FFCP PHASE1:Hg19::chr16:420514..420555,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10573 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14484 | |||
|TSSclassifier=strong | |||
|UniProt=Q13084 | |||
|association_with_transcript=0bp_to_ENST00000199706,ENST00000481453,uc002cgs.1,uc002cgt.1_5end | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_MRPL28_5end | |||
|id=chr16:420514..420555,- | |||
|ontology_enrichment_celltype=CL:0000222!9.33e-22!119;CL:0000220!8.93e-21!246;CL:0002321!3.95e-20!248;CL:0000066!5.03e-16!254;CL:0000183!2.91e-15!59;CL:0000548!1.22e-14!679;CL:0000004!1.22e-14!679;CL:0000255!1.22e-14!679;CL:0000012!2.17e-14!682;CL:0000187!6.37e-13!54;CL:0000680!2.31e-12!57;CL:0000056!2.31e-12!57;CL:0000355!2.31e-12!57;CL:0000192!1.68e-11!42;CL:0000514!1.68e-11!42;CL:0000393!4.09e-11!60;CL:0000211!4.09e-11!60;CL:0000055!2.81e-10!180;CL:0000213!1.22e-09!57;CL:0000215!1.22e-09!57;CL:0000144!1.17e-08!625;CL:0000359!1.60e-08!32;CL:0002371!3.77e-08!591;CL:0002078!6.86e-08!44;CL:1000449!4.33e-07!16;CL:0000076!4.99e-07!62;CL:0000115!8.69e-07!35;CL:1000497!9.47e-07!18;CL:0002518!9.47e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.85e-08;43!CL:0000359;4.83e-08;32!CL:0000187;1.91e-07;55!CL:1000449;2.49e-07;15!CL:1000497;6.79e-07;17!CL:0002518;6.79e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.02e-22,121;CL:0002321,1.64e-20,250;CL:0000066,5.31e-16,253;CL:0000187,7.92e-13,55;CL:0000680,2.78e-12,58;CL:0000056,2.78e-12,58;CL:0000355,2.78e-12,58;CL:0000192,2.19e-11,43;CL:0000514,2.19e-11,43;CL:0000393,4.69e-11,61;CL:0000211,4.69e-11,61;CL:0000213,5.25e-10,58;CL:0000215,5.25e-10,58;CL:0000359,1.60e-08,32;CL:0002078,2.97e-08,45;CL:1000449,2.56e-07,15;CL:0000115,3.75e-07,36;CL:0000076,3.78e-07,63;CL:1000497,6.29e-07,17;CL:0002518,6.29e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;2.85e-08;43!CL:0000355;6.21e-07;58!CL:0000222;9.72e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.60e-16!83;UBERON:0002329!6.60e-16!83;UBERON:0003077!6.60e-16!83;UBERON:0003059!6.60e-16!83;UBERON:0007282!6.60e-16!83;UBERON:0009618!6.60e-16!83;UBERON:0007285!6.60e-16!83;UBERON:0000486!6.71e-16!82;UBERON:0004290!1.25e-15!70;UBERON:0005256!4.31e-15!143;UBERON:0003104!3.01e-13!238;UBERON:0009142!3.01e-13!238;UBERON:0001134!4.59e-13!61;UBERON:0002036!4.59e-13!61;UBERON:0003082!4.59e-13!61;UBERON:0003914!5.78e-13!118;UBERON:0002100!1.24e-12!216;UBERON:0000490!1.74e-12!138;UBERON:0000119!3.77e-12!312;UBERON:0002385!4.36e-12!63;UBERON:0001015!4.36e-12!63;UBERON:0000383!4.36e-12!63;UBERON:0000483!6.36e-12!309;UBERON:0002049!7.54e-11!79;UBERON:0007798!7.54e-11!79;UBERON:0004872!1.48e-10!84;UBERON:0001981!2.16e-10!60;UBERON:0007500!2.16e-10!60;UBERON:0004537!2.16e-10!60;UBERON:0006965!2.16e-10!60;UBERON:0000055!2.82e-10!69;UBERON:0000481!5.41e-10!347;UBERON:0001637!3.71e-09!42;UBERON:0003509!3.71e-09!42;UBERON:0004572!3.71e-09!42;UBERON:0008947!3.54e-07!38;UBERON:0003258!3.54e-07!38;UBERON:0000072!3.57e-07!46;UBERON:0001009!4.09e-07!113;UBERON:0004211!4.33e-07!16;UBERON:0001285!4.33