FFCP PHASE1:Mm9::chr6:119798111..119798131,-: Difference between revisions
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{{FFCP|EntrezGene=111173|HGNC=|MCL_coexpression_id=30|UniProt=Q99MI1,F8VPM7|association_with_transcript=36bp_to_ENSMUST00000079582,NM_053204,NM_178085,uc009dmk.1,uc009dml.1,uc009dmm.1,uc009dmn.1_5end|description=CAGE_peak_2_at_Erc1_5end|id=chr6:119798111..119798131,-|ontology_enrichment_celltype=CL:0000540!2.61e-08!33;CL:0000047!2.61e-08!33;CL:0000031!2.61e-08!33;CL:0000404!2.61e-08!33;CL:0000117!7.88e-08!23;CL:0000337!7.88e-08!23;CL:0002321!1.05e-07!70;CL:0000220!1.05e-07!70;CL:0000393!6.64e-07!39;CL:0000211!6.64e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.23e-08,33;CL:0000047,2.23e-08,33;CL:0000031,2.23e-08,33;CL:0000404,2.23e-08,33;CL:0000117,6.79e-08,23;CL:0000337,6.79e-08,23;CL:0002321,1.33e-07,70;CL:0000393,7.13e-07,39;CL:0000211,7.13e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.78e-15!75;UBERON:0001016!6.78e-15!75;UBERON:0001017!8.62e-15!73;UBERON:0005743!8.62e-15!73;UBERON:0004121!3.17e-14!102;UBERON:0000924!3.17e-14!102;UBERON:0006601!3.17e-14!102;UBERON:0001049!1.43e-13!52;UBERON:0005068!1.43e-13!52;UBERON:0006241!1.43e-13!52;UBERON:0007135!1.43e-13!52;UBERON:0002020!4.79e-13!34;UBERON:0002346!5.96e-12!71;UBERON:0003075!5.96e-12!71;UBERON:0007284!5.96e-12!71;UBERON:0000955!7.90e-12!50;UBERON:0006238!7.90e-12!50;UBERON:0002616!1.96e-11!49;UBERON:0003080!8.91e-11!40;UBERON:0002780!1.11e-10!39;UBERON:0001890!1.11e-10!39;UBERON:0006240!1.11e-10!39;UBERON:0002791!2.58e-10!29;UBERON:0003528!2.58e-10!29;UBERON:0001893!2.58e-10!29;UBERON:0003056!3.12e-10!49;UBERON:0000033!4.04e-10!63;UBERON:0000956!1.11e-08!21;UBERON:0001869!1.11e-08!21;UBERON:0000203!1.11e-08!21;UBERON:0002619!1.99e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.75e-15,95;UBERON:0000924,1.75e-15,95;UBERON:0006601,1.75e-15,95;UBERON:0010371,3.93e-15,73;UBERON:0001016,7.90e-15,75;UBERON:0001017,1.01e-14,73;UBERON:0000073,4.67e-14,54;UBERON:0002346,1.23e-13,64;UBERON:0003075,1.23e-13,64;UBERON:0007284,1.23e-13,64;UBERON:0001049,1.44e-13,52;UBERON:0005068,1.44e-13,52;UBERON:0006241,1.44e-13,52;UBERON:0007135,1.44e-13,52;UBERON:0002020,5.12e-13,34;UBERON:0000955,9.19e-12,47;UBERON:0006238,9.19e-12,47;UBERON:0002616,2.30e-11,46;UBERON:0003080,9.52e-11,40;UBERON:0002780,1.19e-10,39;UBERON:0001890,1.19e-10,39;UBERON:0006240,1.19e-10,39;UBERON:0003528,2.89e-10,29;UBERON:0002791,2.89e-10,29;UBERON:0001893,2.89e-10,29;UBERON:0003056,2.89e-10,49;UBERON:0010314,1.92e-09,92;UBERON:0000956,1.31e-08,21;UBERON:0001869,1.31e-08,21;UBERON:0000203,1.31e-08,21;UBERON:0002619,2.42e-07,17|phase1_expression=1.92178616525753,7.67745896806594,10.9199817453489,5.14189159221611,3.50627010962443,4.70061961353291,4.67225281191051,2.1950964985068,6.05391505252167,7.72412936862578,0.513653904676515,0.717949430958028,0.513602189793617,1.04904482902797,0.333109761815663,0.202475267389826,0,0.315462165358238,0.411343300817216,0,3.06155844543851,0.0992909512008853,0,1.27993938234725,0.91763712426868,5.16808767703518,4.73838195774982,3.66301095566011,1.52018735565099,0.756090389279792,1.33038306393183,0,0,0,1.1554064790051,0.664938581433969,2.24586291888606,1.25559489221072,3.1253413780952,0.523523743973798,4.1176204162171,1.36609096991689,1.45653105909346,3.14742044938943,1.72340783073175,2.0190142737785,1.56478268869608,1.30815093828268,0.878744730937887,4.08302788055995,0.699932108126813,4.31257693094915,1.67782606057736,3.62681071005672,1.00828139742739,2.31533492432352,0.85960031981627,1.54701627683233,8.9019242778223,9.52183762689659,10.1413024560989,1.35537812827653,2.66788438833342,0,0,1.4209602298922,0.599200221