FFCP PHASE1:Hg19::chr22:30939618..30939629,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:30939618..30939629,+ to FFCP PHASE1:Hg19::chr22:30939618..30939629,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr22:30939618..30939629,+ | |||
|coexpression_cluster_id=C2607 | |||
|description=CAGE_peak_at_chr22:30939618..30939629,+ | |||
|id=chr22:30939618..30939629,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.87e-16!76;CL:0002009!2.28e-16!65;CL:0002057!2.53e-16!42;CL:0002194!2.72e-16!63;CL:0000576!2.72e-16!63;CL:0000040!2.72e-16!63;CL:0000559!2.72e-16!63;CL:0000557!6.30e-15!71;CL:0000839!3.86e-14!70;CL:0000860!1.66e-13!45;CL:0000763!5.94e-09!112;CL:0000049!5.94e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.11e-23;33!CL:0002057;1.11e-23;33!CL:0000473;1.47e-23;39!CL:0000234;1.47e-23;39!CL:0000576;5.00e-13;48!CL:0000766;2.72e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.70e-26,48;CL:0000234,6.70e-26,48;CL:0002194,4.82e-24,59;CL:0000576,4.82e-24,59;CL:0000040,4.82e-24,59;CL:0000559,4.82e-24,59;CL:0002009,1.81e-23,61;CL:0000766,5.07e-22,72;CL:0000860,1.46e-21,42;CL:0002057,1.46e-21,42;CL:0000557,3.20e-20,67;CL:0000839,5.01e-20,66;CL:0000763,1.25e-13,108;CL:0000049,1.25e-13,108 | |||
|ontology_enrichment_development_v019=CL:0002057;7.25e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.30e-13!80;UBERON:0002193!9.18e-12!112;UBERON:0002390!1.54e-11!102;UBERON:0003061!1.54e-11!102;UBERON:0001049!1.88e-11!57;UBERON:0005068!1.88e-11!57;UBERON:0006241!1.88e-11!57;UBERON:0007135!1.88e-11!57;UBERON:0001893!1.65e-10!34;UBERON:0001474!1.89e-10!86;UBERON:0002020!2.30e-10!34;UBERON:0003528!2.30e-10!34;UBERON:0002780!2.45e-10!41;UBERON:0001890!2.45e-10!41;UBERON:0006240!2.45e-10!41;UBERON:0000468!2.89e-10!659;UBERON:0004765!2.94e-10!101;UBERON:0001434!2.94e-10!101;UBERON:0002791!3.90e-10!33;UBERON:0002405!4.19e-10!115;UBERON:0001869!5.48e-10!32;UBERON:0003080!1.26e-09!42;UBERON:0000467!1.36e-09!625;UBERON:0000480!2.27e-09!626;UBERON:0002616!5.68e-09!59;UBERON:0002619!5.97e-09!22;UBERON:0007023!7.62e-09!115;UBERON:0003081!1.23e-08!216;UBERON:0002204!1.66e-08!167;UBERON:0000956!2.31e-08!25;UBERON:0000203!2.31e-08!25;UBERON:0000923!2.78e-08!604;UBERON:0005291!2.78e-08!604;UBERON:0006598!2.78e-08!604;UBERON:0002532!2.78e-08!604;UBERON:0002050!2.92e-08!605;UBERON:0005423!2.92e-08!605;UBERON:0002346!3.28e-08!90;UBERON:0001950!3.52e-08!20;UBERON:0000922!8.77e-08!612;UBERON:0003075!9.59e-08!86;UBERON:0007284!9.59e-08!86;UBERON:0000955!1.26e-07!69;UBERON:0006238!1.26e-07!69;UBERON:0001017!4.18e-07!82;UBERON:0005743!8.40e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.52e-11;22!UBERON:0001893;1.11e-10;34!UBERON:0001869;2.42e-10;32!UBERON:0002791;2.80e-10;32!UBERON:0003528;3.62e-10;34!UBERON:0002020;3.62e-10;34!UBERON:0001950;4.17e-10;20!UBERON:0002780;5.31e-09;41!UBERON:0001890;5.31e-09;41!UBERON:0000956;6.89e-09;25!UBERON:0000203;6.89e-09;25!UBERON:0000073;3.07e-07;53!UBERON:0002616;3.07e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.38e-16,76;UBERON:0002390,1.72e