FFCP PHASE1:Mm9::chr17:34726777..34726858,+: Difference between revisions
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{{FFCP|EntrezGene=106512|HGNC=|MCL_coexpression_id=3|UniProt=Q3U1Z5,O35443,Q0VGT5|association_with_transcript=26bp_to_ENSMUST00000038244,ENSMUST00000038325,NM_134116,uc008ccu.2,uc012aqd.1_5end|description=CAGE_peak_3_at_Gpsm3_5end|id=chr17:34726777..34726858,+|ontology_enrichment_celltype=CL:0000988!6.17e-09!32;CL:0002032!6.17e-09!32;CL:0000037!6.17e-09!32;CL:0000566!6.17e-09!32;CL:0000837!6.17e-09!32;CL:0000738!2.75e-08!17;CL:0002087!2.75e-08!17;CL:0000542!6.44e-07!13;CL:0000051!6.44e-07!13;CL:0002031!6.48e-07!25;CL:0000838!8.73e-07!12|ontology_enrichment_celltype_v019_2=CL:0000988,1.68e-12,32;CL:0002032,1.68e-12,32;CL:0000037,1.68e-12,32;CL:0000837,1.68e-12,32;CL:0000738,1.10e-10,17;CL:0002087,1.10e-10,17;CL:0002031,9.81e-10,25;CL:0000542,7.86e-09,13;CL:0000051,7.86e-09,13;CL:0000838,1.19e-08,12;CL:0002320,1.77e-08,46;CL:0000134,1.77e-08,46;CL:0000084,4.63e-08,11;CL:0000827,4.63e-08,11;CL:0000791,8.51e-07,9;CL:0000789,8.51e-07,9;CL:0002420,8.51e-07,9;CL:0002419,8.51e-07,9;CL:0000790,8.51e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!8.91e-19!48;UBERON:0002390!4.62e-18!45;UBERON:0003061!4.62e-18!45;UBERON:0002405!1.41e-15!70;UBERON:0004177!3.62e-12!29;UBERON:0000926!2.51e-10!193;UBERON:0004120!2.51e-10!193;UBERON:0006603!2.51e-10!193;UBERON:0003081!1.96e-09!88;UBERON:0003408!2.00e-09!24;UBERON:0002370!2.45e-09!23;UBERON:0000974!2.45e-09!23;UBERON:0004807!2.45e-09!23;UBERON:0005058!2.45e-09!23;UBERON:0003351!2.45e-09!23;UBERON:0009113!2.45e-09!23;UBERON:0003295!2.45e-09!23;UBERON:0009722!2.45e-09!23;UBERON:0005562!2.45e-09!23;UBERON:0007690!2.45e-09!23;UBERON:0005057!3.81e-09!51;UBERON:0001004!2.49e-08!42;UBERON:0006562!2.49e-08!24;UBERON:0001557!2.49e-08!24;UBERON:0001042!2.49e-08!24;UBERON:0008814!2.49e-08!24;UBERON:0009145!2.49e-08!24;UBERON:0000065!3.45e-08!41;UBERON:0003104!5.19e-07!131;UBERON:0009142!5.19e-07!131;UBERON:0001474!6.05e-07!22;UBERON:0004765!6.05e-07!22;UBERON:0001434!6.05e-07!22;UBERON:0002371!9.75e-07!16|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.73e-25,48;UBERON:0002405,1.73e-25,48;UBERON:0002390,1.60e-24,45;UBERON:0003061,1.60e-24,45;UBERON:0004177,3.88e-17,29;UBERON:0005057,3.88e-17,29;UBERON:0003408,2.34e-13,24;UBERON:0002370,2.96e-13,23;UBERON:0000974,2.96e-13,23;UBERON:0004807,2.96e-13,23;UBERON:0005058,2.96e-13,23;UBERON:0003351,2.96e-13,23;UBERON:0009113,2.96e-13,23;UBERON:0003295,2.96e-13,23;UBERON:0009722,2.96e-13,23;UBERON:0005562,2.96e-13,23;UBERON:0007690,2.96e-13,23;UBERON:0001004,7.04e-13,42;UBERON:0000065,1.09e-12,41;UBERON:0006562,2.41e-12,24;UBERON:0001557,2.41e-12,24;UBERON:0001042,2.41e-12,24;UBERON:0008814,2.41e-12,24;UBERON:0009145,2.41e-12,24;UBERON:0000077,2.68e-12,35;UBERON:0001041,5.03e-11,80;UBERON:0003081,1.17e-10,87;UBERON:0000072,4.75e-10,27;UBERON:0005911