FFCP PHASE1:Hg19::chr15:67458491..67458505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=strong | |||
|UniProt=F5H383 | |||
|association_with_transcript=0bp_to_NM_001145104,uc010ujt.1_5end | |||
|description=CAGE_peak_18_at_SMAD3_5end | |||
|id=chr15:67458491..67458505,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.00e-24!32;CL:0000192!1.59e-23!42;CL:0000514!1.59e-23!42;CL:0000393!2.71e-23!60;CL:0000211!2.71e-23!60;CL:0000183!1.17e-22!59;CL:0000187!1.09e-21!54;CL:0000680!7.15e-20!57;CL:0000056!7.15e-20!57;CL:0000355!7.15e-20!57;CL:0000222!2.19e-16!119;CL:0000055!1.28e-15!180;CL:0002321!1.97e-10!248;CL:0000220!8.70e-10!246;CL:0002539!2.61e-09!10;CL:0000327!2.30e-08!14;CL:0002595!3.41e-08!5;CL:0002494!2.55e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.68e-29;32!CL:0002595;6.92e-17;5!CL:0000192;1.01e-16;43!CL:0000327;4.60e-12;15!CL:0002592;2.74e-10;3!CL:0000708;8.57e-10;3!CL:0000187;9.14e-09;55!CL:0000153;1.25e-08;9!CL:0000447;1.25e-08;9!CL:0002494;2.16e-08;16!CL:0000393;5.97e-08;61!CL:0000211;5.97e-08;61!CL:0002593;8.09e-08;2!CL:0002596;1.10e-07;2!CL:0002589;1.68e-07;2!CL:0000499;2.25e-07;28!CL:0000569;2.63e-07;4!CL:0002539;3.26e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,5.35e-31,32;CL:0000192,1.02e-21,43;CL:0000514,1.02e-21,43;CL:0002595,6.75e-17,5;CL:0000187,7.40e-16,55;CL:0000393,2.19e-15,61;CL:0000211,2.19e-15,61;CL:0000680,8.90e-15,58;CL:0000056,8.90e-15,58;CL:0000355,8.90e-15,58;CL:0000222,1.83e-13,121;CL:0000327,6.07e-12,15;CL:0002592,2.32e-10,3;CL:0000708,8.87e-10,3;CL:0002321,4.84e-09,250;CL:0000153,1.65e-08,9;CL:0000447,1.65e-08,9;CL:0002494,1.95e-08,16;CL:0002593,8.37e-08,2;CL:0002596,1.12e-07,2;CL:0002589,1.79e-07,2;CL:0000569,2.18e-07,4;CL:0000011,2.18e-07,4;CL:0000499,2.59e-07,28;CL:0002539,3.48e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.01e-16;43!CL:0000355;5.55e-08;58!CL:0000011;2.63e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.66e-31!79;UBERON:0007798!1.66e-31!79;UBERON:0001637!2.70e-28!42;UBERON:0003509!2.70e-28!42;UBERON:0004572!2.70e-28!42;UBERON:0004535!1.24e-26!110;UBERON:0001009!2.42e-26!113;UBERON:0004872!4.12e-26!84;UBERON:0004573!1.17e-25!33;UBERON:0004571!1.17e-25!33;UBERON:0001981!1.36e-25!60;UBERON:0007500!1.36e-25!60;UBERON:0004537!1.36e-25!60;UBERON:0006965!1.36e-25!60;UBERON:0000055!7.21e-24!69;UBERON:0001134!3.78e-22!61;UBERON:0002036!3.78e-22!61;UBERON:0003082!3.78e-22!61;UBERON:0002385!5.27e-21!63;UBERON:0001015!5.27e-21!63;UBERON:0000383!5.27e-21!63;UBERON:0003914!7.79e-21!118;UBERON:0000119!1.36e-18!312;UBERON:0000477!2.59e-18!286;UBERON:0004290!1.52e-17!70;UBERON:0000486!3.92e-17!82;UBERON:0000914!4.24e-17!83;UBERON:0002329!4.24e-17!83;UBERON:0003077!4.24e-17!83;UBERON:0003059!4.24e-17!83;UBERON:0007282!4.24e-17!83;UBERON:0009618!4.24e-17!83;UBERON:0007285!4.24e-17!83;UBERON:0000483!7.07e-17!309;UBERON:0000490!5.64e-15!138;UBERON:0000025!5.73e-15!194;UBERON:0004111!4.33e-14!241;UBERON:0005256!1.08e-13!143;UBERON:0000947!1.45e-11!21;UBERON:0010191!1.45e-11!21;UBERON:0000481!2.06e-09!347;UBERON:0004237!2.61e-09!10;UBERON:0004695!2.61e-09!10;UBERON:0002111!2.61e-09!10;UBERON:0004178!2.61e-09!10;UBERON:0000922!2.96e-09!612;UBERON:0001135!3.07e-09!15;UBERON:0000468!1.28e-08!659;UBERON:0002200!1.57e-08!11;UBERON:0006876!1.57e-08!11;UBERON:0003834!3.41e-08!5;UBERON:0001533!3.41e-08!5;UBERON:0000923!2.91e-07!604;UBERON:0005291!2.91e-07!604;UBERON:0006598!2.91e-07!604;UBERON:0002532!2.91e-07!604;UBERON:0003103!3.38e-07!69;UBERON:0002050!3.44e-07!605;UBERON:0005423!3.44e-07!605;UBERON:0003135!4.37e-07!11;UBERON:0003081!5.34e-07!216;UBERON:0000467!6.73e-07!625;UBERON:0000480!7.90e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