FFCP PHASE1:Hg19::chr4:139113357..139113376,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:139113357..139113376,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr4:139113357..139113376,- | |description=CAGE_peak_at_chr4:139113357..139113376,- | ||
|id=chr4:139113357..139113376,- | |id=chr4:139113357..139113376,- | ||
|ontology_enrichment_celltype=CL:0002057!1.55e-44!42;CL:0000860!5.83e-41!45;CL:0002009!1.87e-33!65;CL:0002194!4.67e-30!63;CL:0000576!4.67e-30!63;CL:0000040!4.67e-30!63;CL:0000559!4.67e-30!63;CL:0000557!7.80e-30!71;CL:0000839!3.56e-26!70;CL:0000766!3.52e-25!76;CL:0000763!5.48e-22!112;CL:0000049!5.48e-22!112;CL:0000738!2.81e-21!140;CL:0002031!1.13e-18!124;CL:0002087!3.18e-17!119;CL:0002032!3.31e-16!165;CL:0000837!3.31e-16!165;CL:0000037!4.60e-16!172;CL:0000566!4.60e-16!172;CL:0000988!1.52e-14!182;CL:0000453!7.10e-13!5;CL:0000451!3.93e-10!10;CL:0000990!1.85e-09!8 | |ontology_enrichment_celltype=CL:0002057!1.55e-44!42;CL:0000860!5.83e-41!45;CL:0002009!1.87e-33!65;CL:0002194!4.67e-30!63;CL:0000576!4.67e-30!63;CL:0000040!4.67e-30!63;CL:0000559!4.67e-30!63;CL:0000557!7.80e-30!71;CL:0000839!3.56e-26!70;CL:0000766!3.52e-25!76;CL:0000763!5.48e-22!112;CL:0000049!5.48e-22!112;CL:0000738!2.81e-21!140;CL:0002031!1.13e-18!124;CL:0002087!3.18e-17!119;CL:0002032!3.31e-16!165;CL:0000837!3.31e-16!165;CL:0000037!4.60e-16!172;CL:0000566!4.60e-16!172;CL:0000988!1.52e-14!182;CL:0000453!7.10e-13!5;CL:0000451!3.93e-10!10;CL:0000990!1.85e-09!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.04e-80;33!CL:0002057;2.04e-80;33!CL:0000473;1.28e-52;39!CL:0000234;1.28e-52;39!CL:0000576;6.16e-37;48!CL:0000766;2.87e-22;69!CL:0002087;7.31e-09;104!CL:0000763;3.70e-08;100!CL:0000453;6.85e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.21e-67,42;CL:0002057,4.21e-67,42;CL:0000473,2.80e-58,48;CL:0000234,2.80e-58,48;CL:0002009,3.21e-49,61;CL:0002194,6.40e-46,59;CL:0000576,6.40e-46,59;CL:0000040,6.40e-46,59;CL:0000559,6.40e-46,59;CL:0000557,1.49e-44,67;CL:0000839,9.44e-41,66;CL:0000766,4.15e-37,72;CL:0000763,3.66e-29,108;CL:0000049,3.66e-29,108;CL:0002031,2.11e-23,120;CL:0000738,2.08e-22,136;CL:0002087,5.22e-22,115;CL:0002032,2.41e-18,161;CL:0000837,2.41e-18,161;CL:0000037,2.02e-17,168;CL:0000988,2.44e-16,177;CL:0000134,6.29e-08,354;CL:0002320,1.09e-07,361;CL:0000453,7.05e-07,5;CL:0000219,7.51e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.83e-49;42!CL:0000049;1.12e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;8.49e-16;2!DOID:3371;3.06e-09;1!DOID:4549;3.06e-09;1!DOID:5861;3.06e-09;1!DOID:6496;3.06e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.15e-15,2;DOID:3371,3.06e-09,1;DOID:4549,3.06e-09,1;DOID:5861,3.06e-09,1;DOID:6496,3.06e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.01e-25!80;UBERON:0001474!8.00e-25!86;UBERON:0002405!7.67e-20!115;UBERON:0004765!1.03e-19!101;UBERON:0001434!1.03e-19!101;UBERON:0002390!3.09e-19!102;UBERON:0003061!3.09e-19!102;UBERON:0002193!1.11e-16!112;UBERON:0002204!4.59e-09!167 | |ontology_enrichment_uberon=UBERON:0002371!2.01e-25!80;UBERON:0001474!8.00e-25!86;UBERON:0002405!7.67e-20!115;UBERON:0004765!1.03e-19!101;UBERON:0001434!1.03e-19!101;UBERON:0002390!3.09e-19!102;UBERON:0003061!3.09e-19!102;UBERON:0002193!1.11e-16!112;UBERON:0002204!4.59e-09!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.65e-08;1!UBERON:0003703;1.65e-08;1!UBERON:0001174;1.65e-08;1!UBERON:0004914;1.65e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.07e-39,82;UBERON:0002371,6.45e-39,76;UBERON:0004765,7.16e-36,90;UBERON:0001434,6.11e-32,100;UBERON:0002405,3.31e-31,93;UBERON:0002390,1.93e-29,98;UBERON:0003061,1.93e-29,98;UBERON:0002193,2.14e-26,108;UBERON:0002204,1.21e-17,167;UBERON:0003081,2.57e-12,203;UBERON:0004913,1.65e-08,1;UBERON:0003703,1.65e-08,1;UBERON:0001174,1.65e-08,1;UBERON:0004914,1.65e-08,1;UBERON:0000926,1.97e-07,315;UBERON:0004120,1.97e-07,315;UBERON:0006603,1.97e-07,315;UBERON:0002384,2.30e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0,0.314843125254717,0,0.383829398097213,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0.145398238779565,1.88937971844405,0.485168122375632,0.697287110717054,2.87817521615278,3.09706370895104,4.02769349251011,14.3449995656296,16.7902383220896,0.344745680736619,2.5819387343353,1.35426486594342,0.564727018627814,5.18521685109907,2.9214052977861,0.918251677112708,3.85114832491312,1.27867425159808,0.989553900560148,7.18069167437875,6.39337125799041,0.290209238628584,2.26954089876456,0,17.8386552332288,40.6756676367757,57.772232691561,0.605399502633369,1.47311054395026,