036809,0.768436610643109,4.66603255388149,4.05017814995072,3.78584930432488,6.28432165688368,6.62605622854841,5.75706756310284,5.75072826109418,2.75765635983006,1.10115880999389,6.12899222808901,3.37934373163736,8.44072241473241,9.5147149346506,5.73004707612436,1.95428099300967,2.25105044012672,2.59757021220577,8.54422897873636,9.39653093274079,11.5567656411686,2.34751199332871,3.32514864469856,4.05810284182349,2.58127163094416,4.75979933595425,4.85732872474035,3.89865850468601,4.92829575807069,0.421333260395256,1.87473354835864,1.55871602761721,1.7666978725517,4.08445917352373,6.41632387071589,12.7402619853323,14.2213340630666,1.5154372870785,0.253359865475099,1.01104889002957,3.08296475241462,1.8125651855302,1.7813056687779,2.4287945747259,1.82679286987285,1.84492397804847,1.50722640552623,2.23418543557839,1.25666591329675,3.46072954828123,1.44599356919912,0,2.91180329905337,0.883366073841574,3.39412677194655,0,34.8409148443741,47.9632958602812,0.510914110417183,0.958520996047362,0.599902730993408,0.381210681219194,3.14560342750128,4.11750542536764,8.54449594367478,6.77914848749878,7.92717917724025,5.194701113989,7.62533936418461,1.2220723662038,2.36373244159177,0.758168275301024,0.420883711772948,2.34216797332867,2.29902104433473,3.24111833649629,2.10986744970001,4.01415344992834,3.33095672740609,4.2165776051878,2.32833033665114,2.15567992932842,3.40390944302075,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:111173 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q99MI1,uniprot:F8VPM7 | |||
|association_with_transcript=36bp_to_ENSMUST00000079582,NM_053204,NM_178085,uc009dmk.1,uc009dml.1,uc009dmm.1,uc009dmn.1_5end | |||
|cluster_id=chr6:119798111..119798131,- | |||
|description=CAGE_peak_2_at_Erc1_5end | |||
|id=chr6:119798111..119798131,- | |||
|ontology_enrichment_celltype=CL:0000540!2.61e-08!33;CL:0000047!2.61e-08!33;CL:0000031!2.61e-08!33;CL:0000404!2.61e-08!33;CL:0000117!7.88e-08!23;CL:0000337!7.88e-08!23;CL:0002321!1.05e-07!70;CL:0000220!1.05e-07!70;CL:0000393!6.64e-07!39;CL:0000211!6.64e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.23e-08,33;CL:0000047,2.23e-08,33;CL:0000031,2.23e-08,33;CL:0000404,2.23e-08,33;CL:0000117,6.79e-08,23;CL:0000337,6.79e-08,23;CL:0002321,1.33e-07,70;CL:0000393,7.13e-07,39;CL:0000211,7.13e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.78e-15!75;UBERON:0001016!6.78e-15!75;UBERON:0001017!8.62e-15!73;UBERON:0005743!8.62e-15!73;UBERON:0004121!3.17e-14!102;UBERON:0000924!3.17e-14!102;UBERON:0006601!3.17e-14!102;UBERON:0001049!1.43e-13!52;UBERON:0005068!1.43e-13!52;UBERON:0006241!1.43e-13!52;UBERON:0007135!1.43e-13!52;UBERON:0002020!4.79e-13!34;UBERON:0002346!5.96e-12!71;UBERON:0003075!5.96e-12!71;UBERON:0007284!5.96e-12!71;UBERON:0000955!7.90e-12!50;UBERON:0006238!7.90e-12!50;UBERON:0002616!1.96e-11!49;UBERON:0003080!8.91e-11!40;UBERON:0002780!1.11e-10!39;UBERON:0001890!1.11e-10!39;UBERON:0006240!1.11e-10!39;UBERON:0002791!2.58e-10!29;UBERON:0003528!2.58e-10!29;UBERON:0001893!2.58e-10!29;UBERON:0003056!3.12e-10!49;UBERON:0000033!4.04e-10!63;UBERON:0000956!1.11e-08!21;UBERON:0001869!1.11e-08!21;UBERON:0000203!1.11e-08!21;UBERON:0002619!1.99e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.75e-15,95;UBERON:0000924,1.75e-15,95;UBERON:0006601,1.75e-15,95;UBERON:0010371,3.93e-15,73;UBERON:0001016,7.90e-15,75;UBERON:0001017,1.01e-14,73;UBERON:0000073,4.67e-14,54;UBERON:0002346,1.23e-13,64;UBERON:0003075,1.23e-13,64;UBERON:0007284,1.23e-13,64;UBERON:0001049,1.44e-13,52;UBERON:0005068,1.44e-13,52;UBERON:0006241,1.44e-13,52;UBERON:0007135,1.44e-13,52;UBERON:0002020,5.12e-13,34;UBERON:0000955,9.19e-12,47;UBERON:0006238,9.19e-12,47;UBERON:0002616,2.30e-11,46;UBERON:0003080,9.52e-11,40;UBERON:0002780,1.19e-10,39;UBERON:0001890,1.19e-10,39;UBERON:0006240,1.19e-10,39;UBERON:0003528,2.89e-10,29;UBERON:0002791,2.89e-10,29;UBERON:0001893,2.89e-10,29;UBERON:0003056,2.89e-10,49;UBERON:0010314,1.92e-09,92;UBERON:0000956,1.31e-08,21;UBERON:0001869,1.31e-08,21;UBERON:0000203,1.31e-08,21;UBERON:0002619,2.42e-07,17 | |||