.26e-23;33!UBERON:0004571;3.26e-23;33!UBERON:0001637;1.92e-19;42!UBERON:0003509;1.92e-19;42!UBERON:0004572;1.92e-19;42!UBERON:0003834;6.92e-17;5!UBERON:0001533;6.92e-17;5!UBERON:0003513;6.25e-12;7!UBERON:0002049;3.88e-11;75!UBERON:0007798;3.88e-11;75!UBERON:0007500;1.07e-10;56!UBERON:0001981;1.07e-10;56!UBERON:0004537;1.07e-10;56!UBERON:0003498;2.74e-10;3!UBERON:0005985;2.74e-10;3!UBERON:0001621;2.74e-10;3!UBERON:0003914;3.00e-10;74!UBERON:0003210;8.57e-10;3!UBERON:0000055;1.23e-08;65!UBERON:0002456;8.09e-08;2!UBERON:0005396;1.10e-07;2!UBERON:0001529;1.68e-07;2!UBERON:0007204;1.68e-07;2!UBERON:0004237;3.26e-07;10!UBERON:0004695;3.26e-07;10!UBERON:0002111;3.26e-07;10!UBERON:0004178;3.26e-07;10!UBERON:0005090;3.38e-07;2!UBERON:0001630;3.38e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.26e-27,42;UBERON:0003509,2.26e-27,42;UBERON:0004572,2.26e-27,42;UBERON:0004573,1.72e-26,33;UBERON:0004571,1.72e-26,33;UBERON:0002049,7.59e-25,78;UBERON:0007798,7.59e-25,78;UBERON:0007500,8.03e-24,59;UBERON:0001981,8.03e-24,59;UBERON:0004537,8.03e-24,59;UBERON:0006965,8.03e-24,59;UBERON:0004872,2.66e-23,83;UBERON:0004535,2.40e-21,109;UBERON:0001009,1.54e-20,112;UBERON:0000055,8.44e-20,68;UBERON:0001134,9.01e-19,62;UBERON:0002036,9.01e-19,62;UBERON:0003082,9.01e-19,62;UBERON:0002385,5.35e-18,64;UBERON:0001015,5.35e-18,64;UBERON:0000383,5.35e-18,64;UBERON:0003834,6.75e-17,5;UBERON:0001533,6.75e-17,5;UBERON:0003914,6.80e-17,117;UBERON:0002329,1.22e-15,71;UBERON:0003059,1.22e-15,71;UBERON:0007282,1.22e-15,71;UBERON:0004290,1.22e-15,71;UBERON:0009618,1.22e-15,71;UBERON:0003077,2.42e-15,72;UBERON:0007285,2.42e-15,72;UBERON:0000486,2.69e-15,83;UBERON:0007524,4.72e-15,73;UBERON:0007503,1.03e-13,78;UBERON:0003513,6.15e-12,7;UBERON:0001621,2.32e-10,3;UBERON:0003210,8.87e-10,3;UBERON:0000119,2.88e-09,309;UBERON:0000025,9.90e-09,192;UBERON:0003081,1.42e-08,203;UBERON:0005256,1.60e-08,122;UBERON:0000490,3.53e-08,148;UBERON:0002456,8.37e-08,2;UBERON:0005396,1.12e-07,2;UBERON:0000483,1.68e-07,306;UBERON:0001529,1.79e-07,2;UBERON:0007204,1.79e-07,2;UBERON:0003104,3.37e-07,160;UBERON:0009142,3.37e-07,160;UBERON:0004237,3.48e-07,10;UBERON:0004695,3.48e-07,10;UBERON:0002111,3.48e-07,10;UBERON:0004178,3.48e-07,10;UBERON:0005090,3.66e-07,2;UBERON:0001630,3.66e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,0.602694528023977,1.46062018077475,0.487932798790507,3.81675280038043,4.48801520737357,0.626909442956176,0,0.821246550437305,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.14446559053763,7.52006865953834,6.37324683427624,0,0.973269740605272,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.79504962946682,0.860234595106124,0.694281003215189,0,1.25849830862972,0,0.835979866147242,0.258416759169329,0,0.66944122552934,0,0,0,0,0,1.42879565254528,0.22452937262617,1.12611480483322,0,0.949265659568129,4.39684185432977,0,0,0,1.49091585508596,0.886413581652058,0,0.573673241497627,0.709336764396714,0,0,1.2333377420858,0.311211035399766,0.269421344139376,0.163461903113459,1.05950199351452,1.72852777344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0.226864366320042,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0.969876340912871,0,0,0,0,0.818238361772504,0,0.487894824518382,0.132529768321485,0.69716365721711,1.24393266018445,1.26160425437814,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,1.02940686179115,0,0,0,0.277765335475589,0,0,0,0.231860809950154,0.352226082707465,0,0,0.190254152234598,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,2.13049060256185,8.7192013766656,1.39342743059805,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.958499421966331,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.328508