,2.85e-09,69;UBERON:0002204,4.10e-09,32;UBERON:0000926,4.77e-09,120;UBERON:0004120,4.77e-09,120;UBERON:0006603,4.77e-09,120;UBERON:0001474,8.42e-09,22;UBERON:0004765,8.42e-09,22;UBERON:0001434,8.42e-09,22;UBERON:0002384,1.77e-08,46;UBERON:0002371,4.99e-08,16;UBERON:0001048,3.86e-07,134;UBERON:0000490,9.40e-07,66|phase1_expression=0.320297694209588,0,0,0,0,0,0,57.0725089611767,3.66050677594334,4.21316147379588,1.19852577757853,1.43589886191606,41.9441788331454,58.6590900231473,2.6648780945253,2.02475267389826,0.699561878128147,9.30613387806801,8.22686601634433,4.66828616977833,2.04103896362567,6.65249373045932,7.57479388502913,1.11994695955385,1.14704640533585,0,0,0,0.380046838912748,0.756090389279792,0.443461021310609,0,0,0,0,0,0,351.566569819002,200.021848198093,260.191300754978,375.291689363787,329.910969234929,390.350323837047,0.125896817975577,0.202753862439029,0,2.34717403304412,0,0,0,0,0,6.54352163625172,38.4441935266013,20.8378155468328,1.28629718017973,0.286533439938757,1.03134418455488,0,0,0,0.338844532069132,0,11.6986963246582,8.89979726310277,9.2362414942993,4.19440154725767,3.84218305321555,0.414758449233911,0,0,0.285650984403804,0,0.122490799214954,0.0958454710182364,0,0,0.383062014255563,0.46081959976873,0.263772575460388,0.182975287204819,0.52091337055676,0.279182999001381,0,0.30559649555362,0.589257170947335,0,0.372798891650601,0.605809546665472,0.68014404096107,0.579728977403356,0,0,0,0,0,4.63466586434781,0,0.259786004602869,0,0,0,2.54805239706646,0,0,0,0,3.08296475241462,16.8309624370662,0.890652834388949,0.520455980298408,0,0.922461989024234,0.60289056221049,0,0.376999773989026,1.97755974187499,0.86759614151947,52.1920225650426,1.45590164952668,7.06692859073259,9.21262980956922,0,0,0.209446706813455,1.27728527604296,3.35482348616577,3.59941638596045,3.17675567682662,0.748953197024114,0,0,0,0.255715457330331,0,0,0.407357455401265,8.70848794270651,0.252722758433675,0.420883711772948,0.260240885925407,0.919608417733892,0.360124259610698,0.30140963567143,0.544291993210623,0.384341160854549,0.655912071918102,0.258703370739016,0.646703978798527,0.378212160335639,0,0.657587197282725,0.278047249225598,0,0.205782136407943,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:106512 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3U1Z5,uniprot:O35443,uniprot:Q0VGT5 | |||
|association_with_transcript=26bp_to_ENSMUST00000038244,ENSMUST00000038325,NM_134116,uc008ccu.2,uc012aqd.1_5end | |||
|cluster_id=chr17:34726777..34726858,+ | |||
|description=CAGE_peak_3_at_Gpsm3_5end | |||
|id=chr17:34726777..34726858,+ | |||
