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{{UBERON
{{UBERON
|id=UBERON:0009618
|alt_id=
|name=trunk paraxial mesoderm
|namespace=
|def=
|xref=EHDAA2:0002094
|is_a=UBERON:0004120;;UBERON:0005256;;UBERON:0005291
|synonym="trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094];;"trunk paraxial mesenchyme" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009618
|is_a=UBERON:0004120 ;;UBERON:0005256
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=trunk paraxial mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003077;;UBERON:0005256
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094];;"trunk paraxial mesenchyme" RELATED []
|union_of=
|xref=EHDAA2:0002094
}}
}}

Latest revision as of 18:06, 12 September 2014

Name:trunk paraxial mesoderm
Namespace:FANTOM
Xrefs:
links:
EHDAA2:0002094
Synonyms: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094]
"trunk paraxial mesenchyme" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005256(trunk mesenchyme)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0003077(paraxial mesoderm),UBERON:0005256(trunk mesenchyme)



Children

develops from:UBERON:0007282 (presumptive segmental plate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009618 (trunk paraxial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_ae768119794d65ea39f7ebf4a2fec174p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_ae768119794d65ea39f7ebf4a2fec174p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_eeec2ade2e71bf87828d1b66691dd526p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_eeec2ade2e71bf87828d1b66691dd526p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_eeec2ade2e71bf87828d1b66691dd526p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_eeec2ade2e71bf87828d1b66691dd526p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_0113af01c75bb7ec6216171e7f267502p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_0113af01c75bb7ec6216171e7f267502p@chrX:160838787..160838800, +
1.58e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_3fe275c562b66674b374329b59c373f6p8@ARHGAP22
1.58e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_3fe275c562b66674b374329b59c373f6p8@ARHGAP22
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_7063389f82a654650455090e6252f9c6p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_7063389f82a654650455090e6252f9c6p@chr11:81849982..81850000, +
9.2e-41FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_9e0081277ed0a076993cdba432fe41fdp@chr6:53359400..53359406, +
9.2e-41FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_9e0081277ed0a076993cdba432fe41fdp@chr6:53359400..53359406, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_437b799f4ffdc9391163fea9d439abfap@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_437b799f4ffdc9391163fea9d439abfap@chr17:14813242..14813246, -
2.26e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_6d16aef662ab4d338014a240f2f29b43p4@ARHGAP22
2.26e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_6d16aef662ab4d338014a240f2f29b43p4@ARHGAP22
2.88e-39FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_e6f8d89e9f0781739a07eab0a3dd9353p@chr9:35685631..35685657, +
2.88e-39FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_e6f8d89e9f0781739a07eab0a3dd9353p@chr9:35685631..35685657, +
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_cfa6f451982ada2492634b702baa2c43p4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_cfa6f451982ada2492634b702baa2c43p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_a5aa65a78cb01f5224d65443a6c55ab7p@chrX:160840048..160840057, +
1.14e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_2b10ddf171e2229f42cb66e8e991492cp2@SASH1
1.14e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_2b10ddf171e2229f42cb66e8e991492cp2@SASH1
1.34e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_19be24bbfb37db5a40c37a92d3430651p3@ARHGAP22
1.34e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_19be24bbfb37db5a40c37a92d3430651p3@ARHGAP22
1.46e-35FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_c209e63516f4d7ac35580ca0a2db0e15p2@RCN3
1.46e-35FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_c209e63516f4d7ac35580ca0a2db0e15p2@RCN3
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_87574dec59e2cc6380542cc3912f8fb8p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_87574dec59e2cc6380542cc3912f8fb8p11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_7a8740b60df1c1ea19f20464e438d0e5p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_7a8740b60df1c1ea19f20464e438d0e5p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_13f820e9adca91b3358ff2936cfa8df6p7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_13f820e9adca91b3358ff2936cfa8df6p7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_e3cf8cd6ff6e3e0045eb0213dcb6291bp11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_e3cf8cd6ff6e3e0045eb0213dcb6291bp11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_ed7eba6ef42f160704ba8859eae127cdp@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_ed7eba6ef42f160704ba8859eae127cdp@chrX:160839768..160839780, +
9.95e-35FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_de2c2ef37d2475523e26e2694452445cp@chr9:35685445..35685517, +
9.95e-35FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_de2c2ef37d2475523e26e2694452445cp@chr9:35685445..35685517, +
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_f212158675bdd6f37c5a49cc135298d0p8@Gpr39
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_f212158675bdd6f37c5a49cc135298d0p8@Gpr39
