FFCP PHASE1:Hg19::chr5:130970848..130970965,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51735 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20655 | |||
|TSSclassifier=strong | |||
|UniProt=E7EWD4,A3KN82,E9PDV7,B7Z7Y1,B2RTU6,B7ZML2,Q8TEU7,A5PLL6 | |||
|association_with_transcript=0bp_to_ENST00000307984,ENST00000358714,ENST00000507093,ENST00000509018,ENST00000510071,ENST00000515170,NM_001164386,NM_001164387,NM_001164388,NM_001164389,NM_001164390,NM_016340,uc003kvn.1,uc003kvo.1,uc003kvr.2,uc010jdi.1,uc010jdj.1,uc010jdk.2,uc011cxe.1_5end | |||
|coexpression_cluster_id=C176 | |||
|description=CAGE_peak_1_at_RAPGEF6_5end | |||
|id=chr5:130970848..130970965,- | |||
|ontology_enrichment_celltype=CL:0000037!2.54e-43!172;CL:0000566!2.54e-43!172;CL:0002032!2.22e-40!165;CL:0000837!2.22e-40!165;CL:0000988!5.23e-39!182;CL:0000738!1.70e-38!140;CL:0002031!2.08e-31!124;CL:0002087!2.98e-29!119;CL:0000763!2.94e-20!112;CL:0000049!2.94e-20!112;CL:0000542!1.91e-19!53;CL:0000051!1.91e-19!53;CL:0000838!4.44e-19!52;CL:0000766!3.81e-14!76;CL:0000557!1.17e-12!71;CL:0000839!4.43e-12!70;CL:0002009!1.02e-10!65;CL:0002057!1.65e-10!42;CL:0000945!3.62e-10!24;CL:0000826!3.62e-10!24;CL:0002194!7.71e-10!63;CL:0000576!7.71e-10!63;CL:0000040!7.71e-10!63;CL:0000559!7.71e-10!63;CL:0000860!9.05e-10!45;CL:0000791!1.66e-09!18;CL:0000789!1.66e-09!18;CL:0002420!1.66e-09!18;CL:0002419!1.66e-09!18;CL:0000790!1.66e-09!18;CL:0000236!4.17e-09!14;CL:0000084!8.74e-09!25;CL:0000827!8.74e-09!25;CL:0000625!5.45e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;8.00e-12;53!CL:0000945;3.83e-10;24!CL:0002087;6.84e-10;104!CL:0000791;1.63e-09;18!CL:0000789;1.63e-09;18!CL:0002419;1.63e-09;18!CL:0000236;8.36e-09;13!CL:0000084;8.85e-09;25!CL:0000738;1.18e-08;136!CL:0000576;7.29e-08;48!CL:0000988;1.91e-07;177!CL:0000860;3.02e-07;33!CL:0002057;3.02e-07;33!CL:0000766;3.45e-07;69!CL:0000625;5.62e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.02e-44,168;CL:0002032,9.38e-42,161;CL:0000837,9.38e-42,161;CL:0000988,4.23e-41,177;CL:0000738,4.93e-40,136;CL:0002031,7.35e-33,120;CL:0002087,1.13e-30,115;CL:0000763,2.30e-21,108;CL:0000049,2.30e-21,108;CL:0000542,1.91e-19,53;CL:0000051,1.91e-19,53;CL:0000838,4.44e-19,52;CL:0000766,2.77e-15,72;CL:0000557,9.36e-14,67;CL:0000839,3.81e-13,66;CL:0002009,9.72e-12,61;CL:0002194,8.20e-11,59;CL:0000576,8.20e-11,59;CL:0000040,8.20e-11,59;CL:0000559,8.20e-11,59;CL:0000860,1.65e-10,42;CL:0002057,1.65e-10,42;CL:0000945,3.62e-10,24;CL:0000826,3.62e-10,24;CL:0000791,1.66e-09,18;CL:0000789,1.66e-09,18;CL:0002420,1.66e-09,18;CL:0002419,1.66e-09,18;CL:0000790,1.66e-09,18;CL:0000473,2.61e-09,48;CL:0000234,2.61e-09,48;CL:0000236,4.17e-09,14;CL:0000084,8.74e-09,25;CL:0000827,8.74e-09,25;CL:0000625,5.45e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;8.00e-12;53!CL:0000790;1.63e-09;18!CL:0002057;9.43e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.83e-21!115;UBERON:0002