FFCP PHASE1:Hg19::chr22:31003154..31003188,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6948 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11653 | |||
|TSSclassifier=strong | |||
|UniProt=P20062,Q96FD4 | |||
|association_with_transcript=0bp_to_uc003aip.1,uc003aiq.1,uc003air.1_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_1_at_TCN2_5end | |||
|id=chr22:31003154..31003188,+ | |||
|ontology_enrichment_celltype=CL:0000115!1.06e-16!35;CL:0002057!6.25e-16!42;CL:0002194!3.20e-13!63;CL:0000576!3.20e-13!63;CL:0000040!3.20e-13!63;CL:0000559!3.20e-13!63;CL:0000860!9.69e-13!45;CL:0000839!1.22e-12!70;CL:0000557!1.90e-12!71;CL:0002139!2.18e-12!24;CL:0002009!3.62e-12!65;CL:0002078!8.43e-12!44;CL:0000766!4.86e-11!76;CL:0000071!1.29e-09!18;CL:0002546!1.29e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000115;8.41e-15;36!CL:0000473;2.39e-13;39!CL:0000234;2.39e-13;39!CL:0002139;1.33e-12;24!CL:0000860;1.98e-12;33!CL:0002057;1.98e-12;33!CL:0000576;1.88e-10;48!CL:0000071;8.74e-10;18!CL:0002078;5.63e-09;45!CL:0000766;2.41e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.82e-19,48;CL:0000234,1.82e-19,48;CL:0000115,2.37e-17,36;CL:0002194,4.01e-16,59;CL:0000576,4.01e-16,59;CL:0000040,4.01e-16,59;CL:0000559,4.01e-16,59;CL:0000860,4.16e-16,42;CL:0002057,4.16e-16,42;CL:0000839,3.39e-15,66;CL:0000557,6.87e-15,67;CL:0002009,1.04e-14,61;CL:0000766,9.87e-14,72;CL:0002078,1.55e-12,45;CL:0002139,1.60e-12,24;CL:0000071,1.03e-09,18;CL:0002546,1.03e-09,18 | |||
|ontology_enrichment_development_v019=CL:0002057;8.23e-12;42!CL:0002546;8.74e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.33e-25!659;UBERON:0000480!1.99e-22!626;UBERON:0000467!2.19e-22!625;UBERON:0000922!1.95e-21!612;UBERON:0003081!3.81e-19!216;UBERON:0002050!1.73e-18!605;UBERON:0005423!1.73e-18!605;UBERON:0000923!2.96e-18!604;UBERON:0005291!2.96e-18!604;UBERON:0006598!2.96e-18!604;UBERON:0002532!2.96e-18!604;UBERON:0000062!4.43e-16!511;UBERON:0002405!5.88e-15!115;UBERON:0002371!2.51e-13!80;UBERON:0000926!2.55e-12!448;UBERON:0004120!2.55e-12!448;UBERON:0006603!2.55e-12!448;UBERON:0002193!4.31e-12!112;UBERON:0001474!1.48e-11!86;UBERON:0002049!1.14e-09!79;UBERON:0007798!1.14e-09!79;UBERON:0001986!1.29e-09!18;UBERON:0004638!1.29e-09!18;UBERON:0004852!1.29e-09!18;UBERON:0004765!1.35e-09!101;UBERON:0001434!1.35e-09!101;UBERON:0001009!2.85e-09!113;UBERON:0002390!4.12e-09!102;UBERON:0003061!4.12e-09!102;UBERON:0007023!8.34e-09!115;UBERON:0004535!1.27e-08!110;UBERON:0002204!1.43e-08!167;UBERON:0004111!9.96e-08!241;UBERON:0000477!1.24e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.74e-10;18!UBERON:0001986;8.74e-10;18!UBERON:0004852;8.74e-10;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.20e-23,315;UBERON:0004120,2.20e-23,315;UBERON:0006603,2.20e-23,315;UBERON:0000922,1.94e-21,592;UBERON:0003081,2.20e-21,203;UBERON:0000923,3.59e-21,560;UBERON:0010316,3.59e-21,560;UBERON:0005291,3.59e-21,560;UBERON:0006598,3.59e-21,560;UBERON:0010317,3.59e-21,560;UBERON