FFCP PHASE1:Hg19::chr4:90758118..90758150,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6622 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11138 | |||
|TSSclassifier=strong | |||
|UniProt=P37840 | |||
|association_with_transcript=0bp_to_ENST00000420646,NM_001146054,NM_007308,uc003hso.2,uc003hsq.2_5end | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_3_at_SNCA_5end | |||
|id=chr4:90758118..90758150,- | |||
|ontology_enrichment_celltype=CL:0000147!1.37e-08!14;CL:0002139!1.78e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000147;9.81e-11;14!CL:0002139;1.90e-08;24!CL:0002077;6.05e-08;34!CL:0000148;6.73e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.69e-10,14;CL:0002139,1.30e-08,24;CL:0002077,1.66e-08,34;CL:0000066,3.40e-08,253;CL:0000148,1.19e-07,10;CL:0000541,1.19e-07,10;CL:0002321,3.28e-07,250 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.48e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.88e-27!123;UBERON:0004121!3.06e-27!169;UBERON:0005743!1.11e-26!86;UBERON:0000073!2.87e-26!94;UBERON:0001016!2.87e-26!94;UBERON:0000153!3.43e-26!129;UBERON:0007811!3.43e-26!129;UBERON:0000924!4.03e-26!173;UBERON:0006601!4.03e-26!173;UBERON:0003075!1.57e-25!86;UBERON:0007284!1.57e-25!86;UBERON:0001049!7.96e-25!57;UBERON:0005068!7.96e-25!57;UBERON:0006241!7.96e-25!57;UBERON:0007135!7.96e-25!57;UBERON:0001017!2.10e-24!82;UBERON:0007023!7.43e-24!115;UBERON:0002346!9.48e-24!90;UBERON:0002616!1.06e-22!59;UBERON:0003056!5.99e-22!61;UBERON:0000955!1.65e-21!69;UBERON:0006238!1.65e-21!69;UBERON:0002780!1.90e-20!41;UBERON:0001890!1.90e-20!41;UBERON:0006240!1.90e-20!41;UBERON:0003080!1.90e-19!42;UBERON:0001893!7.56e-18!34;UBERON:0002020!7.89e-18!34;UBERON:0003528!7.89e-18!34;UBERON:0002791!2.49e-17!33;UBERON:0001869!1.48e-16!32;UBERON:0004111!1.57e-16!241;UBERON:0000483!1.87e-16!309;UBERON:0000119!3.19e-16!312;UBERON:0000477!8.54e-15!286;UBERON:0000922!8.94e-15!612;UBERON:0002619!3.49e-14!22;UBERON:0002050!8.81e-14!605;UBERON:0005423!8.81e-14!605;UBERON:0000923!1.07e-13!604;UBERON:0005291!1.07e-13!604;UBERON:0006598!1.07e-13!604;UBERON:0002532!1.07e-13!604;UBERON:0000956!2.25e-13!25;UBERON:0000203!2.25e-13!25;UBERON:0000025!3.41e-13!194;UBERON:0001950!5.75e-13!20;UBERON:0000468!2.49e-11!659;UBERON:0000481!1.22e-10!347;UBERON:0000467!1.86e-10!625;UBERON:0000480!2.79e-10!626;UBERON:0000475!3.85e-10!365;UBERON:0000064!1.58e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.41e-17;22!UBERON:0002780;2.08e-17;41!UBERON:0001890;2.08e-17;41!UBERON:0003528;5.32e-17;34!UBERON:0002020;5.32e-17;34!UBERON:0001893;6.18e-17;34!UBERON:0002791;8.67e-17;32!UBERON:0001869;1.05e-16;32!UBERON:0001950;4.85e-16;20!UBERON:0000073;1.80e-15;53!UBERON:0002616;1.80e-15;53!UBERON:0000956;2.03e-14;25!UBERON:0000203;2.03e-14;25!UBERON:0000955;7.86e-11;68!UBERON:0001017;1.19e-10;75!UBERON:0001016;2.48e-10;83!UBERON:0002420;3.19e-07;9!UBERON:0007245;3.19e-07;9!UBERON:0010009;3.19e-07;9!UBERON:0010011;3.19e-07;9!UBERON:0000454;3.19e-07;9!UBERON:0000125;3.69e-07;9!UBERON:0002308;3.69e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.15e-31,104;UBERON:0003075,1.07e-28,82;UBERON:0007284,1.07e-28,82;UBERON:0001049,2.26e-28,56;UBERON:0005068,2.26e-28,56;UBERON:0006241,2.26e-28,56;UBERON:0007135,2.26e-28,56;UBERON:0002346,3.56e-27,86;UBERON:0003056,9.52e-27,61;UBERON:0000073,3.17e-26,53;UBERON