390!1.09e-16!102;UBERON:0003061!1.09e-16!102;UBERON:0002193!2.33e-14!112;UBERON:0001049!2.07e-12!57;UBERON:0005068!2.07e-12!57;UBERON:0006241!2.07e-12!57;UBERON:0007135!2.07e-12!57;UBERON:0003080!1.13e-10!42;UBERON:0002780!1.40e-10!41;UBERON:0001890!1.40e-10!41;UBERON:0006240!1.40e-10!41;UBERON:0002616!2.85e-09!59;UBERON:0002371!6.35e-09!80;UBERON:0000955!8.48e-09!69;UBERON:0006238!8.48e-09!69;UBERON:0001474!1.33e-08!86;UBERON:0000178!2.07e-08!15;UBERON:0000179!2.07e-08!15;UBERON:0000463!2.07e-08!15;UBERON:0001893!2.91e-08!34;UBERON:0001017!2.95e-08!82;UBERON:0002020!4.13e-08!34;UBERON:0003528!4.13e-08!34;UBERON:0002791!5.94e-08!33;UBERON:0000073!1.40e-07!94;UBERON:0001016!1.40e-07!94;UBERON:0001869!2.19e-07!32;UBERON:0005743!2.66e-07!86;UBERON:0002405!6.81e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.86e-08;15!UBERON:0000179;1.86e-08;15!UBERON:0000463;1.86e-08;15!UBERON:0002780;4.89e-08;41!UBERON:0001890;4.89e-08;41!UBERON:0000073;3.84e-07;53!UBERON:0002616;3.84e-07;53!UBERON:0007023;4.35e-07;114!UBERON:0001893;4.74e-07;34!UBERON:0003528;5.54e-07;34!UBERON:0002020;5.54e-07;34!UBERON:0002791;7.91e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.25e-20,114;UBERON:0002390,1.04e-17,98;UBERON:0003061,1.04e-17,98;UBERON:0002193,3.41e-15,108;UBERON:0001049,2.64e-12,56;UBERON:0005068,2.64e-12,56;UBERON:0006241,2.64e-12,56;UBERON:0007135,2.64e-12,56;UBERON:0000073,2.25e-11,53;UBERON:0002616,2.25e-11,53;UBERON:0002780,1.40e-10,41;UBERON:0001890,1.40e-10,41;UBERON:0003080,1.40e-10,41;UBERON:0006240,1.40e-10,41;UBERON:0002405,9.33e-10,93;UBERON:0002371,1.17e-09,76;UBERON:0001474,2.83e-09,82;UBERON:0000955,1.10e-08,68;UBERON:0006238,1.10e-08,68;UBERON:0000178,2.07e-08,15;UBERON:0000179,2.07e-08,15;UBERON:0000463,2.07e-08,15;UBERON:0001016,2.18e-08,89;UBERON:0001893,2.91e-08,34;UBERON:0001017,3.83e-08,81;UBERON:0003528,4.13e-08,34;UBERON:0002020,4.13e-08,34;UBERON:0002791,1.65e-07,32;UBERON:0001869,2.19e-07,32 | |||
|phase1_expression=7.99384868790449,5.99481466894753,9.44394507443007,5.00366491765652,7.15137751083661,13.9574163856059,2.53299878168311,2.52687949370732,3.65659879479774,5.89761447603621,9.07141518364156,4.15038607047327,2.37390280405608,4.33182235360163,3.97676850873499,7.39557661096953,4.82155622419182,8.03341099426111,2.92759679274304,5.90981078768582,5.50801866359483,2.82109249330279,14.0255633694218,18.6149218099122,18.5803106600308,25.9805579543034,23.8091709404843,26.997797990592,20.454942396143,32.2416694401659,20.1260960310899,8.27479102031034,5.4217065380085,7.76483421350254,45.5507139412174,51.0387544629843,30.5344456908241,69.2494260664847,55.7513563966994,57.9419024811324,27.3176878572708,28.5026426096702,27.3030101692238,20.0649569515799,26.8291920019055,23.773237996406,23.7077617643798,41.5279566902044,37.4744708783075,20.7138522471948,28.9461598377884,29.7967609659617,25.8559260552464,29.692295444856,27.0852973188684,17.130052