:0002532,3.59e-21,560;UBERON:0002050,2.36e-20,564;UBERON:0005423,6.53e-20,581;UBERON:0002405,6.94e-18,93;UBERON:0002371,1.06e-15,76;UBERON:0002193,6.13e-14,108;UBERON:0004765,6.52e-14,90;UBERON:0001474,8.99e-14,82;UBERON:0001434,2.72e-12,100;UBERON:0002204,9.54e-11,167;UBERON:0002390,1.04e-10,98;UBERON:0003061,1.04e-10,98;UBERON:0002049,6.59e-10,78;UBERON:0007798,6.59e-10,78;UBERON:0004638,1.03e-09,18;UBERON:0001986,1.03e-09,18;UBERON:0004852,1.03e-09,18;UBERON:0001009,2.05e-09,112;UBERON:0007023,3.48e-09,114;UBERON:0004535,9.36e-09,109;UBERON:0000479,1.33e-07,773;UBERON:0004111,6.11e-07,240 | |||
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| |||
|short_description=p1@TCN2 | |||
}} |
Revision as of 15:19, 21 January 2014
Short description: | p1@TCN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TCN2_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 0bp_to_uc003aip.1, uc003aiq.1, uc003air.1_5end |
EntrezGene: | TCN2 |
HGNC: | 11653 |
UniProt: | P20062Q96FD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.82e-19 | 48 |
phagocyte | 1.82e-19 | 48 |
endothelial cell | 2.37e-17 | 36 |
monopoietic cell | 4.01e-16 | 59 |
monocyte | 4.01e-16 | 59 |
monoblast | 4.01e-16 | 59 |
promonocyte | 4.01e-16 | 59 |
classical monocyte | 4.16e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.16e-16 | 42 |
myeloid lineage restricted progenitor cell | 3.39e-15 | 66 |
granulocyte monocyte progenitor cell | 6.87e-15 | 67 |
macrophage dendritic cell progenitor | 1.04e-14 | 61 |
myeloid leukocyte | 9.87e-14 | 72 |
meso-epithelial cell | 1.55e-12 | 45 |
endothelial cell of vascular tree | 1.60e-12 | 24 |
blood vessel endothelial cell | 1.03e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.03e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.20e-23 | 315 |
mesoderm-derived structure | 2.20e-23 | 315 |
presumptive mesoderm | 2.20e-23 | 315 |
embryo | 1.94e-21 | 592 |
lateral plate mesoderm | 2.20e-21 | 203 |
germ layer | 3.59e-21 | 560 |
germ layer / neural crest | 3.59e-21 | 560 |
embryonic tissue | 3.59e-21 | 560 |
presumptive structure | 3.59e-21 | 560 |
germ layer / neural crest derived structure | 3.59e-21 | 560 |
epiblast (generic) | 3.59e-21 | 560 |
embryonic structure | 2.36e-20 | 564 |
developing anatomical structure | 6.53e-20 | 581 |
immune system | 6.94e-18 | 93 |
bone marrow | 1.06e-15 | 76 |
hemolymphoid system | 6.13e-14 | 108 |
skeletal element | 6.52e-14 | 90 |
bone element | 8.99e-14 | 82 |
skeletal system | 2.72e-12 | 100 |
musculoskeletal system | 9.54e-11 | 167 |
hematopoietic system | 1.04e-10 | 98 |
blood island | 1.04e-10 | 98 |
vasculature | 6.59e-10 | 78 |
vascular system | 6.59e-10 | 78 |
blood vessel endothelium | 1.03e-09 | 18 |
endothelium | 1.03e-09 | 18 |
cardiovascular system endothelium | 1.03e-09 | 18 |
circulatory system | 2.05e-09 | 112 |
adult organism | 3.48e-09 | 114 |
cardiovascular system | 9.36e-09 | 109 |
tissue | 1.33e-07 | 773 |
anatomical conduit | 6.11e-07 | 240 |