FFCP PHASE1:Hg19::chr17:38613694..38613726,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613694..38613726,+ | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613694..38613726,+ | |description=CAGE_peak_at_chr17:38613694..38613726,+ | ||
|id=chr17:38613694..38613726,+ | |id=chr17:38613694..38613726,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.77e-22!180;CL:0000057!3.27e-14!75;CL:0000183!4.63e-13!59;CL:0000222!9.68e-13!119;CL:0000680!1.81e-12!57;CL:0000056!1.81e-12!57;CL:0000355!1.81e-12!57;CL:0000187!2.40e-11!54;CL:0000393!1.47e-10!60;CL:0000211!1.47e-10!60;CL:0000192!7.31e-10!42;CL:0000514!7.31e-10!42;CL:0002334!1.34e-07!12;CL:0000359!3.81e-07!32 | |ontology_enrichment_celltype=CL:0000055!8.77e-22!180;CL:0000057!3.27e-14!75;CL:0000183!4.63e-13!59;CL:0000222!9.68e-13!119;CL:0000680!1.81e-12!57;CL:0000056!1.81e-12!57;CL:0000355!1.81e-12!57;CL:0000187!2.40e-11!54;CL:0000393!1.47e-10!60;CL:0000211!1.47e-10!60;CL:0000192!7.31e-10!42;CL:0000514!7.31e-10!42;CL:0002334!1.34e-07!12;CL:0000359!3.81e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.76e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.49e-14,76;CL:0002334,1.72e-10,12;CL:0000680,4.98e-09,58;CL:0000056,4.98e-09,58;CL:0000355,4.98e-09,58;CL:0000048,8.31e-08,427;CL:0000187,9.57e-08,55;CL:0000723,2.94e-07,433;CL:0000222,5.32e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!3.61e-18!143;UBERON:0002100!1.73e-17!216;UBERON:0000490!3.08e-13!138;UBERON:0000914!3.61e-13!83;UBERON:0002329!3.61e-13!83;UBERON:0003077!3.61e-13!83;UBERON:0003059!3.61e-13!83;UBERON:0007282!3.61e-13!83;UBERON:0009618!3.61e-13!83;UBERON:0007285!3.61e-13!83;UBERON:0002385!1.31e-12!63;UBERON:0001015!1.31e-12!63;UBERON:0000383!1.31e-12!63;UBERON:0003104!1.39e-12!238;UBERON:0009142!1.39e-12!238;UBERON:0001134!2.70e-12!61;UBERON:0002036!2.70e-12!61;UBERON:0003082!2.70e-12!61;UBERON:0003914!7.41e-12!118;UBERON:0004290!1.37e-11!70;UBERON:0000486!3.32e-10!82;UBERON:0002049!4.88e-10!79;UBERON:0007798!4.88e-10!79;UBERON:0004872!2.31e-09!84;UBERON:0000475!2.67e-09!365;UBERON:0001981!1.12e-08!60;UBERON:0007500!1.12e-08!60;UBERON:0004537!1.12e-08!60;UBERON:0006965!1.12e-08!60;UBERON:0000481!1.46e-08!347;UBERON:0000055!1.34e-07!69;UBERON:0000926!2.77e-07!448;UBERON:0004120!2.77e-07!448;UBERON:0006603!2.77e-07!448;UBERON:0001009!2.77e-07!113;UBERON:0004535!5.55e-07!110 | |ontology_enrichment_uberon=UBERON:0005256!3.61e-18!143;UBERON:0002100!1.73e-17!216;UBERON:0000490!3.08e-13!138;UBERON:0000914!3.61e-13!83;UBERON:0002329!3.61e-13!83;UBERON:0003077!3.61e-13!83;UBERON:0003059!3.61e-13!83;UBERON:0007282!3.61e-13!83;UBERON:0009618!3.61e-13!83;UBERON:0007285!3.61e-13!83;UBERON:0002385!1.31e-12!63;UBERON:0001015!1.31e-12!63;UBERON:0000383!1.31e-12!63;UBERON:0003104!1.39e-12!238;UBERON:0009142!1.39e-12!238;UBERON:0001134!2.70e-12!61;UBERON:0002036!2.70e-12!61;UBERON:0003082!2.70e-12!61;UBERON:0003914!7.41e-12!118;UBERON:0004290!1.37e-11!70;UBERON:0000486!3.32e-10!82;UBERON:0002049!4.88e-10!79;UBERON:0007798!4.88e-10!79;UBERON:0004872!2.31e-09!84;UBERON:0000475!2.67e-09!365;UBERON:0001981!1.12e-08!60;UBERON:0007500!1.12e-08!60;UBERON:0004537!1.12e-08!60;UBERON:0006965!1.12e-08!60;UBERON:0000481!1.46e-08!347;UBERON:0000055!1.34e-07!69;UBERON:0000926!2.77e-07!448;UBERON:0004120!2.77e-07!448;UBERON:0006603!2.77e-07!448;UBERON:0001009!2.77e-07!113;UBERON:0004535!5.55e-07!110 