624055237,0,0,0,0,0,0.114814448164607,0,0.393373244878272,0.902399225814824,0.616122696835318,0.784349769176855,5.84556898613043,1.47772280450026,0,0.170093705276516,0,0,0,0,0,0,1.56712328305525,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.386682873168488,0.462145851343933,0.460511024178389,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.94443704049192,3.485186350803,4.62050370264133,1.06461206063404,2.60979897622522,10.0075078316117,3.14874750832381,0.372158369359667,0.632758849437452,0.190630193923825,0,0,6.36406495851874,8.63443504219153,0.179872457583315,0.274537029736055,0.353437207037059,2.83055474202642,11.0957224821106,4.63384301862879,0.975267478179181,14.6228093778771,8.45201174054043,0.272999822815972,0,0,7.71911480964574,16.5859743810305,6.57676327880644,0,0,2.43492452355245,0,0.845086807596724,0,0,3.5667105148125,0,1.05553817648832,4.28083360847872,1.13841952129715,1.04980416073495,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,0,0,1.1249555075237,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,2.40773294189637,0,0,0,0,0,0,0,2.84339608328196,0,0,0,0,0,0,4.55375273647668,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,1.80784592624426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,0,0,0,0,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0.160753148465019,0.550157746388935,1.24632101408756,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,4.92447813715232,1.25783950876288,3.55924488638614,0.228840068396924,4.23446586537069,2.64243240990727,1.62640664988597,0,0,0.776314784381297,0,0,0,0,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371807292777007,0,2.86203915588077,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0,0,0,0,0,0,0,0,0,4.46590060550365,0,0,0.535701835878287,0.336283722218824,0.606965604236632,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,1.50100742770978,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,4.53200186031526,2.46390736454993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0.883164973845552,0,0,1.83579893535567,0,1.47031839255752,0.50141507858475,0.0757786982182394,0.267964130156178,0,0,1.49263787330687,0,0,0,0,0.318235791390825,0.606351566874658,0.653150243690884,1.36893320434112,0.0673520530145875,0.430333232356058,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p18@SMAD3 | |||
}} |
Revision as of 00:13, 12 January 2014
Short description: | p18@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001145104, uc010ujt.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | F5H383 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 5.35e-31 | 32 |
smooth muscle cell | 1.02e-21 | 43 |
smooth muscle myoblast | 1.02e-21 | 43 |
smooth muscle cell of the subclavian artery | 6.75e-17 | 5 |
muscle cell | 7.40e-16 | 55 |
electrically responsive cell | 2.19e-15 | 61 |
electrically active cell | 2.19e-15 | 61 |
muscle precursor cell | 8.90e-15 | 58 |
myoblast | 8.90e-15 | 58 |
multi-potent skeletal muscle stem cell | 8.90e-15 | 58 |
mesodermal cell | 1.83e-13 | 121 |
extracellular matrix secreting cell | 6.07e-12 | 15 |
smooth muscle cell of the coronary artery | 2.32e-10 | 3 |
leptomeningeal cell | 8.87e-10 | 3 |
embryonic cell | 4.84e-09 | 250 |
GAG secreting cell | 1.65e-08 | 9 |
carbohydrate secreting cell | 1.65e-08 | 9 |
cardiocyte | 1.95e-08 | 16 |
smooth muscle cell of the internal thoracic artery | 8.37e-08 | 2 |
smooth muscle cell of the carotid artery | 1.12e-07 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 1.79e-07 | 2 |
cardiac mesenchymal cell | 2.18e-07 | 4 |
migratory trunk neural crest cell | 2.18e-07 | 4 |
stromal cell | 2.59e-07 | 28 |
aortic smooth muscle cell | 3.48e-07 | 10 |