FFCP PHASE1:Hg19::chr19:7587555..7587570,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13356 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=43bp_to_uc002mgo.2,uc002mgp.2,uc010dvh.1_5end | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_2_at_MCOLN1_5end | |||
|id=chr19:7587555..7587570,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.18e-26!76;CL:0002057!4.20e-24!42;CL:0002194!4.22e-24!63;CL:0000576!4.22e-24!63;CL:0000040!4.22e-24!63;CL:0000559!4.22e-24!63;CL:0000860!4.66e-24!45;CL:0000839!1.53e-23!70;CL:0002009!6.02e-23!65;CL:0000557!9.87e-21!71;CL:0000763!1.60e-10!112;CL:0000049!1.60e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.70e-20;33!CL:0002057;6.70e-20;33!CL:0000473;9.41e-20;39!CL:0000234;9.41e-20;39!CL:0000576;1.19e-15;48!CL:0000766;9.49e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.20e-28,48;CL:0000234,1.20e-28,48;CL:0000766,2.77e-28,72;CL:0002194,3.01e-26,59;CL:0000576,3.01e-26,59;CL:0000040,3.01e-26,59;CL:0000559,3.01e-26,59;CL:0000839,1.76e-25,66;CL:0002009,5.67e-25,61;CL:0000860,6.66e-25,42;CL:0002057,6.66e-25,42;CL:0000557,1.11e-22,67;CL:0000763,1.54e-11,108;CL:0000049,1.54e-11,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.25e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.75e-21!112;UBERON:0002390!1.41e-20!102;UBERON:0003061!1.41e-20!102;UBERON:0002371!1.25e-18!80;UBERON:0002405!1.94e-18!115;UBERON:0000468!8.61e-18!659;UBERON:0001474!2.59e-17!86;UBERON:0003081!7.90e-17!216;UBERON:0000467!8.67e-16!625;UBERON:0000480!1.49e-15!626;UBERON:0004765!4.74e-14!101;UBERON:0001434!4.74e-14!101;UBERON:0000923!3.62e-13!604;UBERON:0005291!3.62e-13!604;UBERON:0006598!3.62e-13!604;UBERON:0002532!3.62e-13!604;UBERON:0002050!6.68e-13!605;UBERON:0005423!6.68e-13!605;UBERON:0000922!3.93e-12!612;UBERON:0007023!2.02e-11!115;UBERON:0000062!2.44e-11!511;UBERON:0002204!1.67e-10!167;UBERON:0000926!8.08e-10!448;UBERON:0004120!8.08e-10!448;UBERON:0006603!8.08e-10!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.31e-23,108;UBERON:0002390,1.77e-22,98;UBERON:0003061,1.77e-22,98;UBERON:0002405,4.39e-21,93;UBERON:0002371,2.92e-20,76;UBERON:0003081,6.06e-20,203;UBERON:0001474,5.77e-19,82;UBERON:0004765,2.47e-17,90;UBERON:0000926,1.10e-15,315;UBERON:0004120,1.10e-15,315;UBERON:0006603,1.10e-15,315;UBERON:0001434,1.96e-14,100;UBERON:0002050,1.01e-13,564;UBERON:0000923,1.43e-13,560;UBERON:0010316,1.43e-13,560;UBERON:0005291,1.43e-13,560;UBERON:0006598,1.43e-13,560;UBERON:0010317,1.43e-13,560;UBERON:0002532,1.43e-13,560;UBERON:0005423,8.46e-12,581;UBERON:0007023,2.84e-11,114;UBERON:0000922,1.58e-10,592;UBERON:0002204,2.79e-10,167 | |||
|phase1_expression=7.99384868790449,11.7755288140041,6.76581139660662,4.00293193412522,11.6209884551095,3.48935409640147,2.53299878168311,3.79031924056099,4.44015567939725,2.45733936501509,0.697801167972428,3.27662058195258,9.23184423799587,0.37129905888014,1.32558950291166,4.03395087871065,2.41077811209591,2.92124036154949,2.92759679274304,1.84681587115182,2.65200898617529,1.25381888591235,0.85870796139317,1.36874425072884,0.753255837568817,0.229240217243854,0.0821005894499457,0.236132343941038,29.1089564868189,1.91914699048606,6.50227717927519,0,1.50602959389125,1.10926203050036,1.16200800870452,0.568676929949686,0,2.76997704265939,3.81034450193269,4.34021741431704,110.614244274523,93.6052694794851,106.893860568187,22.5367270108325,31.74157926986,32.5062641991674,48.3452396763824,66.6091978595358,121.095191019985,37.1123186095574,32.7885704357249,34.762887793622,67.9148991051139,77.4581620300591,125.946632532738,50.8254316765033,59.2206345625525,49.4391665779186,46.8308355327481,58.7300119549251,74.1631065926888,14.1836059080288,25.3318845179472,21.7374622771674,21.1852744198866,39.1495805036886,41.7290906827035,66.8321449