898377,28.6551457560738,37.5288219023291,21.1197885735923,36.2649800595986,32.6061934157511,17.482118909896,25.3318845179472,18.7538890234385,21.7656928971438,34.0431134814684,35.5008681927478,28.1398505087552,23.9882142473293,38.0080478233954,15.7403870684676,43.8250386825202,39.2413360426697,29.7869953699838,24.8747030959101,23.0624510059213,31.3396880898721,24.1784797474825,29.5735079522627,27.3612233991599,26.455918067479,29.4089287561061,66.8785728953026,59.5291086275723,59.5971200088582,62.7293427172766,45.2447465350694,67.820787914629,50.2394103316495,65.8297090629401,77.9821767679944,64.5960908308033,72.2496401156683,38.3296852879175,45.961702164486,21.8608790363314,49.3741522985721,31.4408610199332,46.8771417718881,35.7779100136051,56.0586298609775,54.4464976594943,54.5514839542152,26.8499201093268,36.8257384343546,27.9132707175363,38.9957563821622,26.2587205437634,27.1824036400146,28.6121954010396,29.5694519030858,36.8049918883517,58.4249058858518,63.407176257262,56.4491828546875,38.1852484890798,39.088490347396,40.5480385669503,48.5797808677445,39.1835459618639,50.7845094008006,40.8694379112801,48.7863385811984,55.2902160187087,46.224368824368,40.2521328474829,39.4141438522102,48.5872251171605,35.83698623499,43.1576723570741,19.5045493051169,6.70700859703636,5.62595272111533,5.78302643815306,5.51471701699479,4.92478164466801,7.95285947051099,7.78615792484217,21.4594034962434,13.3037638477538,13.7900613538208,23.0523172875974,4.73583874780305,5.19098219898201,24.0165071304466,31.8657419257659,18.2152405910845,24.0875530548395,27.4557557174461,29.7166001063652,12.5220316641024,10.3228151412735,5.55424802572151,10.7408508965562,5.45349267072878,7.42818713238182,6.26984899610432,17.313922864345,14.9421830328418,19.0790749275862,5.63961043952806,6.0821768457481,4.63717909341522,8.08858776760911,4.0507097394088,16.6990491891229,17.2887616922151,20.3826779674813,9.19899824795299,12.3404535743857,8.97688545258996,114.648963169375,135.723092451914,3.92484646928281,5.96366342034382,11.143485026483,23.0391974615001,29.257335316379,10.2853830837524,8.97084160227691,4.2699598291882,4.9333509683432,19.6062952301853,11.4504071259235,13.0769522490767,5.90293967815232,8.64263886719998,5.62371436401112,5.30672130611545,9.12754914471119,7.17353666648645,16.6756988074146,18.2916427135989,16.5731951908653,16.7406420429012,16.7054671544004,12.6057453034434,7.12801714369232,9.89067717114228,3.64064544775211,0,18.0119641930851,18.1421853814348,22.1651292387346,7.46261955497424,6.12975591598039,8.86404547548921,6.91936317276128,32.8283033310617,18.1523780495782,18.4380754008819,31.5095650888622,23.8051342540794,22.1570864439241,12.2837125178849,31.7299504613581,8.86676746966907,35.0882946199319,24.0250235456401,10.8302858068604,21.3005755509969,9.36994513517054,8.13890843090341,8.69673839234836,12.8190676677692,13.1930113878942,16.1005292091066,14.1806852103989,12.8975276