FFCP PHASE1:Mm9::chr17:26268258..26268272,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:26268258..26268272,+ | |||
|description=CAGE_peak_at_chr17:26268258..26268272,+ | |description=CAGE_peak_at_chr17:26268258..26268272,+ | ||
|id=chr17:26268258..26268272,+ | |id=chr17:26268258..26268272,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.87e-13!23;CL:0000337!2.87e-13!23;CL:0000540!2.97e-08!33;CL:0000047!2.97e-08!33;CL:0000031!2.97e-08!33;CL:0000404!2.97e-08!33;CL:0002613!8.96e-08!3;CL:0000120!2.03e-07!3;CL:0002610!2.34e-07!3;CL:0002614!5.64e-07!3 | |ontology_enrichment_celltype=CL:0000117!2.87e-13!23;CL:0000337!2.87e-13!23;CL:0000540!2.97e-08!33;CL:0000047!2.97e-08!33;CL:0000031!2.97e-08!33;CL:0000404!2.97e-08!33;CL:0002613!8.96e-08!3;CL:0000120!2.03e-07!3;CL:0002610!2.34e-07!3;CL:0002614!5.64e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.30e-31,23;CL:0000337,4.30e-31,23;CL:0002613,1.19e-23,3;CL:0000120,2.17e-22,3;CL:0002610,3.58e-22,3;CL:0000540,1.83e-21,33;CL:0000047,1.83e-21,33;CL:0000031,1.83e-21,33;CL:0000404,1.83e-21,33;CL:0000393,4.80e-18,39;CL:0000211,4.80e-18,39;CL:0002319,2.71e-16,43;CL:0000221,6.62e-16,44;CL:0000133,6.62e-16,44;CL:0002321,1.13e-09,70;CL:0000723,3.23e-07,91;CL:0000048,3.23e-07,91 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002420!7.67e-13!8;UBERON:0007245!7.67e-13!8;UBERON:0010009!7.67e-13!8;UBERON:0010011!7.67e-13!8;UBERON:0000454!7.67e-13!8;UBERON:0002950!5.47e-09!4;UBERON:0001891!5.47e-09!4;UBERON:0009616!5.47e-09!4;UBERON:0001017!1.92e-08!73;UBERON:0005743!1.92e-08!73;UBERON:0002616!2.28e-08!49;UBERON:0000955!4.07e-08!50;UBERON:0006238!4.07e-08!50;UBERON:0000073!4.52e-08!75;UBERON:0001016!4.52e-08!75;UBERON:0000369!1.48e-07!5;UBERON:0002435!1.48e-07!5;UBERON:0000204!1.48e-07!5;UBERON:0010082!1.48e-07!5;UBERON:0004684!2.34e-07!3;UBERON:0002275!2.34e-07!3;UBERON:0000033!2.87e-07!63;UBERON:0002038!5.64e-07!3;UBERON:0002308!5.64e-07!3;UBERON:0009663!5.64e-07!3;UBERON:0009661!5.64e-07!3;UBERON:0006331!5.64e-07!3;UBERON:0000125!5.64e-07!3 | |ontology_enrichment_uberon=UBERON:0002420!7.67e-13!8;UBERON:0007245!7.67e-13!8;UBERON:0010009!7.67e-13!8;UBERON:0010011!7.67e-13!8;UBERON:0000454!7.67e-13!8;UBERON:0002950!5.47e-09!4;UBERON:0001891!5.47e-09!4;UBERON:0009616!5.47e-09!4;UBERON:0001017!1.92e-08!73;UBERON:0005743!1.92e-08!73;UBERON:0002616!2.28e-08!49;UBERON:0000955!4.07e-08!50;UBERON:0006238!4.07e-08!50;UBERON:0000073!4.52e-08!75;UBERON:0001016!4.52e-08!75;UBERON:0000369!1.48e-07!5;UBERON:0002435!1.48e-07!5;UBERON:0000204!1.48e-07!5;UBERON:0010082!1.48e-07!5;UBERON:0004684!2.34e-07!3;UBERON:0002275!2.34e-07!3;UBERON:0000033!2.87e-07!63;UBERON:0002038!5.64e-07!3;UBERON:0002308!5.64e-07!3;UBERON:0009663!5.64e-07!3;UBERON:0009661!5.64e-07!3;UBERON:0006331!5.64e-07!3;UBERON:0000125!5.64e-07!3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.58e-22,3;UBERON:0002275,3.58e-22,3;UBERON:0002420,2.00e-15,8;UBERON:0007245,2.00e-15,8;UBERON:0010009,2.00e-15,8;UBERON:0010011,2.00e-15,8;UBERON:0000454,2.00e-15,8;UBERON:0000369,1.85e-14,5;UBERON:0002435,1.85e-14,5;UBERON:0000204,1.85e-14,5;UBERON:0010082,1.85e-14,5;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0000073,2.42e-10,54;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0002259,7.41e-09,1;UBERON:0002314,7.41e-09,1;UBERON:0004061,7.41e-09,1;UBERON:0006777,7.41e-09,1;UBERON:0005882,7.41e-09,1;UBERON:0002950,2.67e-08,4;UBERON:0001891,2.67e-08,4;UBERON:0009616,2.67e-08,4;UBERON:0010286