582937,52.1482918420201,58.8581769150866,21.7943820948013,30.1987661509803,32.5956259064111,13.9428488965882,15.5201138974482,10.063614984402,7.52601828681517,4.6554836780867,3.69668849403284,17.3857773682162,14.5209174355336,14.4304681474061,0,0,0,0.853460445133014,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0,0,1.68152568894461,0.263384084775077,0.393419540227666,0.786021525498329,0.411202997999018,0.501559486172034,0,0,0,0.557052284425868,1.17842362989935,0.221533894583621,0,0.384273959177026,0.520237390239513,0.493313713811028,0,0,0.444859689486181,0.267540828089713,2.09071047609954,0.226618685395132,0,0.34362744548263,0,0.318565414324097,0,0,0.903450714466637,0.127986611154418,1.24930726552346,0.236777252044017,0,0.201606743224732,0.534880391567015,0.289648807765598,0,0.670700859703636,1.02290049474824,1.0843174571537,4.01070328508712,0.869079113764942,0.795285947051099,1.45990461090791,0.567208902984407,0.443458794925128,1.31752178539689,3.01251873644739,0.728590576585084,1.11235332835329,10.3855165969499,11.1443031871531,18.2152405910845,1.66943437013739,1.71598473234038,0.74291500265913,2.38514888840046,2.58070378531837,1.73570250803797,1.69592382577203,5.45349267072878,3.30141650328081,3.9709043641994,5.16833518338658,6.40379272836078,2.34304428935269,4.83395180530976,2.28081631715554,6.10155143870424,1.10298924103761,4.0507097394088,0.714397826272638,1.12264686313085,0.337834441449967,1.53316637465883,4.74632829784064,1.46561395144326,40.8519294051796,38.7780264148325,0.872188104285069,1.49091585508596,2.40597972162702,5.56118559415519,5.44989579422746,1.06400514659507,2.80338800071154,3.20246987189115,6.90669135568048,2.8008993185979,3.09834545760283,2.28846664358842,2.27036141467397,0,0.70296429550139,2.18512053781224,0.570471821544449,2.24173020827702,0.469737994575059,0.485618833104395,0.561803226808994,1.02077085627447,0.61417158655884,2.6864703105699,4.75201142912821,3.4617370098998,2.73048408581408,2.15585442544872,0.336672227908132,0.625592599359821,0.831192346452549,1.31693286264251,2.75839016219118,2.85452311922534,2.38207584636044,1.61450672119976,1.70845911054854,1.48352330811693,5.10154863343484,0.92747276314595,1.8034837803194,1.8611685633159,0.675105328965065,1.55899208257918,2.01947019395292,2.02509777013059,1.93975268182574,4.26011511019937,2.01504196455281,1.18692414617341,5.21804303540901,3.81844568827169,3.15485054927904,0.487894824518382,0.397589304964456,0.464775771478074,1.55491582523056,1.00928340350251,0,3.12899064659632,3.21620469096443,4.14404764057442,3.25057549622385,2.88751792667834,8.99131680302814,6.57480291304597,6.50729780685401,9.70586960045067,6.75426276686459,5.45722423955522,10.651673344653,7.2601942096378,6.92544882503503,4.42893272774789,0,2.8810180793198,5.88034845542168,1.26755034821831,7.86261773342101,6.49868897349544,0.882926198829301,0.737930631258681,1.71567810298526,1.75600456653801,1.1240175325762,0.402115889646523,0.0925884451585296,1.3032332212413,2.07986957055916,1.44331342025273,1.507095264676,1.6437217193015,2.59859605969933,3.24089858803628,2.66355813128438,0.790204397959275,3.43394464837949,29.7922577365751,7.95614501473408,14.2685915797179,4.68669169933885,3.19166043577833,1.55952606966625,0.358234090811393,0.581267877027924,0.766765358330422,1.97065295158377,2.64145302039678,1.4512968087854,1.72943944100354,2.27236380167484,15.8744735730423,19.8633981290304,53.9200257166216,20.5286935227246,12.2364716316955,9.31063479316144,27.4393375325355,1.45770409648969,1.74384027533312,1.1734125731352,4.52451005152222,17.8828222925941,0.845302752556,6.64845291462176,7.28052058379563,2.31486636835928,1.41849132023278,0.799266537048298,2.28764789853036,5.96883765930587,0.823240336780769,2.60588947434988,3.909311436168,0.791951