|phase1_expression=1.92178616525753,7.67745896806594,10.9199817453489,5.14189159221611,3.50627010962443,4.70061961353291,4.67225281191051,2.1950964985068,6.05391505252167,7.72412936862578,0.513653904676515,0.717949430958028,0.513602189793617,1.04904482902797,0.333109761815663,0.202475267389826,0,0.315462165358238,0.411343300817216,0,3.06155844543851,0.0992909512008853,0,1.27993938234725,0.91763712426868,5.16808767703518,4.73838195774982,3.66301095566011,1.52018735565099,0.756090389279792,1.33038306393183,0,0,0,1.1554064790051,0.664938581433969,2.24586291888606,1.25559489221072,3.1253413780952,0.523523743973798,4.1176204162171,1.36609096991689,1.45653105909346,3.14742044938943,1.72340783073175,2.0190142737785,1.56478268869608,1.30815093828268,0.878744730937887,4.08302788055995,0.699932108126813,4.31257693094915,1.67782606057736,3.62681071005672,1.00828139742739,2.31533492432352,0.85960031981627,1.54701627683233,8.9019242778223,9.52183762689659,10.1413024560989,1.35537812827653,2.66788438833342,0,0,1.4209602298922,0.599200221036809,0.768436610643109,4.66603255388149,4.05017814995072,3.78584930432488,6.28432165688368,6.62605622854841,5.75706756310284,5.75072826109418,2.75765635983006,1.10115880999389,6.12899222808901,3.37934373163736,8.44072241473241,9.5147149346506,5.73004707612436,1.95428099300967,2.25105044012672,2.59757021220577,8.54422897873636,9.39653093274079,11.5567656411686,2.34751199332871,3.32514864469856,4.05810284182349,2.58127163094416,4.75979933595425,4.85732872474035,3.89865850468601,4.92829575807069,0.421333260395256,1.87473354835864,1.55871602761721,1.7666978725517,4.08445917352373,6.41632387071589,12.7402619853323,14.2213340630666,1.5154372870785,0.253359865475099,1.01104889002957,3.08296475241462,1.8125651855302,1.7813056687779,2.4287945747259,1.82679286987285,1.84492397804847,1.50722640552623,2.23418543557839,1.25666591329675,3.46072954828123,1.44599356919912,0,2.91180329905337,0.883366073841574,3.39412677194655,0,34.8409148443741,47.9632958602812,0.510914110417183,0.958520996047362,0.599902730993408,0.381210681219194,3.14560342750128,4.11750542536764,8.54449594367478,6.77914848749878,7.92717917724025,5.194701113989,7.62533936418461,1.2220723662038,2.36373244159177,0.758168275301024,0.420883711772948,2.34216797332867,2.29902104433473,3.24111833649629,2.10986744970001,4.01415344992834,3.33095672740609,4.2165776051878,2.32833033665114,2.15567992932842,3.40390944302075,1.93546236580344,1.97276159184817,2.22437799380478,2.43776516565517,1.85203922767149,1.59227413454795,0,0.772043721344145,0,1.65700618028402,3.28336483973535,2.52086886045421,0.710234206755631,2.36117078096885,1.07986979021165,1.16266972375204,1.07309360559848,2.45207218971056,2.63295759861569,2.95501435342371,3.16168357228837,4.23979963533464,2.19550115291051,2.41571553768669,7.14985825118033,13.0688857721691,2.31293148088659,0.793351699990633,1.49301775374664,3.0190767341857,1.54640953586512,1.21010114774006,0.667134131534611,0.570676878337677,0,0.658795818896044,1.50801125280162,1.59165177632921,1.75467678407208,0,1.08069024937347,0.995706366271836,1.13800740571849,2.74196430263349,2.25415471346161,2.03651327845314,2.32742984601151,2.66516115583211,3.22506339333712,1.91893192373483,1.72698600625512,2.46794327843601,7.41131567717872,1.00107063429656,0.589676985339