,2.67e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,1.05798195854407,2.53532561402472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,2.042997409363,1.99688493233117,5.01167893374737,5.03182039813253,4.68822033501084,0.279182999001381,1.68828783009504,0.916789486660861,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,2.54644086988199,0.457500602818626,0,0.173824320192276,0,0.41557608911912,1.62241263067758,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.682934423016537,0.243106717068294,0,0,0,0.206035057238894,0,0,0.25347929989024,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0.188218760830661,0.25384382367503,0,0,0,0,0.237270036248348,0,0.409231043169689,0.154936841185966,0,0.749431733813838,0,0.214871054048298,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,1.05798195854407,2.53532561402472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,2.042997409363,1.99688493233117,5.01167893374737,5.03182039813253,4.68822033501084,0.279182999001381,1.68828783009504,0.916789486660861,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,2.54644086988199,0.457500602818626,0,0.173824320192276,0,0.41557608911912,1.62241263067758,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.682934423016537,0.243106717068294,0,0,0,0.206035057238894,0,0,0.25347929989024,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0.188218760830661,0.25384382367503,0,0,0,0,0.237270036248348,0,0.409231043169689,0.154936841185966,0,0.749431733813838,0,0.214871054048298,0,0,0 | ||
|short_description=p@chr17:26268258..26268272,+ | |short_description=p@chr17:26268258..26268272,+ | ||
}} | }} |
Latest revision as of 11:36, 4 August 2015
Short description: | p@chr17:26268258..26268272, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:26268258..26268272, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.30e-31 | 23 |
neuroblast (sensu Vertebrata) | 4.30e-31 | 23 |
striatum neuron | 1.19e-23 | 3 |
granule cell | 2.17e-22 | 3 |
raphe nuclei neuron | 3.58e-22 | 3 |
neuron | 1.83e-21 | 33 |
neuronal stem cell | 1.83e-21 | 33 |
neuroblast | 1.83e-21 | 33 |
electrically signaling cell | 1.83e-21 | 33 |
electrically responsive cell | 4.80e-18 | 39 |
electrically active cell | 4.80e-18 | 39 |
neural cell | 2.71e-16 | 43 |
ectodermal cell | 6.62e-16 | 44 |
neurectodermal cell | 6.62e-16 | 44 |
embryonic cell | 1.13e-09 | 70 |
somatic stem cell | 3.23e-07 | 91 |
multi fate stem cell | 3.23e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 3.58e-22 | 3 |
reticular formation | 3.58e-22 | 3 |
basal ganglion | 2.00e-15 | 8 |
nuclear complex of neuraxis | 2.00e-15 | 8 |
aggregate regional part of brain | 2.00e-15 | 8 |
collection of basal ganglia | 2.00e-15 | 8 |
cerebral subcortex | 2.00e-15 | 8 |
corpus striatum | 1.85e-14 | 5 |
striatum | 1.85e-14 | 5 |
ventral part of telencephalon | 1.85e-14 | 5 |
future corpus striatum | 1.85e-14 | 5 |
central nervous system | 1.35e-13 | 73 |
nervous system | 3.30e-13 | 75 |
regional part of nervous system | 2.42e-10 | 54 |
ectoderm-derived structure | 3.22e-10 | 95 |
ectoderm | 3.22e-10 | 95 |
presumptive ectoderm | 3.22e-10 | 95 |
corpora quadrigemina | 7.41e-09 | 1 |
midbrain tectum | 7.41e-09 | 1 |
neural tube mantle layer | 7.41e-09 | 1 |
tectal plate | 7.41e-09 | 1 |
neural tube alar plate | 7.41e-09 | 1 |
regional part of midbrain | 2.67e-08 | 4 |
midbrain | 2.67e-08 | 4 |
presumptive midbrain | 2.67e-08 | 4 |
midbrain neural tube | 2.67e-08 | 4 |