:0002616,3.17e-26,53;UBERON:0004121,4.14e-26,171;UBERON:0000924,4.14e-26,171;UBERON:0006601,4.14e-26,171;UBERON:0001017,1.05e-25,81;UBERON:0001016,5.57e-25,89;UBERON:0002780,2.04e-23,41;UBERON:0001890,2.04e-23,41;UBERON:0003080,2.04e-23,41;UBERON:0006240,2.04e-23,41;UBERON:0000955,3.11e-23,68;UBERON:0006238,3.11e-23,68;UBERON:0001893,4.37e-20,34;UBERON:0003528,4.60e-20,34;UBERON:0002020,4.60e-20,34;UBERON:0011216,6.26e-19,223;UBERON:0002791,1.22e-18,32;UBERON:0007023,1.38e-18,114;UBERON:0001869,1.78e-18,32;UBERON:0002619,1.31e-17,22;UBERON:0010314,3.64e-17,132;UBERON:0001950,4.62e-16,20;UBERON:0000483,3.22e-15,306;UBERON:0000119,1.14e-14,309;UBERON:0004111,1.59e-14,240;UBERON:0000956,1.90e-14,25;UBERON:0000203,1.90e-14,25;UBERON:0000922,9.17e-14,592;UBERON:0002050,1.20e-13,564;UBERON:0005423,2.03e-13,581;UBERON:0000923,7.23e-13,560;UBERON:0010316,7.23e-13,560;UBERON:0005291,7.23e-13,560;UBERON:0006598,7.23e-13,560;UBERON:0010317,7.23e-13,560;UBERON:0002532,7.23e-13,560;UBERON:0000025,6.92e-12,192;UBERON:0002420,3.28e-07,9;UBERON:0007245,3.28e-07,9;UBERON:0010009,3.28e-07,9;UBERON:0010011,3.28e-07,9;UBERON:0000454,3.28e-07,9;UBERON:0000125,3.98e-07,9;UBERON:0002308,3.98e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,0,0,0,10.0250745897638,7.95353701746998,2.01697543935533,0.602694528023977,0.730310090387373,0.975865597581014,0.123121058076788,0.408001382488506,0.626909442956176,0.286235987131057,0.410623275218653,0.753255837568817,0,0,0,0,0,0,5.51652734687356,3.31326510656075,3.32778609150109,0,0,0.293600439334847,0,0.200544447470142,0,1.34349284543955,1.6194683300949,1.54545340580512,0,0,0,0.464858073811369,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0.449446968890169,0,0.641858054152187,0.639337125799041,0,0,0.426224750532694,0,0.56738522469114,0,0.251248665256743,0,0,1.21079900526674,0.368277635987565,0,0.211255286311942,0,0,0,0.300353785683013,0.32145117339416,0,0,0,0,0.546138611262131,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,4.15953195521899,3.32594096193846,4.12823492757692,1.76821751921912,1.82147644146271,1.11235332835329,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0.371457501329565,1.78886166630035,3.4409383804245,0,7.91431118693613,2.09749718104953,0.825354125820202,2.50793959844173,3.35941786920128,3.20189636418039,2.00832367658802,4.83395180530976,9.12326526862215,2.68468263302986,4.04429388380456,3.24056779152704,1.42879565254528,2.46982309888787,1.91439516821648,1.53316637465883,1.89853131913626,1.64881569537367,0,0,3.92484646928281,0,0,0,0,0,1.12135520028461,0,3.45334567784024,0,4.98429486657846,0.490385709340376,0.908144565869588,0.576175924479999,0.937285727335186,0.312160076830321,0.570471821544449,3.43731965269142,0,0,0,4.08308342509786,0.982674538494144,2.78979609174567,0,0,0,0,0.168336113954066,0.250237039743928,3.60183350129438,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,2.45471508531751,4.01526433544605,0,0.397589304964456,1.04574548582567,1.55491582523056,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,1.18157981336281,0,0,4.46076306776166,7.02401826615204,5.62008766288098,3.01586917234893,6.94413338688972,3.58389135841357,0,2.88662684050547,7.30361551342984,2.34817388471643,3.89789408954899,10.648666789262,6.08813287150714,0,0,3.44703808522356,0.702012795417713,2.82399208348584,1.87467667973554,7.39121