872933429,4.82303003295338,6.10073421020206,1.99945982364114,70.5417927718905,77.8498491719796,33.7334303172851,4.0736225433569,4.59447743336456,4.27910715122155,5.64647096003559,3.28762116080613,4.83464600747718,2.24170287987055,0.394061520403854,0.215627574859517,0.641715181398742,0.76228387266739,1.30139853857622,1.54657762555539,1.34013012267479,1.91381625495949,8.23907726341901,8.97484377612075,12.018049889645,0.24538298343828,2.00068208423871,2.44138521329762,4.57535895367776,4.28229573113188,5.04647728108591,1.99140405487612,2.70851489754947,6.82222512167955,1.03473071292505,0.664225598535437,2.39679919104214,2.69339204851057,8.61525092836058,3.77457766191941,2.89475236572042,3.45142721309787,3.94891963872744,13.6407407150817,18.3078983461547,4.83824469327489,5.70647957983187,6.75232682467475,5.05188169979532,4.74114852246094,11.2575594794675,4.3430558708774,11.8734453155993,0.771048469013278,1.9531789784444,0.98552587216571,2.07701771673448,1.62694529843943,1.0877350463246,6.81721999031168,0.644566922551274,2.18147451512753,2.73136752010076,4.98272776845812,0.902399225814824,0.539107359730903,1.56869953835371,0,0.527758144464379,3.4120015221269,3.2317804002538,0.215915916102139,3.08454505380579,1.35473218771926,1.50506932156456,0.764628819135115,1.66215201785745,0.671624264166535,4.60445740956463,7.05875717767231,1.02580050046556,0.984043937099117,2.60302715731442,6.80070676874967,1.55668090191184,2.14524699793529,3.44559322797703,0.650060246036521,0,0.386682873168488,0.924291702687866,0.921022048356777,0.137836572484531,0.429680979473094,0.870100163485371,0.852266274161009,1.06838442776085,1.15699440752685,0.960950336825531,2.16941611240793,1.2138933702666,0.929691098594572,7.55549632393536,3.485186350803,3.38836938193698,3.72614221221915,1.73986598415015,2.59453906745488,0.572499546967965,2.97726695487734,4.42931194606216,7.24394736910534,3.32667128704734,2.99557291623744,1.27281299170375,0,2.15846949099978,2.47083326762449,2.35624804691373,4.65019707618627,3.17020642346017,2.52755073743389,2.92580243453754,2.92456187557541,1.05650146756755,1.50149902548784,1.69686518344455,1.13008116620243,0.551365343546124,3.3171948762061,3.5076070820301,2.89387767133344,3.27947376023316,3.24656603140326,3.40805847909725,1.12678241012897,0.860468113224309,0.687743287091848,4.280052617775,1.77380532035299,1.47775344708365,1.31717957183961,2.27683904259429,2.79947776195986,0.48111056362756,2.01090682660736,0,8.19051066757979,2.15252686335615,0,1.33029046061003,1.37834040124176,15.7308758861972,15.2927441428475,14.2411796793541,5.47933083552915,7.4045209155515,11.6725196014689,8.64050299580984,18.2418790547682,0.961416640147258,1.92495971052672,0.490080431962063,0.557409525377156,0.865615277858669,0.924843963529383,0.797131363644112,0.199579371432817,2.48956981172077,2.11673582723883,0.649243880549111,1.40398589056729,0,0.313359791546046,5.01268954180134,0.846458889008016,0.963528450622197,0,1.70338495076131,3.09154810280188,0.614481528616916,0,0,0.781552381608161,0.278406173895242,0,0.540911356951966,0.33307196799782,0,0.561421621224659,10.5485889075764,0.36408156524854,2.563197838382,2.55722532125772,0.71623345421307,1.18785872333055,0.307160702099232,1.9882952955326,4.78276015795743,0.779160935160341,0.494411622680279,1.68900326502395,4.98119970627674,1.10513566212459,3.52705846995986,1.1249555075237,0.246169610922139,2.17727711363265,1.07842021376792,0,0.511572370226872,1.97286811273867,0,2.22273980289274,3.87733098438087,2.78304294485554,3.99227596002388,0.7812832832557,1.13697999995054,5.07499702804355,0.1137934482855,0,0,0.689486746482929,0,1.21537496453305,1.77148277162768,2.77371808838438,1.52581736317083,1.3269511191747,2.36438095162838,2.85201016300164,0.762569244632931,1.53366118706464,