585165,15.8601414173517,12.3637216929058,22.2636189036256,10.9514672630871,7.07565032012174,5.52539685409922,7.89425477654364,2.88751792667834,6.98010120235079,6.74338760312407,9.3994301654558,7.279402200338,10.2403338723431,8.06720104977729,7.9550471814497,8.82996593064057,6.15595451114225,6.64339909162183,1.40241773803446,4.5273141246454,2.94017422771084,21.5483559197112,14.7424082501644,19.4960669204863,29.5780276607816,16.234473887691,6.6911446016425,6.91426798074341,7.86812272803337,11.3597738825143,11.2957903093406,7.49359102213747,1.03993478527958,0,10.7815276626821,12.0930955062896,7.50705528357584,8.33373922637899,8.75169100279152,21.3355187449004,14.5942647556128,25.1141346209145,20.5923753322529,17.5384771500699,5.62403003920662,8.23112428174412,10.633132293179,9.04541079298768,7.84711633987697,6.13412286664338,152.725603747742,27.1189176760736,30.4772329844935,26.8063113355548,28.1520626540827,15.8109756787501,12.9876064689814,9.37739577680376,10.2643467613623,11.3110241973656,11.1126931402249,8.86061941154792,6.2793407233402,3.05172048183296,9.02060915597685,14.3491604491133,7.15312891703765,4.22651376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| |||
|short_description=p1@RAPGEF6 | |||
}} |
Revision as of 07:16, 22 January 2014
Short description: | p1@RAPGEF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAPGEF6_5end |
Coexpression cluster: | C176_Eosinophils_Neutrophils_Mast_CD14_CD4_Basophils_CD19 |
Association with transcript: | 0bp_to_ENST00000307984, ENST00000358714, ENST00000507093, ENST00000509018, ENST00000510071, ENST00000515170, NM_001164386, NM_001164387, NM_001164388, NM_001164389, NM_001164390, NM_016340, uc003kvn.1, uc003kvo.1, uc003kvr.2, uc010jdi.1, uc010jdj.1, uc010jdk.2, uc011cxe.1_5end |
EntrezGene: | RAPGEF6 |
HGNC: | 20655 |
UniProt: | E7EWD4A3KN82E9PDV7B7Z7Y1B2RTU6B7ZML2Q8TEU7A5PLL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.25e-20 | 114 |
hematopoietic system | 1.04e-17 | 98 |
blood island | 1.04e-17 | 98 |
hemolymphoid system | 3.41e-15 | 108 |
neural tube | 2.64e-12 | 56 |
neural rod | 2.64e-12 | 56 |
future spinal cord | 2.64e-12 | 56 |
neural keel | 2.64e-12 | 56 |
regional part of nervous system | 2.25e-11 | 53 |
regional part of brain | 2.25e-11 | 53 |
regional part of forebrain | 1.40e-10 | 41 |
forebrain | 1.40e-10 | 41 |
anterior neural tube | 1.40e-10 | 41 |
future forebrain | 1.40e-10 | 41 |
immune system | 9.33e-10 | 93 |
bone marrow | 1.17e-09 | 76 |
bone element | 2.83e-09 | 82 |
brain | 1.10e-08 | 68 |
future brain | 1.10e-08 | 68 |
blood | 2.07e-08 | 15 |
haemolymphatic fluid | 2.07e-08 | 15 |
organism substance | 2.07e-08 | 15 |
nervous system | 2.18e-08 | 89 |
telencephalon | 2.91e-08 | 34 |
central nervous system | 3.83e-08 | 81 |
brain grey matter | 4.13e-08 | 34 |
gray matter | 4.13e-08 | 34 |
regional part of telencephalon | 1.65e-07 | 32 |
cerebral hemisphere | 2.19e-07 | 32 |