364074982,2.26840155587818,11.9112835194788,9.88155390947471,3.4504441124869,0,0,0,0,0,30.1614997887803,19.4814097034722,23.4434894420094,10.2643467613623,17.8919837303783,46.2528309079633,42.5881384619561,0.112131084345361,0.43596006883328,0,2.19761916788222,0,0,0.531876233169741,0,0.257207374262142,0,0,0.285955987316295,0,0.823240336780769,0.325736184293735,1.06617584622764,0.791951872933429,0.904318131178758,2.61460037580088,1.29964888536674,4.86495122564762,4.01805673145701,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.254094624222463,6.50699269288109,4.63973287666617,4.35542289869307,3.82763250991898,0,0,0.414415513436035,7.85225547002495,0,1.08506009479894,0,0,0,0,0,0,2.0694614258501,0,0,2.17209036170207,3.13281851940385,0.686286847621712,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8298817478938,1.65745780084613,6.31479464905337,0.182091168006717,6.29397191805236,0,0.847168708148562,1.56869953835371,1.46139224653261,0.949964660035881,0,1.53084334748864,0.863663664408557,0,1.35473218771926,2.50844886927427,0,0,0,17.3215302550288,17.7776106696932,10.7709052548883,8.20036614249264,10.4121086292577,0.309123034943167,0,0.082509499920588,2.87132768998086,7.15066270640173,0,0,0,0,0,0,0.145016693914229,0,0.0890320356467374,3.47098322258054,4.22818148203234,4.21121951232128,1.71968227454435,0,0.31481234683064,0,0,0,1.73986598415015,1.8532421910392,0.429374660225974,1.48863347743867,0.316379424718726,0.38126038784765,0.511795582622668,1.28381696410176,0,0,3.23770423649967,6.86342574340137,2.70968525395079,0,1.58510321173008,0.421258456238981,0.48763373908959,0,0,0,24.1803288640849,0,0,1.99031692572366,2.63070531152258,0,1.9676842561399,2.84074527747786,2.78841148289775,1.69017361519345,1.57752487424457,0.0982490410131212,3.92338156629375,3.19284957663538,0,0,0.379473173765715,0.349934720244983,9.23732282164916,3.35151137767894,7.62236894029258,0.659006605437454,2.15252686335615,3.36942951335251,2.66058092122005,4.36474460393223,171.517291920473,200.334948271302,133.867088985928,56.6991625589538,49.3634727703433,152.391228130289,195.491380280198,150.693783495911,16.023610669121,1.92495971052672,1.22520107990516,0,0,0,0,0,0,6.1385338989926,0.649243880549111,0.280797178113459,0,0,0,1.18504244461122,0,0,0,0,0,0,0,0,2.22724939116194,4.92349595790849,0.540911356951966,0.99921590399346,0,0,0.439524537815682,0,0,3.12549761487054,0,0,0.307160702099232,7.95318118213038,9.42485089950435,1.66963057534359,0,0,0.796991953004279,0.276283915531148,0.755798243562828,0,0,0,0,0,0,0.986434056369336,55.0811112397962,0,7.75466196876175,11.4104760739077,19.9613798001194,0,0,0,10.5827906905515,0,0,1.03423011972439,0.291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| |||
|short_description=p3@SNCA | |||
}} |
Revision as of 02:16, 22 January 2014
Short description: | p3@SNCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SNCA_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000420646, NM_001146054, NM_007308, uc003hso.2, uc003hsq.2_5end |
EntrezGene: | SNCA |
HGNC: | 11138 |
UniProt: | P37840 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.69e-10 | 14 |
endothelial cell of vascular tree | 1.30e-08 | 24 |
ecto-epithelial cell | 1.66e-08 | 34 |
epithelial cell | 3.40e-08 | 253 |
melanocyte | 1.19e-07 | 10 |
melanoblast | 1.19e-07 | 10 |
embryonic cell | 3.28e-07 | 250 |