2.00070672109872,3.19037756371603,4.15015027898508,1.70539524378567,2.17294743844016,3.19001159731919,6.41183153813036,5.33034776018635,0,0.784901281975124,0.332423363800313,0.225595660617181,0.392125068635479,0.503464760927528,0.75901493089674,1.27149263184303,0.210998064528027,0.652931232636591,1.41353071433941,0,2.98578579323551,3.36138745112689,4.27721101453538,1.48260564340311,1.35920332841153,0.626531697032732,6.13350310124161,1.60515529459758,4.91955336023212,0.182454789215666,0.586993856796269,2.91336455440911,3.55125962564451,2.41981432097328,2.14250933141343,3.60163503882381,3.60776206594782,1.65901106235595,1.32930774541437,1.323967823502,0.627865836814451,0,0,1.38674673013139,1.21491816834592,0.293977192243133,0.435296032902013,2.62090002363045,2.40780445460263,3.57998425769615,2.92357268344742,3.12038736802195,2.42472541221049,2.02989091390451,2.71176888936639,0,0.19871461170299,4.7483096966909,0.391102765469606,0.64127056201227,2.77488893161158,1.59847687665704,0.576361668616424,2.97795150031381,2.74551996579143,0.720273989940749,0.621262677827163,0.471388069233591,2.03856309110421,1.04602846312333,0.917983958726896,1.73370353940911,5.4037825983881,4.92859364011175,0,2.14882720709979,0.788662062837943,2.79282401272254,2.29160424011684,0.717873024576814,2.59582700648688,3.004582336956,1.33902874465124,1.14211903227435,0.720599767084807,1.16495949527454,1.10296455230113,1.2362378757175,0.674035438541849,0.984274815147488,0.677386656526276,1.59045937961861,3.54128855890097,0.643012593860077,0.687697182986169,0.415440338029185,0.449947783103001,2.32140586367385,2.73373004961111,0.670869375198532,3.15222829196793,3.04236611182989,0.211200673038813,0.717149357331379,0.383830394638891,7.14695326373367,0,0.5085370753095,13.0319904420891,18.1486513152266,3.5924609612035,1.19730191562487,1.8881279772348,2.3854323049959,2.37955392192264,9.81899965643152,18.550964447711,3.74920573448497,5.42153667145029,0.855434189421647,0.704815022316672,6.94118181690015,1.72924735609633,11.5986935497215,12.4041505452988,0.592834895693833,0,1.91502377331055,0.544017803369474,3.0082787282724,2.14441903734423,1.63936315354902,0.314108192500469,5.31640907980192,1.70836770862748,3.755727921195,3.44045517414043,5.87923973145317,4.09836259413131,2.35192679391592,0.499921631848426,3.7912279385412,1.7127920012698,0.470531639396343,1.87333962322753,2.8984205722165,1.64180283175561,3.27198633786114,2.77402930751307,3.21985108967651,8.55330865958755,3.55924488638614,8.6959225990831,4.99062048418689,1.70980920641059,2.66139269981341,3.82312241192886,2.24901556081802,1.08684069813382,0.829412415681711,2.12673371646396,5.21745061811734,0.751288044986092,7.23529903120711,1.62748293281865,2.00033525122815,2.68526392606221,2.78420255927096,4.77715066438339,2.00013882331577,2.74716564146234,2.02049693259551,3.78554694685953,1.34833881285112,0.214441591374926,1.30497145982606,0.453411851024545,0.694567422971502,0.489473409012935,4.65630986811867,0.617602894321944,3.0699766941019,1.23682402162117,2.31496845925098,1.01365464391844,0.256241518587947,6.90860683462397,1.21543982470953,5.80685431837269,0.389720617678777,1.0629187225069,0.654261577023377,1.96565909307848,0.983091635014877,0.211312123358627,0.59996218756479,0.426766918776564,0.516644938982447,0,3.12980115428129,0.699397538597222,0,1.27894371303652,4.31299245586727,1.88719130227076,0.54604819096007,1.86705782949428,0.425149840203366,1.36329340684902,1.67593475391973,1.59002175326709,1.1829261750188,0.80057074828547,1.05802783107205,2.4499638188256,3.59683660540173,7.08482881627925,3.83121261737163,3.89721092057435,1.26035848110859,5.60173744960165,2.58361033010962,12.8492478233239,2.64998839952769,0.471878893390961,0.183428598521679,0.577628330751691,1.1441462864015