-15,98;UBERON:0003061,1.72e-15,98;UBERON:0002193,1.93e-15,108;UBERON:0002405,1.18e-13,93;UBERON:0001474,2.04e-13,82;UBERON:0001049,1.81e-12,56;UBERON:0005068,1.81e-12,56;UBERON:0006241,1.81e-12,56;UBERON:0007135,1.81e-12,56;UBERON:0004765,1.93e-12,90;UBERON:0002780,3.33e-12,41;UBERON:0001890,3.33e-12,41;UBERON:0003080,3.33e-12,41;UBERON:0006240,3.33e-12,41;UBERON:0000073,3.51e-12,53;UBERON:0002616,3.51e-12,53;UBERON:0001893,3.75e-12,34;UBERON:0001434,4.79e-12,100;UBERON:0003528,5.70e-12,34;UBERON:0002020,5.70e-12,34;UBERON:0001869,1.82e-11,32;UBERON:0002791,2.03e-11,32;UBERON:0002619,3.79e-11,22;UBERON:0001950,3.92e-10,20;UBERON:0000956,5.91e-09,25;UBERON:0000203,5.91e-09,25;UBERON:0000955,3.25e-08,68;UBERON:0006238,3.25e-08,68;UBERON:0002204,3.63e-08,167;UBERON:0007023,1.82e-07,114;UBERON:0003081,2.91e-07,203;UBERON:0001017,6.14e-07,81 | |||
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| ||
|short_description=p@chr22:30939618..30939629,+ | |||
}} | }} |
Latest revision as of 20:10, 28 July 2015
Short description: | p@chr22:30939618..30939629, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30939618..30939629, + |
Coexpression cluster: | C2607_Neutrophils_medial_Monocytederived_CD14_amygdala_renal_occipital |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.70e-26 | 48 |
phagocyte | 6.70e-26 | 48 |
monopoietic cell | 4.82e-24 | 59 |
monocyte | 4.82e-24 | 59 |
monoblast | 4.82e-24 | 59 |
promonocyte | 4.82e-24 | 59 |
macrophage dendritic cell progenitor | 1.81e-23 | 61 |
myeloid leukocyte | 5.07e-22 | 72 |
classical monocyte | 1.46e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.46e-21 | 42 |
granulocyte monocyte progenitor cell | 3.20e-20 | 67 |
myeloid lineage restricted progenitor cell | 5.01e-20 | 66 |
myeloid cell | 1.25e-13 | 108 |
common myeloid progenitor | 1.25e-13 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.38e-16 | 76 |
hematopoietic system | 1.72e-15 | 98 |
blood island | 1.72e-15 | 98 |
hemolymphoid system | 1.93e-15 | 108 |
immune system | 1.18e-13 | 93 |
bone element | 2.04e-13 | 82 |
neural tube | 1.81e-12 | 56 |
neural rod | 1.81e-12 | 56 |
future spinal cord | 1.81e-12 | 56 |
neural keel | 1.81e-12 | 56 |
skeletal element | 1.93e-12 | 90 |
regional part of forebrain | 3.33e-12 | 41 |
forebrain | 3.33e-12 | 41 |
anterior neural tube | 3.33e-12 | 41 |
future forebrain | 3.33e-12 | 41 |
regional part of nervous system | 3.51e-12 | 53 |
regional part of brain | 3.51e-12 | 53 |
telencephalon | 3.75e-12 | 34 |
skeletal system | 4.79e-12 | 100 |
brain grey matter | 5.70e-12 | 34 |
gray matter | 5.70e-12 | 34 |
cerebral hemisphere | 1.82e-11 | 32 |
regional part of telencephalon | 2.03e-11 | 32 |
regional part of cerebral cortex | 3.79e-11 | 22 |
neocortex | 3.92e-10 | 20 |
cerebral cortex | 5.91e-09 | 25 |
pallium | 5.91e-09 | 25 |
brain | 3.25e-08 | 68 |
future brain | 3.25e-08 | 68 |
musculoskeletal system | 3.63e-08 | 167 |
adult organism | 1.82e-07 | 114 |
lateral plate mesoderm | 2.91e-07 | 203 |
central nervous system | 6.14e-07 | 81 |