|ontology_enrichment_celltype=CL:0000988!6.17e-09!32;CL:0002032!6.17e-09!32;CL:0000037!6.17e-09!32;CL:0000566!6.17e-09!32;CL:0000837!6.17e-09!32;CL:0000738!2.75e-08!17;CL:0002087!2.75e-08!17;CL:0000542!6.44e-07!13;CL:0000051!6.44e-07!13;CL:0002031!6.48e-07!25;CL:0000838!8.73e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.68e-12,32;CL:0002032,1.68e-12,32;CL:0000037,1.68e-12,32;CL:0000837,1.68e-12,32;CL:0000738,1.10e-10,17;CL:0002087,1.10e-10,17;CL:0002031,9.81e-10,25;CL:0000542,7.86e-09,13;CL:0000051,7.86e-09,13;CL:0000838,1.19e-08,12;CL:0002320,1.77e-08,46;CL:0000134,1.77e-08,46;CL:0000084,4.63e-08,11;CL:0000827,4.63e-08,11;CL:0000791,8.51e-07,9;CL:0000789,8.51e-07,9;CL:0002420,8.51e-07,9;CL:0002419,8.51e-07,9;CL:0000790,8.51e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.91e-19!48;UBERON:0002390!4.62e-18!45;UBERON:0003061!4.62e-18!45;UBERON:0002405!1.41e-15!70;UBERON:0004177!3.62e-12!29;UBERON:0000926!2.51e-10!193;UBERON:0004120!2.51e-10!193;UBERON:0006603!2.51e-10!193;UBERON:0003081!1.96e-09!88;UBERON:0003408!2.00e-09!24;UBERON:0002370!2.45e-09!23;UBERON:0000974!2.45e-09!23;UBERON:0004807!2.45e-09!23;UBERON:0005058!2.45e-09!23;UBERON:0003351!2.45e-09!23;UBERON:0009113!2.45e-09!23;UBERON:0003295!2.45e-09!23;UBERON:0009722!2.45e-09!23;UBERON:0005562!2.45e-09!23;UBERON:0007690!2.45e-09!23;UBERON:0005057!3.81e-09!51;UBERON:0001004!2.49e-08!42;UBERON:0006562!2.49e-08!24;UBERON:0001557!2.49e-08!24;UBERON:0001042!2.49e-08!24;UBERON:0008814!2.49e-08!24;UBERON:0009145!2.49e-08!24;UBERON:0000065!3.45e-08!41;UBERON:0003104!5.19e-07!131;UBERON:0009142!5.19e-07!131;UBERON:0001474!6.05e-07!22;UBERON:0004765!6.05e-07!22;UBERON:0001434!6.05e-07!22;UBERON:0002371!9.75e-07!16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.73e-25,48;UBERON:0002405,1.73e-25,48;UBERON:0002390,1.60e-24,45;UBERON:0003061,1.60e-24,45;UBERON:0004177,3.88e-17,29;UBERON:0005057,3.88e-17,29;UBERON:0003408,2.34e-13,24;UBERON:0002370,2.96e-13,23;UBERON:0000974,2.96e-13,23;UBERON:0004807,2.96e-13,23;UBERON:0005058,2.96e-13,23;UBERON:0003351,2.96e-13,23;UBERON:0009113,2.96e-13,23;UBERON:0003295,2.96e-13,23;UBERON:0009722,2.96e-13,23;UBERON:0005562,2.96e-13,23;UBERON:0007690,2.96e-13,23;UBERON:0001004,7.04e-13,42;UBERON:0000065,1.09e-12,41;UBERON:0006562,2.41e-12,24;UBERON:0001557,2.41e-12,24;UBERON:0001042,2.41e-12,24;UBERON:0008814,2.41e-12,24;UBERON:0009145,2.41e-12,24;UBERON:0000077,2.68e-12,35;UBERON:0001041,5.03e-11,80;UBERON:0003081,1.17e-10,87;UBERON:0000072,4.75e-10,27;UBERON:0005911,2.85e-09,69;UBERON:0002204,4.10e-09,32;UBERON:0000926,4.77e-09,120;UBERON:0004120,4.77e-09,120;UBERON:0006603,4.77e-09,120;UBERON:0001474,8.42e-09,22;UBERON:0004765,8.42e-09,22;UBERON:0001434,8.42e-09,22;UBERON:0002384,1.77e-08,46;UBERON:0002371,4.99e-08,16;UBERON:0001048,3.86e-07,134;UBERON:0000490,9.40e-07,66 