1.89e-34FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_285a32d09ed0ffd4233c1a5a379dd1a1p@chr9:35684475..35684520, +
1.89e-34FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_285a32d09ed0ffd4233c1a5a379dd1a1p@chr9:35684475..35684520, +
4.48e-34FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_b38bcd171ed635934aa78713996e4863p3@IFI27L2
4.48e-34FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_b38bcd171ed635934aa78713996e4863p3@IFI27L2
5.0e-34FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_45aa7afb2ad95218a287942a5a53a0c6p2@LRRC17
5.0e-34FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_45aa7afb2ad95218a287942a5a53a0c6p2@LRRC17
2.06e-33FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_2f5aa9eccc5bd356599b8ff3e04f5095p@chr9:35689148..35689192, +
2.06e-33FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_2f5aa9eccc5bd356599b8ff3e04f5095p@chr9:35689148..35689192, +
7.56e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_fd112f375c990ffb1b77990143cc3d27p1@LRRC17
7.56e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_fd112f375c990ffb1b77990143cc3d27p1@LRRC17
1.21e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_27b509b6ea66a6d04638c76e28971486p6@COL6A2
1.21e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_27b509b6ea66a6d04638c76e28971486p6@COL6A2
2.74e-32FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_0e8971388ed5c4caadf3908840948309p2@COL6A2
2.74e-32FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_0e8971388ed5c4caadf3908840948309p2@COL6A2
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_168b10701836ac8e89f1beac4af9ebbcp@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_168b10701836ac8e89f1beac4af9ebbcp@chr7:96658543..96658553, -
5.83e-32FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_fda9513a3a3b32dd814061165243aa44p@chr4:74703497..74703511, +
5.83e-32FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_fda9513a3a3b32dd814061165243aa44p@chr4:74703497..74703511, +
9.0e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_3fc3287d2407fad22a362541087d518ap@chr2:134548872..134548879, -
9.0e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_3fc3287d2407fad22a362541087d518ap@chr2:134548872..134548879, -
9.7e-32FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_f6aa2bc336913d63bcc248aaf0e48a28p@chr9:35685273..35685313, +
9.7e-32FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_f6aa2bc336913d63bcc248aaf0e48a28p@chr9:35685273..35685313, +
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_06608a33bc709c41b759c67df0af68e8p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_06608a33bc709c41b759c67df0af68e8p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_06608a33bc709c41b759c67df0af68e8p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_06608a33bc709c41b759c67df0af68e8p2@Il6
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_3b68ecb192b0ddb3a8d8165339235571p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_3b68ecb192b0ddb3a8d8165339235571p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_67508f8d87224cb3982245479c670022p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_67508f8d87224cb3982245479c670022p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_3e4f339c847f8837bfb06131db7d32e0p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_3e4f339c847f8837bfb06131db7d32e0p@chr18:52678391..52678395, -
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_377909db18315d77f289188f035e5c33p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_377909db18315d77f289188f035e5c33p@chr6:91222095..91222107, +
9.72e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_92981fa9db3d4dffb752a8db6f3c02ccp2@ELTD1
9.72e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_92981fa9db3d4dffb752a8db6f3c02ccp2@ELTD1
1.01e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_e3e33560648b7334e1c249c4085e5357p@chr7:100773764..100773799, -
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_70136e9782c7d881c35a934de5bd70a4p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_70136e9782c7d881c35a934de5bd70a4p9@Kctd10
1.01e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_e3e33560648b7334e1c249c4085e5357p@chr7:100773764..100773799, -
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_756f6959d39ccd0d6cd6d027f1d86cd2p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_756f6959d39ccd0d6cd6d027f1d86cd2p6@Gpr39
1.26e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_5cba162a05b5d663fd9d7f807f683efep1@AK074416
1.26e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_5cba162a05b5d663fd9d7f807f683efep1@AK074416
1.4e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_db1a2406b8fc41a1cf972fdb957bcdf7p1@CU675118
1.4e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_db1a2406b8fc41a1cf972fdb957bcdf7p1@CU675118
1.8e-30FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_90f78c5360de075d359e684026e0073bp8@COL6A2
1.8e-30FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_90f78c5360de075d359e684026e0073bp8@COL6A2
2.01e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_f44f52973d4f4da72e91693a22345383p2@LTBP1
2.01e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_f44f52973d4f4da72e91693a22345383p2@LTBP1
3.87e-30FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_bab63ddb50ea93410f44352b1af183fcp@chr21:47542827..47542859, -
3.87e-30FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_bab63ddb50ea93410f44352b1af183fcp@chr21:47542827..47542859, -

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