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MCL coexpression mm9:791: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
}}

Latest revision as of 15:53, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69413736..69413739,-p@chr11:69413736..69413739
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Mm9::chr11:69414174..69414182,-p@chr11:69414174..69414182
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Mm9::chr11:69414336..69414343,-p@chr11:69414336..69414343
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Mm9::chr11:69414671..69414691,-p@chr11:69414671..69414691
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Mm9::chr11:69414732..69414752,-p@chr11:69414732..69414752
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Mm9::chr6:48490487..48490499,+p@chr6:48490487..48490499
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Mm9::chr7:149558247..149558276,-p3@6330512M04Rik
Mm9::chr8:113253955..113253976,+p@chr8:113253955..113253976
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Mm9::chr8:113256021..113256034,+p@chr8:113256021..113256034
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
central nervous system2.28e-3073
nervous system6.46e-2975
ectoderm-derived structure2.38e-2795
ectoderm2.38e-2795
presumptive ectoderm2.38e-2795
regional part of nervous system6.50e-2754
neural tube3.87e-2552
neural rod3.87e-2552
future spinal cord3.87e-2552
neural keel3.87e-2552
neurectoderm9.75e-2364
neural plate9.75e-2364
presumptive neural plate9.75e-2364
ecto-epithelium5.00e-2173
brain5.07e-2147
future brain5.07e-2147
regional part of brain3.28e-2046
gray matter2.42e-1734
structure with developmental contribution from neural crest1.64e-1692
anterior neural tube3.21e-1540
pre-chordal neural plate3.44e-1549
regional part of forebrain2.01e-1439
forebrain2.01e-1439
future forebrain2.01e-1439
brain grey matter1.51e-1329
regional part of telencephalon1.51e-1329
telencephalon1.51e-1329
posterior neural tube2.71e-1112
chordal neural plate2.71e-1112
cerebral cortex6.60e-1021
cerebral hemisphere6.60e-1021
pallium6.60e-1021
regional part of cerebral cortex2.99e-0917
occipital lobe2.48e-0810
visual cortex2.48e-0810
neocortex2.48e-0810
tube1.38e-07114
anatomical conduit3.35e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0343274
MA0004.10.394951
MA0006.10.238555
MA0007.10.38073
MA0009.10.82278
MA0014.10.248772
MA0017.10.26239
MA0019.10.642876
MA0024.10.779446
MA0025.11.05446
MA0027.12.46647
MA0028.10.692501
MA0029.10.757957
MA0030.10.764448
MA0031.10.729293
MA0038.10.534262
MA0040.10.835181
MA0041.10.323687
MA0042.10.311486
MA0043.10.918718
MA0046.10.858391
MA0048.10.0824771
MA0050.11.93344
MA0051.10.542972
MA0052.10.84317
MA0055.10.0882028
MA0056.10
MA0057.10.0745664
MA0058.10.305206
MA0059.11.53319
MA0060.10.169058
MA0061.10.56663
MA0063.10
MA0066.10.523573
MA0067.11.16502
MA0068.10.563625
MA0069.10.843506
MA0070.10.833895
MA0071.10.431174
MA0072.10.825495
MA0073.14.71947
MA0074.11.22546
MA0076.10.765781
MA0077.10.804033
MA0078.10.575205
MA0081.10.338098
MA0083.10.917931
MA0084.11.49188
MA0087.10.87515
MA0088.10.413524
MA0089.10
MA0090.10.362551
MA0091.10.407455
MA0092.10.362847
MA0093.10.2553
MA0095.10
MA0098.10
MA0100.10.477594
MA0101.10.324888
MA0103.10.748482
MA0105.10.720048
MA0106.10.582805
MA0107.10.266586
MA0108.20.665343
MA0109.10
MA0111.10.980871
MA0113.10.555251
MA0114.10.19245
MA0115.10.921497
MA0116.11.24629
MA0117.10.88947
MA0119.10.325434
MA0122.10.909168
MA0124.11.11203
MA0125.11.03833
MA0130.10
MA0131.10.638414
MA0132.10
MA0133.10
MA0135.10.954884
MA0136.10.508047
MA0139.10.143341
MA0140.10.477483
MA0141.10.789442
MA0142.10.714976
MA0143.10.571221
MA0144.10.195095
MA0145.10.77191
MA0146.10.0548413
MA0147.10.205697
MA0148.10.410398
MA0149.10.330018
MA0062.20.365726
MA0035.20.482026
MA0039.20.618828
MA0138.20.630612
MA0002.20.145685
MA0137.20.783415
MA0104.20.157347
MA0047.20.533516
MA0112.20.442124
MA0065.20.773848
MA0150.10.380623
MA0151.10
MA0152.10.53362
MA0153.10.971406
MA0154.12.01498
MA0155.10.845235
MA0156.10.763978
MA0157.10.683365
MA0158.10
MA0159.13.3601
MA0160.11.06259
MA0161.10
MA0162.10.875406
MA0163.10.321031
MA0164.10.508398
MA0080.20.267388
MA0018.20.51781
MA0099.20.624421
MA0079.20.670082
MA0102.21.5442
MA0258.10.533988
MA0259.10.196451
MA0442.10
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