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,57.0725089611767,3.66050677594334,4.21316147379588,1.19852577757853,1.43589886191606,41.9441788331454,58.6590900231473,2.6648780945253,2.02475267389826,0.699561878128147,9.30613387806801,8.22686601634433,4.66828616977833,2.04103896362567,6.65249373045932,7.57479388502913,1.11994695955385,1.14704640533585,0,0,0,0.380046838912748,0.756090389279792,0.443461021310609,0,0,0,0,0,0,351.566569819002,200.021848198093,260.191300754978,375.291689363787,329.910969234929,390.350323837047,0.125896817975577,0.202753862439029,0,2.34717403304412,0,0,0,0,0,6.54352163625172,38.4441935266013,20.8378155468328,1.28629718017973,0.286533439938757,1.03134418455488,0,0,0,0.338844532069132,0,11.6986963246582,8.89979726310277,9.2362414942993,4.19440154725767,3.84218305321555,0.414758449233911,0,0,0.285650984403804,0,0.122490799214954,0.0958454710182364,0,0,0.383062014255563,0.46081959976873,0.263772575460388,0.182975287204819,0.52091337055676,0.279182999001381,0,0.30559649555362,0.589257170947335,0,0.372798891650601,0.605809546665472,0.68014404096107,0.579728977403356,0,0,0,0,0,4.63466586434781,0,0.259786004602869,0,0,0,2.54805239706646,0,0,0,0,3.08296475241462,16.8309624370662,0.890652834388949,0.520455980298408,0,0.922461989024234,0.60289056221049,0,0.376999773989026,1.97755974187499,0.86759614151947,52.1920225650426,1.45590164952668,7.06692859073259,9.21262980956922,0,0,0.209446706813455,1.27728527604296,3.35482348616577,3.59941638596045,3.17675567682662,0.748953197024114,0,0,0,0.255715457330331,0,0,0.407357455401265,8.70848794270651,0.252722758433675,0.420883711772948,0.260240885925407,0.919608417733892,0.360124259610698,0.30140963567143,0.544291993210623,0.384341160854549,0.655912071918102,0.258703370739016,0.646703978798527,0.378212160335639,0,0.657587197282725,0.278047249225598,0,0.205782136407943,1.19420560091096,1.40442637462647,2.83082697826187,3.12579849335152,0.207125772535502,0.469052119962192,0.540186184383045,0.473489471170421,0.590292695242212,0.154267112887378,0.465067889500816,0,0.233530684734339,0.16455984991348,0.656669856316381,0.243206428637567,0.584799949701329,0,0.134206418760372,0,0.102904612379284,2.31293148088659,1.32225283331772,1.49301775374664,0.232236671860439,0.515469845288373,0.80673409849337,0.444756087689741,0.380451252225118,1.42358718463353,0.658795818896044,1.25667604400135,0.596869416123452,0.779856348476481,0.898819408654221,0,1.1948476395262,1.89667900953082,0.799739588268102,0,1.22190796707189,0.969762435838129,0.98190147846446,1.01178459398812,0.738050739898011,1.41298855057237,0.987177311374404,0,1.00107063429656,0.786235980452812,0.224862112384854,2.23146133527353,3.37648023653384,5.85639459097266,6.61701116136864,6.80967952455149,1.92192989231657,8.62609239164127,2.60498663367952,1.24815069245824,1.01031551178845,0.358794827043824,0.964887042726734,4.61882975416512,0.568474235311454,0.325929952884052,1.18821560042632,1.17345124144251,2.34508760418542,1.6663054862021,1.17080188714679,2.20689201748667,2.43611158613652,4.30527875375215,1.63863314715738,2.07221978239075,2.74833211304872,3.01582567878545,3.26343410291226,1.47529281905711,1.10374698521893,0,0.117211686592203,0,1.26235463602186,0,0,0,0.238968797952552,0,0.283076530788832,0,0.292255857911312,0.395287777946524,0.642642