic multipotent progenitor cell9.02e-2032
connective tissue cell8.00e-1446
mesenchymal cell8.00e-1446
lymphoid lineage restricted progenitor cell1.45e-1212
lymphocyte1.85e-1113
common lymphoid progenitor1.85e-1113
hematopoietic lineage restricted progenitor cell3.90e-1125
motile cell4.95e-1154
T cell6.75e-1111
pro-T cell6.75e-1111
leukocyte2.14e-1017
nongranular leukocyte2.14e-1017
common myeloid progenitor1.08e-0919
stem cell5.15e-0997
nucleate cell5.60e-0916
mature alpha-beta T cell1.08e-079
alpha-beta T cell1.08e-079
immature T cell1.08e-079
mature T cell1.08e-079
immature alpha-beta T cell1.08e-079
somatic stem cell5.51e-0791
multi fate stem cell5.51e-0791

Uber Anatomy
Ontology termp-valuen
connective tissue8.00e-1446

Disease
Ontology termp-valuen
musculoskeletal system cancer1.62e-073
muscle cancer1.62e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.4555
MA0004.10.166273
MA0006.10.522852
MA0007.10.156418
MA0009.10.517357
MA0014.10.404422
MA0017.10.0822314
MA0019.10.359884
MA0024.12.08972
MA0025.10.731571
MA0027.12.12059
MA0028.12.52479
MA0029.10.459477
MA0030.10.465221
MA0031.11.10816
MA0038.10.270746
MA0040.10.528552
MA0041.10.118772
MA0042.10.11115
MA0043.10.604858
MA0046.10.549602
MA0048.10.454093
MA0050.10.19271
MA0051.10.277682
MA0052.10.535783
MA0055.10.163189
MA0056.10
MA0057.10.0382333
MA0058.10.107291
MA0059.10.366652
MA0060.10.145212
MA0061.13.23992
MA0063.10
MA0066.10.262291
MA0067.10.836675
MA0068.10.242157
MA0069.10.536088
MA0070.10.52739
MA0071.10.561031
MA0072.10.519805
MA0073.11.52738
MA0074.10.235223
MA0076.12.15081
MA0077.10.500504
MA0078.10.303693
MA0081.11.88815
MA0083.10.604132
MA0084.11.15371
MA0087.10.564877
MA0088.10.63442
MA0089.10
MA0090.10.870232
MA0091.10.519739
MA0092.10.14428
MA0093.10.0783063
MA0095.10
MA0098.10
MA0100.10.643107
MA0101.11.81682
MA0103.10.0877522
MA0105.13.73463
MA0106.10.309901
MA0107.11.49925
MA0108.20.378962
MA0109.10
MA0111.10.153116
MA0113.10.287528
MA0114.10.0467203
MA0115.10.60742
MA0116.10.243718
MA0117.11.41481
MA0119.10.119877
MA0122.10.596061
MA0124.10.786128
MA0125.10.716372
MA0130.10
MA0131.10.937216
MA0132.10
MA0133.10
MA0135.10.638323
MA0136.10.250125
MA0139.10.112213
MA0140.10.226598
MA0141.10.323987
MA0142.10.421761
MA0143.10.300449
MA0144.10.180765
MA0145.10.692133
MA0146.11.40578
MA0147.10.759328
MA0148.10.17717
MA0149.10.12279
MA0062.22.69801
MA0035.20.651023
MA0039.21.26799
MA0138.21.64983
MA0002.20.821867
MA0137.20.0966473
MA0104.20.888584
MA0047.20.270154
MA0112.20.287479
MA0065.20.156268
MA0150.12.11639
MA0151.10
MA0152.10.744061
MA0153.10.653688
MA0154.10.68796
MA0155.11.80069
MA0156.10.634341
MA0157.11.02143
MA0158.10
MA0159.10.0571096
MA0160.10.529811
MA0161.10
MA0162.10.828594
MA0163.10.562267
MA0164.10.250399
MA0080.21.50365
MA0018.20.257759
MA0099.21.63161
MA0079.20.695046
MA0102.21.20505
MA0258.10.658099
MA0259.10.182669
MA0442.10
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