FFCP PHASE1:Hg19::chr4:3310694..3310716,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:3310694..3310716,- | |||
|coexpression_cluster_id=C97 | |||
|description=CAGE_peak_at_chr4:3310694..3310716,- | |description=CAGE_peak_at_chr4:3310694..3310716,- | ||
|id=chr4:3310694..3310716,- | |id=chr4:3310694..3310716,- | ||
|ontology_enrichment_celltype=CL:0000167!9.99e-30!1;CL:0000164!9.99e-30!1;CL:0000502!9.99e-30!1;CL:0000172!9.99e-30!1;CL:0000173!9.99e-30!1;CL:0002351!9.99e-30!1;CL:0002553!1.33e-29!1;CL:0000242!1.78e-15!2;CL:0000082!5.50e-07!19;CL:0000312!5.70e-07!5 | |ontology_enrichment_celltype=CL:0000167!9.99e-30!1;CL:0000164!9.99e-30!1;CL:0000502!9.99e-30!1;CL:0000172!9.99e-30!1;CL:0000173!9.99e-30!1;CL:0002351!9.99e-30!1;CL:0002553!1.33e-29!1;CL:0000242!1.78e-15!2;CL:0000082!5.50e-07!19;CL:0000312!5.70e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000167;3.34e-66;1!CL:0000164;3.34e-66;1!CL:0000502;3.34e-66;1!CL:0000172;3.34e-66;1!CL:0002553;3.34e-66;1!CL:0000173;3.34e-66;1!CL:0000082;5.09e-15;19!CL:0000150;1.16e-08;9!CL:0000163;1.16e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.39e-66,1;CL:0000164,2.39e-66,1;CL:0000502,2.39e-66,1;CL:0000172,2.39e-66,1;CL:0000173,2.39e-66,1;CL:0002351,2.39e-66,1;CL:0002553,4.66e-66,1;CL:0000082,5.27e-15,19;CL:0000150,1.12e-08,9;CL:0000163,1.12e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002351;3.34e-66;1!UBERON:0008947;3.03e-10;29!UBERON:0001041;6.09e-10;30 | |||
|ontology_enrichment_disease=DOID:4430!9.99e-30!1;DOID:1324!1.31e-08!15;DOID:5409!1.70e-08!4;DOID:0050615!3.97e-08!16;DOID:4362!6.04e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:4430;3.34e-66;1!DOID:1324;1.08e-18;15!DOID:5409;7.35e-18;4!DOID:0050615;1.33e-17;16!DOID:169;2.59e-12;6!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9!DOID:171;6.34e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,2.39e-66,1;DOID:1324,1.13e-18,15;DOID:5409,7.35e-18,4;DOID:0050615,1.39e-17,16;DOID:169,2.45e-12,6;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9;DOID:171,6.13e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007190!4.20e-29!1;UBERON:0004802!5.50e-07!19;UBERON:0000115!5.50e-07!19 | |ontology_enrichment_uberon=UBERON:0007190!4.20e-29!1;UBERON:0004802!5.50e-07!19;UBERON:0000115!5.50e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0004802;5.09e-15;19!UBERON:0000115;5.09e-15;19!UBERON:0002048;3.89e-13;22!UBERON:0004807;3.89e-13;22!UBERON:0000117;3.89e-13;22!UBERON:0000171;3.89e-13;22!UBERON:0000170;3.89e-13;22!UBERON:0000072;2.73e-09;37!UBERON:0005181;2.74e-09;35!UBERON:0005911;1.22e-08;36!UBERON:0005178;5.52e-08;34!UBERON:0002224;5.52e-08;34!UBERON:0000065;4.40e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,5.27e-15,19;UBERON:0000115,5.27e-15,19;UBERON:0002048,4.01e-13,22;UBERON:0000117,4.01e-13,22;UBERON:0000171,4.01e-13,22;UBERON:0000170,4.01e-13,22;UBERON:0005597,4.01e-13,22;UBERON:0000118,4.01e-13,22;UBERON:0004807,1.47e-10,28;UBERON:0005178,6.80e-09,34;UBERON:0002224,6.80e-09,34;UBERON:0005181,1.14e-08,35;UBERON:0005153,2.92e-08,37;UBERON:0008947,4.52e-08,38;UBERON:0003258,4.52e-08,38;UBERON:0000072,1.00e-06,47;UBERON:0005157,1.00e-06,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,8.60488208330039,0,0,0,0,2.82811856521951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,8.60488208330039,0,0,0,0,2.82811856521951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:3310694..3310716,- | |short_description=p@chr4:3310694..3310716,- | ||
}} | }} |
Latest revision as of 04:47, 30 July 2015
Short description: | p@chr4:3310694..3310716, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:3310694..3310716, - |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.39e-66 | 1 |
enteroendocrine cell | 2.39e-66 | 1 |
type D enteroendocrine cell | 2.39e-66 | 1 |
somatostatin secreting cell | 2.39e-66 | 1 |
pancreatic D cell | 2.39e-66 | 1 |
progenitor cell of endocrine pancreas | 2.39e-66 | 1 |
lung fibroblast | 4.66e-66 | 1 |
epithelial cell of lung | 5.27e-15 | 19 |
glandular epithelial cell | 1.12e-08 | 9 |
endocrine cell | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 5.27e-15 | 19 |
lung epithelium | 5.27e-15 | 19 |
lung | 4.01e-13 | 22 |
respiratory tube | 4.01e-13 | 22 |
respiration organ | 4.01e-13 | 22 |
pair of lungs | 4.01e-13 | 22 |
lung primordium | 4.01e-13 | 22 |
lung bud | 4.01e-13 | 22 |
respiratory system epithelium | 1.47e-10 | 28 |
thoracic cavity element | 6.80e-09 | 34 |
thoracic cavity | 6.80e-09 | 34 |
thoracic segment organ | 1.14e-08 | 35 |
epithelial bud | 2.92e-08 | 37 |
respiratory primordium | 4.52e-08 | 38 |
endoderm of foregut | 4.52e-08 | 38 |
segment of respiratory tract | 1.00e-06 | 47 |
epithelial fold | 1.00e-06 | 47 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 2.39e-66 | 1 |
lung cancer | 1.13e-18 | 15 |
lung small cell carcinoma | 7.35e-18 | 4 |
respiratory system cancer | 1.39e-17 | 16 |
neuroendocrine tumor | 2.45e-12 | 6 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |
neuroectodermal tumor | 6.13e-08 | 10 |