609,0.899448449539415,0.811440485554012,0.964708639009667,0.50925170356284,0.575392274901621,0.972811360650212,1.09824565275233,2.87536413054709,4.09355042435354,2.49630138491648,2.02063102357689,5.56131981917928,9.64887042726734,2.40179147216586,1.70542270593436,1.79261474086228,2.71592137240301,2.11221223459652,2.01007508930179,0.952174563544055,1.75620283072019,3.78324345854858,1.99318220683897,2.23236676120482,1.63863314715738,0.863424909329478,1.15719246865209,0,1.08781136763742,0.983528546038072,1.37968373152366,3.69266356971921,3.04750385139728,1.80328439914343,0.757412781613119,2.52406575533005,4.68526493155966,3.23135096599198,1.19484398976276,4.01037613348309,1.98153571552183,4.85772842009873,3.79932615284705,5.92931666919785,5.14114106274891,3.12268187458191,1.24645922567079,1.62886959353576,0.659880491890142,0,2.91336763385978,0,0.754420319023592,1.77181135728464,1.53717573971964,2.06742634534577,1.45413491791002,0.712994756769443,0.632073515871632,1.05418608574999,2.06271086496374,4.76615448055303,3.06103859853227,1.29358683782755,1.71469628025274,3.54680467284547,3.56737635204141,2.30368628842969,2.43571959291679,1.40803024838226,4.44847348814022,1.10264199027481,16.9832840529724,3.55221738730992,7.96130609051657,13.0115854963419,30.6943482523265,1.45740418314925,1.48340241608408,0.341741761595705,1.44470807574256,1.29636169158798,0.188368457004691,0.683471138605126,0.915112692826091,3.0596117398894,3.07893195112048,2.48759952847963,0.954670618015114,2.53068794864908,1.62655573701479,1.40406943068342,1.25452977608681,0.87345025498471,1.88810084938749,1.57041565878138,1.04702376793612,1.16653475962614,0,1.12738587736838,0.747582730219894,0.66183396182839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| |||
|short_description=p2@Erc1 | |||
}} |
Revision as of 00:33, 5 August 2015
Short description: | p2@Erc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Erc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 36bp_to_ENSMUST00000079582, NM_053204, NM_178085, uc009dmk.1, uc009dml.1, uc009dmm.1, uc009dmn.1_5end |
EntrezGene: | 111173 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.23e-08 | 33 |
neuronal stem cell | 2.23e-08 | 33 |
neuroblast | 2.23e-08 | 33 |
electrically signaling cell | 2.23e-08 | 33 |
CNS neuron (sensu Vertebrata) | 6.79e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.79e-08 | 23 |
embryonic cell | 1.33e-07 | 70 |
electrically responsive cell | 7.13e-07 | 39 |
electrically active cell | 7.13e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.75e-15 | 95 |
ectoderm | 1.75e-15 | 95 |
presumptive ectoderm | 1.75e-15 | 95 |
ecto-epithelium | 3.93e-15 | 73 |
nervous system | 7.90e-15 | 75 |
central nervous system | 1.01e-14 | 73 |
regional part of nervous system | 4.67e-14 | 54 |
neurectoderm | 1.23e-13 | 64 |
neural plate | 1.23e-13 | 64 |
presumptive neural plate | 1.23e-13 | 64 |
neural tube | 1.44e-13 | 52 |
neural rod | 1.44e-13 | 52 |
future spinal cord | 1.44e-13 | 52 |
neural keel | 1.44e-13 | 52 |
gray matter | 5.12e-13 | 34 |
brain | 9.19e-12 | 47 |
future brain | 9.19e-12 | 47 |
regional part of brain | 2.30e-11 | 46 |
anterior neural tube | 9.52e-11 | 40 |
regional part of forebrain | 1.19e-10 | 39 |
forebrain | 1.19e-10 | 39 |
future forebrain | 1.19e-10 | 39 |
brain grey matter | 2.89e-10 | 29 |
regional part of telencephalon | 2.89e-10 | 29 |
telencephalon | 2.89e-10 | 29 |
pre-chordal neural plate | 2.89e-10 | 49 |
structure with developmental contribution from neural crest | 1.92e-09 | 92 |
cerebral cortex | 1.31e-08 | 21 |
cerebral hemisphere | 1.31e-08 | 21 |
pallium | 1.31e-08 | 21 |
regional part of cerebral cortex | 2.42e-07 | 17 |