,0,10.3436435500463,2.85799247727178,0.20170506870352,0,4.19050711170276,0.982631505060581,0.147856086217045,5.26793160023478,0.781078098613847,3.10030194751776,4.43910671357348,0.546974809018219,0,2.97726707033577,0.703484977438482,0.511049710558381,1.07140367175657,1.3451348888753,22.4577273567554,21.8555703697246,6.91878487268583,1.26757386311357,0.342976018874837,6.32118516684535,5.32759465859078,0.354581522651905,1.33477682270483,3.61068227112365,0.628462359664008,1.12108865325516,0.913158720509496,0,0,2.93053831124291,3.79232668158544,1.27865567904938,0.869291361512897,0,4.14432328326074,2.90221411059715,6.22133695632683,1.72090943528111,2.12997601315018,2.55640214277473,0.846774100381858,2.7492824225286,1.24082554265728,0.955538938977433,0.559277158988962,1.3741032706134,0.731507549893617,0.647428837187895,2.77189578511867,0,3.88568794447312,1.40363678077263,2.78531085225916,1.66488127088596,0.45178432815584,1.53916723443601,1.81155412280008,2.46957305945423,1.96703604453562,2.82190377816914,0.980593287015622,0.707029641304878,2.1593931382644,5.04978880556046,2.9585900930838,0.849635573439084,36.9356797660825,41.1885904151158,0.499705779624645,0.357107877211315,1.05868461514708,1.12337913364836,0.730336388246517,0.917458566809082,6.16360207551241,0.788857810965923,5.37132772508226,0.872701380680755,2.645134202577,1.11598505450025,3.23522940041993,2.16313281061895,0.883164973845552,1.20192129160065,0.760191006068622,1.93778776509765,0.534434810531121,3.40011128278926,0.250707539292375,2.72803313585662,0.803892390468535,5.80418607621146,5.68881477240424,2.34557380091079,1.66645102024618,3.22944549180031,6.02124728669822,0.560659312903067,1.20929600728513,0.404234377916439,2.61260097476354,1.71116650542641,1.14498490124799,2.15166616178029,1.99596213927608,2.84911440138411,0.853818767021724,0,0.808426818959282,2.34640942403454,1.1001729976458,0.406896178315738,5.99181096766961,12.0764276154616,0.320568492303233 | |||
|short_description=p2@MCOLN1 | |||
}} |
Revision as of 21:00, 20 January 2014
Short description: | p2@MCOLN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MCOLN1_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 43bp_to_uc002mgo.2, uc002mgp.2, uc010dvh.1_5end |
EntrezGene: | MCOLN1 |
HGNC: | 13356 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.20e-28 | 48 |
phagocyte | 1.20e-28 | 48 |
myeloid leukocyte | 2.77e-28 | 72 |
monopoietic cell | 3.01e-26 | 59 |
monocyte | 3.01e-26 | 59 |
monoblast | 3.01e-26 | 59 |
promonocyte | 3.01e-26 | 59 |
myeloid lineage restricted progenitor cell | 1.76e-25 | 66 |
macrophage dendritic cell progenitor | 5.67e-25 | 61 |
classical monocyte | 6.66e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.66e-25 | 42 |
granulocyte monocyte progenitor cell | 1.11e-22 | 67 |
myeloid cell | 1.54e-11 | 108 |
common myeloid progenitor | 1.54e-11 | 108 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.31e-23 | 108 |
hematopoietic system | 1.77e-22 | 98 |
blood island | 1.77e-22 | 98 |
immune system | 4.39e-21 | 93 |
bone marrow | 2.92e-20 | 76 |
lateral plate mesoderm | 6.06e-20 | 203 |
bone element | 5.77e-19 | 82 |
skeletal element | 2.47e-17 | 90 |
mesoderm | 1.10e-15 | 315 |
mesoderm-derived structure | 1.10e-15 | 315 |
presumptive mesoderm | 1.10e-15 | 315 |
skeletal system | 1.96e-14 | 100 |
embryonic structure | 1.01e-13 | 564 |
germ layer | 1.43e-13 | 560 |
germ layer / neural crest | 1.43e-13 | 560 |
embryonic tissue | 1.43e-13 | 560 |
presumptive structure | 1.43e-13 | 560 |
germ layer / neural crest derived structure | 1.43e-13 | 560 |
epiblast (generic) | 1.43e-13 | 560 |
developing anatomical structure | 8.46e-12 | 581 |
adult organism | 2.84e-11 | 114 |
embryo | 1.58e-10 | 592 |
musculoskeletal system | 2.79e-10 | 167 |