FFCP PHASE1:Hg19::chr20:36156229..36156250,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10904 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1055 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=13bp_to_ENST00000467603_5end | |||
|description=CAGE_peak_2_at_BLCAP_5end | |||
|id=chr20:36156229..36156250,- | |||
|ontology_enrichment_celltype=CL:0000066!6.95e-11!254;CL:0000223!5.69e-10!59;CL:0000076!6.53e-10!62;CL:0002076!1.75e-08!43;CL:0002321!1.38e-07!248;CL:0000220!2.56e-07!246;CL:0000115!6.89e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.62e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.91e-11,253;CL:0000076,3.57e-10,63;CL:0000223,1.03e-09,58;CL:0002076,3.19e-08,42;CL:0002321,2.41e-07,250;CL:0000115,6.46e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.28e-13!82;UBERON:0002616!3.95e-13!59;UBERON:0004121!5.43e-13!169;UBERON:0000924!3.06e-12!173;UBERON:0006601!3.06e-12!173;UBERON:0001049!3.22e-12!57;UBERON:0005068!3.22e-12!57;UBERON:0006241!3.22e-12!57;UBERON:0007135!3.22e-12!57;UBERON:0000955!3.99e-12!69;UBERON:0006238!3.99e-12!69;UBERON:0003080!8.66e-12!42;UBERON:0002780!1.04e-11!41;UBERON:0001890!1.04e-11!41;UBERON:0006240!1.04e-11!41;UBERON:0005743!1.48e-11!86;UBERON:0001869!1.94e-11!32;UBERON:0004111!2.39e-11!241;UBERON:0002619!2.69e-11!22;UBERON:0001893!1.72e-10!34;UBERON:0000073!1.73e-10!94;UBERON:0001016!1.73e-10!94;UBERON:0001950!2.32e-10!20;UBERON:0002020!4.26e-10!34;UBERON:0003528!4.26e-10!34;UBERON:0002791!5.52e-10!33;UBERON:0000033!1.75e-09!123;UBERON:0000153!2.83e-09!129;UBERON:0007811!2.83e-09!129;UBERON:0000956!1.30e-08!25;UBERON:0000203!1.30e-08!25;UBERON:0000475!1.44e-08!365;UBERON:0000025!3.41e-08!194;UBERON:0000119!5.14e-08!312;UBERON:0000477!1.30e-07!286;UBERON:0000483!2.00e-07!309;UBERON:0000467!2.90e-07!625;UBERON:0003056!3.03e-07!61;UBERON:0007023!3.56e-07!115;UBERON:0000480!3.82e-07!626;UBERON:0000468!4.45e-07!659;UBERON:0000064!9.62e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.59e-11;22!UBERON:0001869;1.93e-10;32!UBERON:0001950;2.31e-10;20!UBERON:0001893;2.14e-09;34!UBERON:0002791;2.42e-09;32!UBERON:0003528;2.79e-09;34!UBERON:0002020;2.79e-09;34!UBERON:0002780;6.13e-09;41!UBERON:0001890;6.13e-09;41!UBERON:0000956;9.84e-09;25!UBERON:0000203;9.84e-09;25!UBERON:0000073;8.10e-08;53!UBERON:0002616;8.10e-08;53!UBERON:0000955;8.07e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.28e-13,81;UBERON:0004121,4.74e-13,171;UBERON:0000924,4.74e-13,171;UBERON:0006601,4.74e-13,171;UBERON:0000073,1.19e-12,53;UBERON:0002616,1.19e-12,53;UBERON:0001049,4.05e-12,56;UBERON:0005068,4.05e-12,56;UBERON:0006241,4.05e-12,56;UBERON:0007135,4.05e-12,56;UBERON:0000955,5.14e-12,68;UBERON:0006238,5.14e-12,68;UBERON:0001016,8.06e-12,89;UBERON:0002780,1.04e-11,41;UBERON:0001890,1.04e-11,41;UBERON:0003080,1.04e-11,41;UBERON:0006240,1.04e-11,41;UBERON:0010371,1.11e-11,104;UBERON:0001869,1.94e-11,32;UBERON:0004111,2.61e-11,240;UBERON:0002619,2.68e-11,22;UBERON:0001893,1.72e-10,34;UBERON:0001950,2.32e-10,20;UBERON:0003528,4.25e-10,34;UBERON:0002020,4.25e-10,34;UBERON:0002791,4.42e-10,32;UBERON:0011216,4.68e-09,223;UBERON:0000956,1.30e-08,25;UBERON:0000203,1.30e-08,25;UBERON:0000025,1.93e-08,192;UBERON:0000119,3.45e-08,309;UBERON:0000483,1.37e-07,306;UBERON:0003056,5.57e-07,61;UBERON:0007023,5.81e-07,114 | |||
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| |||
|short_description=p2@BLCAP | |||
}} |
Revision as of 11:09, 21 January 2014
Short description: | p2@BLCAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BLCAP_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000467603_5end |
EntrezGene: | BLCAP |
HGNC: | 1055 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.91e-11 | 253 |
squamous epithelial cell | 3.57e-10 | 63 |
endodermal cell | 1.03e-09 | 58 |
endo-epithelial cell | 3.19e-08 | 42 |
embryonic cell | 2.41e-07 | 250 |
endothelial cell | 6.46e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.28e-13 | 81 |
ectoderm-derived structure | 4.74e-13 | 171 |
ectoderm | 4.74e-13 | 171 |
presumptive ectoderm | 4.74e-13 | 171 |
regional part of nervous system | 1.19e-12 | 53 |
regional part of brain | 1.19e-12 | 53 |
neural tube | 4.05e-12 | 56 |
neural rod | 4.05e-12 | 56 |
future spinal cord | 4.05e-12 | 56 |
neural keel | 4.05e-12 | 56 |
brain | 5.14e-12 | 68 |
future brain | 5.14e-12 | 68 |
nervous system | 8.06e-12 | 89 |
regional part of forebrain | 1.04e-11 | 41 |
forebrain | 1.04e-11 | 41 |
anterior neural tube | 1.04e-11 | 41 |
future forebrain | 1.04e-11 | 41 |
ecto-epithelium | 1.11e-11 | 104 |
cerebral hemisphere | 1.94e-11 | 32 |
anatomical conduit | 2.61e-11 | 240 |
regional part of cerebral cortex | 2.68e-11 | 22 |
telencephalon | 1.72e-10 | 34 |
neocortex | 2.32e-10 | 20 |
brain grey matter | 4.25e-10 | 34 |
gray matter | 4.25e-10 | 34 |
regional part of telencephalon | 4.42e-10 | 32 |
organ system subdivision | 4.68e-09 | 223 |
cerebral cortex | 1.30e-08 | 25 |
pallium | 1.30e-08 | 25 |
tube | 1.93e-08 | 192 |
cell layer | 3.45e-08 | 309 |
epithelium | 1.37e-07 | 306 |
pre-chordal neural plate | 5.57e-07 | 61 |
adult organism | 5.81e-07 | 114 |