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0.246169610922139,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.508507300585533,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0.313932918407225,0,0.284609546029793,0.138674673013139,0,0,0.0870592065804026,0,0,0,0,0,0.0969890164884194,248.617508889956,0,0,0,0,0,0,0,0,0,0.80175617316141,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630265458457789,0.659326867049332,0.674035438541849,0,0,0,0,0,0,0,18.447859107223,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0.303859956177382,0,0.584580926518165,0.664324201566815,1.30852315404675,0,0,0.422624246717254,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,1.24082554265728,0,0,1.07965256976767,12.8013821231383,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199882311849858,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0,0.314843125254717,0,0.383829398097213,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0.145398238779565,1.88937971844405,0.485168122375632,0.697287110717054,2.87817521615278,3.09706370895104,4.02769349251011,14.3449995656296,16.7902383220896,0.344745680736619,2.5819387343353,1.35426486594342,0.564727018627814,5.18521685109907,2.9214052977861,0.918251677112708,3.85114832491312,1.27867425159808,0.989553900560148,7.18069167437875,6.39337125799041,0.290209238628584,2.26954089876456,0,17.8386552332288,40.6756676367757,57.772232691561,0.605399502633369,1.47311054395026,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0.246169610922139,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.508507300585533,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0.313932918407225,0,0.284609546029793,0.138674673013139,0,0,0.0870592065804026,0,0,0,0,0,0.0969890164884194,248.617508889956,0,0,0,0,0,0,0,0,0,0.80175617316141,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630265458457789,0.659326867049332,0.674035438541849,0,0,0,0,0,0,0,18.447859107223,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0.303859956177382,0,0.584580926518165,0.664324201566815,1.30852315404675,0,0,0.422624246717254,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,1.24082554265728,0,0,1.07965256976767,12.8013821231383,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199882311849858,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:139113357..139113376,- | |short_description=p@chr4:139113357..139113376,- | ||
}} | }} |
Latest revision as of 01:40, 30 July 2015
Short description: | p@chr4:139113357..139113376, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:139113357..139113376, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.21e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.21e-67 | 42 |
defensive cell | 2.80e-58 | 48 |
phagocyte | 2.80e-58 | 48 |
macrophage dendritic cell progenitor | 3.21e-49 | 61 |
monopoietic cell | 6.40e-46 | 59 |
monocyte | 6.40e-46 | 59 |
monoblast | 6.40e-46 | 59 |
promonocyte | 6.40e-46 | 59 |
granulocyte monocyte progenitor cell | 1.49e-44 | 67 |
myeloid lineage restricted progenitor cell | 9.44e-41 | 66 |
myeloid leukocyte | 4.15e-37 | 72 |
myeloid cell | 3.66e-29 | 108 |
common myeloid progenitor | 3.66e-29 | 108 |
hematopoietic lineage restricted progenitor cell | 2.11e-23 | 120 |
leukocyte | 2.08e-22 | 136 |
nongranular leukocyte | 5.22e-22 | 115 |
hematopoietic oligopotent progenitor cell | 2.41e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.41e-18 | 161 |
hematopoietic stem cell | 2.02e-17 | 168 |
hematopoietic cell | 2.44e-16 | 177 |
mesenchymal cell | 6.29e-08 | 354 |
connective tissue cell | 1.09e-07 | 361 |
Langerhans cell | 7.05e-07 | 5 |
motile cell | 7.51e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.07e-39 | 82 |
bone marrow | 6.45e-39 | 76 |
skeletal element | 7.16e-36 | 90 |
skeletal system | 6.11e-32 | 100 |
immune system | 3.31e-31 | 93 |
hematopoietic system | 1.93e-29 | 98 |
blood island | 1.93e-29 | 98 |
hemolymphoid system | 2.14e-26 | 108 |
musculoskeletal system | 1.21e-17 | 167 |
lateral plate mesoderm | 2.57e-12 | 203 |
hepatopancreatic ampulla | 1.65e-08 | 1 |
extrahepatic bile duct | 1.65e-08 | 1 |
common bile duct | 1.65e-08 | 1 |
duodenal papilla | 1.65e-08 | 1 |
mesoderm | 1.97e-07 | 315 |
mesoderm-derived structure | 1.97e-07 | 315 |
presumptive mesoderm | 1.97e-07 | 315 |
connective tissue | 2.30e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.15e-15 | 2 |
chondrosarcoma | 3.06e-09 | 1 |
extraosseous chondrosarcoma | 3.06e-09 | 1 |
myxoid chondrosarcoma | 3.06e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 3.06e-09 | 1 |