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.13e-08;9!UBERON:0000042;3.13e-08;9!UBERON:0002384;8.99e-08;198!UBERON:0004905;2.26e-07;8!UBERON:0000982;2.26e-07;8!UBERON:0004770;2.26e-07;8!UBERON:0003688;2.52e-07;6!UBERON:0002358;2.52e-07;6!UBERON:0003684;2.52e-07;6!UBERON:0001178;2.52e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.32e-10,160;UBERON:0009142,2.32e-10,160;UBERON:0005256,2.32e-09,122;UBERON:0002385,1.04e-08,64;UBERON:0001015,1.04e-08,64;UBERON:0000383,1.04e-08,64;UBERON:0001134,1.24e-08,62;UBERON:0002036,1.24e-08,62;UBERON:0003082,1.24e-08,62;UBERON:0007503,2.05e-08,78;UBERON:0007524,7.95e-08,73;UBERON:0002100,1.05e-07,199;UBERON:0002329,1.60e-07,71;UBERON:0003059,1.60e-07,71;UBERON:0007282,1.60e-07,71;UBERON:0004290,1.60e-07,71;UBERON:0009618,1.60e-07,71;UBERON:0004905,2.07e-07,8;UBERON:0000982,2.07e-07,8;UBERON:0004770,2.07e-07,8;UBERON:0003688,2.40e-07,6;UBERON:0002358,2.40e-07,6;UBERON:0003684,2.40e-07,6;UBERON:0001178,2.40e-07,6;UBERON:0003077,2.78e-07,72;UBERON:0007285,2.78e-07,72;UBERON:0000490,3.46e-07,148;UBERON:0003914,6.04e-07,117;UBERON:0000486,7.91e-07,83 | |||
|phase1_expression=12.717486548939,8.99222200342129,9.72585388262201,7.00513088471913,7.15137751083661,9.59572376510406,7.59899634504932,0,6.7908263331958,0.491467873003018,0,0.218441372130172,0,6.80714941280256,7.95353701746998,2.01697543935533,1.80808358407193,2.92124036154949,1.46379839637152,0,0.408001382488506,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,11.5660528763061,7.01873074890245,15.2088844908865,0,2.91980922181582,0.189069634328136,1.55210578223795,0.43917392846563,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,2.09749718104953,1.92582629358047,0,0.516833518338658,0,1.00416183829401,2.01414658554573,1.52054421143703,1.46437234528902,1.10298924103761,0,1.07159673940896,0.673588117878509,0.450445921933289,1.53316637465883,0,0.366403487860815,0,0,0.436094052142534,2.98183171017191,2.02608818663328,1.05927344650575,3.15520282823695,2.4826786753885,2.80338800071154,0,2.22000793575444,0,0.538842688278752,0.163461903113459,3.02714855289863,1.15235184896,0,1.24864030732128,0.570471821544449,0.747243402759005,0.469737994575059,0.161872944368132,0,4.28723759635276,0.859840221182376,2.47981874821837,10.6920257155385,11.3742787468136,0,0,0.505008341862199,0.375355559615893,0.831192346452549,1.31693286264251,11.9530240361618,7.06118876861005,0.226864366320042,1.07633781413317,2.77624605464138,2.54318281391474,1.50045548042201,2.98852334791473,1.54584324027377,2.23340227597908,1.18143432568886,1.65642908774038,0.757301322732344,3.58994604704967,6.7891343863901,0.710019185033229,0.806016785821122,1.3564847384839,0,1.09098448236334,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0.36497735907583,0,3.21620469096443,0,2.3218396401599,2.88751792667834,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,1.4763109092493,1.40241773803446,0.4115740113314,2.94017422771084,2.53510069643662,4.91413608338813,1.77236972004421,0,0,0.514703430895577,0,0,0,0,0.325808305310325,2.07986957055916,1.44331342025273,0,0.821860859650752,0.577465791044295,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0.381988425558278,0,3.4214489204541,0.616964956219941,0.600686115687835,0,0.112131084345361,0,1.1734125731352,0.387815147273333,7.15312891703765,0.845302752556,2.6593811658487,1.04007436911366,2.82928111688356,1.41849132023278,2.1313774321288,2.57360388584666,1.62786481617433,1.64648067356154,0.325736184293735,2.48774364119782,3.16780749173372,2.71295439353627,1.74306691720059,4.29883862082845,0,0,0,0.718874566474748,9.18895486672911,0,2.46128221334885,5.54786070886035,1.07436577943937,0,0,0,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,9.44724486237377,14.5049451107306,3.52644530809656,9.77463049194793,16.593895958136,6.30809660135739,4.4513737