FFCP PHASE1:Hg19::chr19:1248568..1248608,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90007 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16298 | |||
|TSSclassifier=strong | |||
|UniProt=Q504T8 | |||
|association_with_transcript=16bp_to_ENST00000300952,NM_177401,uc002lrp.2_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_MIDN_5end | |||
|id=chr19:1248568..1248608,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.88e-25!42;CL:0000860!1.71e-24!45;CL:0000766!1.09e-21!76;CL:0000557!6.91e-18!71;CL:0002009!2.73e-16!65;CL:0002194!1.86e-15!63;CL:0000576!1.86e-15!63;CL:0000040!1.86e-15!63;CL:0000559!1.86e-15!63;CL:0000839!2.61e-15!70;CL:0000763!4.68e-08!112;CL:0000049!4.68e-08!112;CL:0000094!9.88e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.05e-19;33!CL:0002057;6.05e-19;33!CL:0000473;1.52e-14;39!CL:0000234;1.52e-14;39!CL:0000576;1.31e-11;48!CL:0000766;4.04e-11;69!CL:0000094;9.67e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.88e-25,42;CL:0002057,3.88e-25,42;CL:0000473,2.57e-23,48;CL:0000234,2.57e-23,48;CL:0000766,5.26e-22,72;CL:0000557,3.97e-18,67;CL:0002009,1.56e-16,61;CL:0002194,1.09e-15,59;CL:0000576,1.09e-15,59;CL:0000040,1.09e-15,59;CL:0000559,1.09e-15,59;CL:0000839,1.79e-15,66;CL:0000763,6.20e-08,108;CL:0000049,6.20e-08,108;CL:0000094,9.88e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.38e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.08e-18!216;UBERON:0000480!7.34e-18!626;UBERON:0000467!1.29e-17!625;UBERON:0002371!2.19e-17!80;UBERON:0000468!4.81e-17!659;UBERON:0002390!5.24e-17!102;UBERON:0003061!5.24e-17!102;UBERON:0002193!7.58e-17!112;UBERON:0001474!1.85e-16!86;UBERON:0000922!2.46e-15!612;UBERON:0000923!3.95e-15!604;UBERON:0005291!3.95e-15!604;UBERON:0006598!3.95e-15!604;UBERON:0002532!3.95e-15!604;UBERON:0000926!4.25e-15!448;UBERON:0004120!4.25e-15!448;UBERON:0006603!4.25e-15!448;UBERON:0002050!6.09e-15!605;UBERON:0005423!6.09e-15!605;UBERON:0002405!6.63e-15!115;UBERON:0004765!1.13e-12!101;UBERON:0001434!1.13e-12!101;UBERON:0000062!8.33e-12!511;UBERON:0002204!1.73e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.54e-17,76;UBERON:0003081,4.55e-17,203;UBERON:0002390,4.91e-17,98;UBERON:0003061,4.91e-17,98;UBERON:0002193,7.76e-17,108;UBERON:0001474,1.50e-16,82;UBERON:0002405,5.18e-15,93;UBERON:0004765,5.48e-15,90;UBERON:0000922,6.20e-15,592;UBERON:0005423,5.23e-14,581;UBERON:0000923,3.00e-13,560;UBERON:0010316,3.00e-13,560;UBERON:0005291,3.00e-13,560;UBERON:0006598,3.00e-13,560;UBERON:0010317,3.00e-13,560;UBERON:0002532,3.00e-13,560;UBERON:0001434,8.01e-13,100;UBERON:0002050,1.76e-12,564;UBERON:0000926,3.77e-11,315;UBERON:0004120,3.77e-11,315;UBERON:0006603,3.77e-11,315;UBERON:0002204,1.52e-07,167 | |||
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| |||
|short_description=p2@MIDN | |||
}} |
Revision as of 20:13, 20 January 2014
Short description: | p2@MIDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MIDN_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 16bp_to_ENST00000300952, NM_177401, uc002lrp.2_5end |
EntrezGene: | MIDN |
HGNC: | 16298 |
UniProt: | Q504T8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.88e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.88e-25 | 42 |
defensive cell | 2.57e-23 | 48 |
phagocyte | 2.57e-23 | 48 |
myeloid leukocyte | 5.26e-22 | 72 |
granulocyte monocyte progenitor cell | 3.97e-18 | 67 |
macrophage dendritic cell progenitor | 1.56e-16 | 61 |
monopoietic cell | 1.09e-15 | 59 |
monocyte | 1.09e-15 | 59 |
monoblast | 1.09e-15 | 59 |
promonocyte | 1.09e-15 | 59 |
myeloid lineage restricted progenitor cell | 1.79e-15 | 66 |
myeloid cell | 6.20e-08 | 108 |
common myeloid progenitor | 6.20e-08 | 108 |
granulocyte | 9.88e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.54e-17 | 76 |
lateral plate mesoderm | 4.55e-17 | 203 |
hematopoietic system | 4.91e-17 | 98 |
blood island | 4.91e-17 | 98 |
hemolymphoid system | 7.76e-17 | 108 |
bone element | 1.50e-16 | 82 |
immune system | 5.18e-15 | 93 |
skeletal element | 5.48e-15 | 90 |
embryo | 6.20e-15 | 592 |
developing anatomical structure | 5.23e-14 | 581 |
germ layer | 3.00e-13 | 560 |
germ layer / neural crest | 3.00e-13 | 560 |
embryonic tissue | 3.00e-13 | 560 |
presumptive structure | 3.00e-13 | 560 |
germ layer / neural crest derived structure | 3.00e-13 | 560 |
epiblast (generic) | 3.00e-13 | 560 |
skeletal system | 8.01e-13 | 100 |
embryonic structure | 1.76e-12 | 564 |
mesoderm | 3.77e-11 | 315 |
mesoderm-derived structure | 3.77e-11 | 315 |
presumptive mesoderm | 3.77e-11 | 315 |
musculoskeletal system | 1.52e-07 | 167 |