e-07!16;UBERON:0007684!4.33e-07!16;UBERON:0003220!4.33e-07!16;UBERON:0004208!4.33e-07!16;UBERON:0001851!6.55e-07!16;UBERON:0000064!8.35e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;2.74e-08;74!UBERON:0000072;4.48e-08;37!UBERON:0006555;2.49e-07;15!UBERON:0004819;2.49e-07;15!UBERON:0001285;2.49e-07;15!UBERON:0007684;2.49e-07;15!UBERON:0001851;3.84e-07;15!UBERON:0007500;4.10e-07;56!UBERON:0001981;4.10e-07;56!UBERON:0004537;4.10e-07;56!UBERON:0000025;4.68e-07;93!UBERON:0000353;9.66e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,9.40e-19,78;UBERON:0000486,7.77e-16,83;UBERON:0002329,1.52e-15,71;UBERON:0003059,1.52e-15,71;UBERON:0007282,1.52e-15,71;UBERON:0004290,1.52e-15,71;UBERON:0009618,1.52e-15,71;UBERON:0007524,3.84e-15,73;UBERON:0003077,5.15e-15,72;UBERON:0007285,5.15e-15,72;UBERON:0000490,9.49e-15,148;UBERON:0003104,1.67e-13,160;UBERON:0009142,1.67e-13,160;UBERON:0001134,5.50e-13,62;UBERON:0002036,5.50e-13,62;UBERON:0003082,5.50e-13,62;UBERON:0003914,5.61e-13,117;UBERON:0002100,3.91e-12,199;UBERON:0005256,4.23e-12,122;UBERON:0002385,5.05e-12,64;UBERON:0001015,5.05e-12,64;UBERON:0000383,5.05e-12,64;UBERON:0000119,6.87e-12,309;UBERON:0000483,1.15e-11,306;UBERON:0002049,5.46e-11,78;UBERON:0007798,5.46e-11,78;UBERON:0004872,1.10e-10,83;UBERON:0007500,1.44e-10,59;UBERON:0001981,1.44e-10,59;UBERON:0004537,1.44e-10,59;UBERON:0006965,1.44e-10,59;UBERON:0000055,1.99e-10,68;UBERON:0001637,3.71e-09,42;UBERON:0003509,3.71e-09,42;UBERON:0004572,3.71e-09,42;UBERON:0004211,2.56e-07,15;UBERON:0009773,2.56e-07,15;UBERON:0001231,2.56e-07,15;UBERON:0001285,2.56e-07,15;UBERON:0007684,2.56e-07,15;UBERON:0004208,2.56e-07,15;UBERON:0001009,3.52e-07,112;UBERON:0008947,3.54e-07,38;UBERON:0003258,3.54e-07,38;UBERON:0000072,3.90e-07,47;UBERON:0001851,3.96e-07,15;UBERON:0000353,9.03e-07,15 | |||
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| |||
|short_description=p1@MRPL28 | |||
}} |
Revision as of 01:38, 12 January 2014
Short description: | p1@MRPL28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MRPL28_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 0bp_to_ENST00000199706, ENST00000481453, uc002cgs.1, uc002cgt.1_5end |
EntrezGene: | MRPL28 |
HGNC: | 14484 |
UniProt: | Q13084 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.02e-22 | 121 |
embryonic cell | 1.64e-20 | 250 |
epithelial cell | 5.31e-16 | 253 |
muscle cell | 7.92e-13 | 55 |
muscle precursor cell | 2.78e-12 | 58 |
myoblast | 2.78e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.78e-12 | 58 |
smooth muscle cell | 2.19e-11 | 43 |
smooth muscle myoblast | 2.19e-11 | 43 |
electrically responsive cell | 4.69e-11 | 61 |
electrically active cell | 4.69e-11 | 61 |
lining cell | 5.25e-10 | 58 |
barrier cell | 5.25e-10 | 58 |
vascular associated smooth muscle cell | 1.60e-08 | 32 |
meso-epithelial cell | 2.97e-08 | 45 |
epithelial cell of nephron | 2.56e-07 | 15 |
endothelial cell | 3.75e-07 | 36 |
squamous epithelial cell | 3.78e-07 | 63 |
kidney cell | 6.29e-07 | 17 |
kidney epithelial cell | 6.29e-07 | 17 |