697231,2.10662269809403,11.3703752027992,3.10419213877515,2.65690239414175,1.29058417979192,3.30157734978715,3.32861967686659,1.71571711905428,0.206768026122887,0,0,1.81876542867756,0,0.30239029332968,10.4205279283886,3.06923946576125,7.57782254969299,14.2234455673828,8.18731598506726,2.73451665944133,8.90508398669946,1.23367755042124,1.59805552781814,1.39616165223476,3.11552657510173,2.67283870457906,0.120859449591622,0.200506470303285,0.0920809889358963,0.918515585316854,1.27463817604702,2.36023946926963,0,0.15403067420883,0.784349769176855,1.46139224653261,0.105551628892876,2.27466768141793,1.53084334748864,0.863663664408557,3.08454505380579,0.812839312631559,4.01351819083883,0,0,0.223874754722178,0,0,0,0.328014645699706,0,1.03041011647722,0.183138929636687,0,1.14853107599234,0,3.21367859688319,3.19013370364003,2.31072925671967,0.614014698904518,0.413509717453592,2.90034661144339,3.33538396002726,1.02271952899321,1.60257664164127,0.165284915360978,0.576570202095319,0,0,4.64845549297286,5.66662224295152,0.6970372701606,0.616067160352178,0,0.869932992075073,0.74129687641568,1.14499909393593,2.232950216158,4.42931194606216,1.90630193923825,0.767693373934002,1.28381696410176,1.90921948755562,0,0.899362287916574,1.92175920815238,0.942499218765491,1.2130948894399,0,0.842516912477962,0.48763373908959,1.70599442741899,2.11300293513511,3.00299805097569,2.96951407102797,2.26016233240486,2.2054613741845,5.30751180192976,2.19225442626881,2.89387767133344,1.31178950409327,0.202910376962704,0.92947049429925,0.563391205064483,0.573645408816206,0.392996164052485,0.7133421029625,2.12856638442359,23.0107322474454,22.3920527212733,0.379473173765715,0.699869440489966,0.288666338176536,0,1.08890984861323,1.03558180854457,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.677167111206413,0.1605880751037,0,0,0,0,0,0,0,0,0,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| ||
|short_description=p@chr17:38613694..38613726,+ | |short_description=p@chr17:38613694..38613726,+ | ||
}} | }} |
Latest revision as of 16:29, 25 July 2015
Short description: | p@chr17:38613694..38613726, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613694..38613726, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.49e-14 | 76 |
preadipocyte | 1.72e-10 | 12 |
muscle precursor cell | 4.98e-09 | 58 |
myoblast | 4.98e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.98e-09 | 58 |
multi fate stem cell | 8.31e-08 | 427 |
muscle cell | 9.57e-08 | 55 |
somatic stem cell | 2.94e-07 | 433 |
mesodermal cell | 5.32e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.32e-10 | 160 |
entire embryonic mesenchyme | 2.32e-10 | 160 |
trunk mesenchyme | 2.32e-09 | 122 |
muscle tissue | 1.04e-08 | 64 |
musculature | 1.04e-08 | 64 |
musculature of body | 1.04e-08 | 64 |
skeletal muscle tissue | 1.24e-08 | 62 |
striated muscle tissue | 1.24e-08 | 62 |
myotome | 1.24e-08 | 62 |
epithelial vesicle | 2.05e-08 | 78 |
dense mesenchyme tissue | 7.95e-08 | 73 |
trunk | 1.05e-07 | 199 |
somite | 1.60e-07 | 71 |
presomitic mesoderm | 1.60e-07 | 71 |
presumptive segmental plate | 1.60e-07 | 71 |
dermomyotome | 1.60e-07 | 71 |
trunk paraxial mesoderm | 1.60e-07 | 71 |
articulation | 2.07e-07 | 8 |
skeletal joint | 2.07e-07 | 8 |
articular system | 2.07e-07 | 8 |
omentum | 2.40e-07 | 6 |
peritoneum | 2.40e-07 | 6 |
abdominal cavity | 2.40e-07 | 6 |
visceral peritoneum | 2.40e-07 | 6 |
paraxial mesoderm | 2.78e-07 | 72 |
presumptive paraxial mesoderm | 2.78e-07 | 72 |
unilaminar epithelium | 3.46e-07 | 148 |
epithelial tube | 6.04e-07 | 117 |
multilaminar epithelium | 7.91e-07 | 83 |