632843614,0.283880170416537,0.712262414669021,0.81443479676788,0.659880491890142,0,0.242780636154981,0.906970670894253,0,0.295301892880773,0.614870295887855,1.29214146584111,0.363533729477506,0.712994756769443,1.26414703174326,0,2.06271086496374,0,0.36012218806262,0.129358683782755,0.214337035031592,0.177340233642274,0.356737635204141,0.822745103010605,0.913394847343798,0.938686832254841,0.42366414172764,0,0.16488625294148,0.322928853391811,0.241251699712623,0.477489376012546,0.492422699235184,1.7488850197791,0.556275906031529,11.7900907750518,6.60437977482312,11.1116716421827,5.46268525313604,4.64760374251486,5.49067615695654,5.94924504978494,7.13752406850656,7.46279858543889,0,0.474503990371703,0.609958401380546,0.540026704109006,0.209088296014469,0.218362563746178,0.404593039154462,0.826534557253359,0.523511883968059,0.518459893167171,1.24267862617385,0,0.747582730219894,1.15820943319968,2.72231663681667,1.54991788173277,1.01373675294467,0.58678619322877,2.8644964665669,3.14578033277133,0.483168241652012,0.288030006257865,27.4929674946515,3.85177909051312,6.47079030138412,10.783428307157,17.9026695667481,26.0272574763457,21.9957672621543,29.0948368533917,23.929048637711,21.871353509985,27.9288532829048,26.8009172034319,33.9627800990363,31.9073942955683,0,0.665957860122194,1.34570784914214,0.839423081820392,0.579568782096571,1.87682475451182,1.46521299413812,0.857473516316263,0.501572104035363,0,0,0,0.343706364687375,0,0,0,0,0,0,0.415149390336707,0.399024873401031,0.170733605754134,0,0.838452650511929,0.919217542250071,0.888986911206461,0.206035057238894,0.320919209591815,0.505394423527595,1.01391719956096,1.13175804831646,0.468207537349412,0.768301828858431,1.4933221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| |||
|short_description=p3@Gpsm3 | |||
}} |
Revision as of 17:29, 4 August 2015
Short description: | p3@Gpsm3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gpsm3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 26bp_to_ENSMUST00000038244, ENSMUST00000038325, NM_134116, uc008ccu.2, uc012aqd.1_5end |
EntrezGene: | 106512 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.68e-12 | 32 |
hematopoietic oligopotent progenitor cell | 1.68e-12 | 32 |
hematopoietic stem cell | 1.68e-12 | 32 |
hematopoietic multipotent progenitor cell | 1.68e-12 | 32 |
leukocyte | 1.10e-10 | 17 |
nongranular leukocyte | 1.10e-10 | 17 |
hematopoietic lineage restricted progenitor cell | 9.81e-10 | 25 |
lymphocyte | 7.86e-09 | 13 |
common lymphoid progenitor | 7.86e-09 | 13 |
lymphoid lineage restricted progenitor cell | 1.19e-08 | 12 |
connective tissue cell | 1.77e-08 | 46 |
mesenchymal cell | 1.77e-08 | 46 |
T cell | 4.63e-08 | 11 |
pro-T cell | 4.63e-08 | 11 |
mature alpha-beta T cell | 8.51e-07 | 9 |
alpha-beta T cell | 8.51e-07 | 9 |
immature T cell | 8.51e-07 | 9 |
mature T cell | 8.51e-07 | 9 |
immature alpha-beta T cell | 8.51e-07 | 9 |