FFCP PHASE1:Mm9::chr7:5003205..5003234,+: Difference between revisions
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{{FFCP|EntrezGene=68992|HGNC=|MCL_coexpression_id=398|UniProt=Q9DB38|association_with_transcript=71bp_to_ENSMUST00000069324,NM_026900,uc009ezp.2_5end|description=CAGE_peak_3_at_Zfp580_5end|id=chr7:5003205..5003234,+|ontology_enrichment_celltype=CL:0000221!3.53e-16!44;CL:0000133!3.53e-16!44;CL:0002319!9.17e-16!43;CL:0000540!2.40e-15!33;CL:0000047!2.40e-15!33;CL:0000031!2.40e-15!33;CL:0000404!2.40e-15!33;CL:0000055!2.39e-13!50;CL:0000393!5.00e-13!39;CL:0000211!5.00e-13!39;CL:0000117!1.33e-10!23;CL:0000337!1.33e-10!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.00e-16,44;CL:0000133,2.00e-16,44;CL:0002319,5.39e-16,43;CL:0000540,6.11e-16,33;CL:0000047,6.11e-16,33;CL:0000031,6.11e-16,33;CL:0000404,6.11e-16,33;CL:0000393,1.60e-13,39;CL:0000211,1.60e-13,39;CL:0000117,5.40e-11,23;CL:0000337,5.40e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.42e-29!73;UBERON:0005743!1.42e-29!73;UBERON:0000073!2.88e-28!75;UBERON:0001016!2.88e-28!75;UBERON:0004121!3.64e-25!102;UBERON:0000924!3.64e-25!102;UBERON:0006601!3.64e-25!102;UBERON:0002346!3.45e-23!71;UBERON:0003075!3.45e-23!71;UBERON:0007284!3.45e-23!71;UBERON:0001049!9.31e-20!52;UBERON:0005068!9.31e-20!52;UBERON:0006241!9.31e-20!52;UBERON:0007135!9.31e-20!52;UBERON:0000033!2.16e-19!63;UBERON:0003056!3.42e-18!49;UBERON:0000955!3.10e-17!50;UBERON:0006238!3.10e-17!50;UBERON:0002616!1.10e-16!49;UBERON:0003080!3.68e-15!40;UBERON:0002780!7.10e-15!39;UBERON:0001890!7.10e-15!39;UBERON:0006240!7.10e-15!39;UBERON:0002020!7.84e-15!34;UBERON:0000153!5.82e-12!94;UBERON:0002791!1.52e-11!29;UBERON:0003528!1.52e-11!29;UBERON:0001893!1.52e-11!29;UBERON:0007811!1.64e-10!86;UBERON:0000956!5.01e-09!21;UBERON:0001869!5.01e-09!21;UBERON:0000203!5.01e-09!21;UBERON:0002619!8.29e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.52e-30,73;UBERON:0001016,5.24e-29,75;UBERON:0004121,6.32e-26,95;UBERON:0000924,6.32e-26,95;UBERON:0006601,6.32e-26,95;UBERON:0002346,7.44e-26,64;UBERON:0003075,7.44e-26,64;UBERON:0007284,7.44e-26,64;UBERON:0010371,1.13e-21,73;UBERON:0000073,6.75e-21,54;UBERON:0001049,1.52e-20,52;UBERON:0005068,1.52e-20,52;UBERON:0006241,1.52e-20,52;UBERON:0007135,1.52e-20,52;UBERON:0003056,6.54e-19,49;UBERON:0000955,2.00e-17,47;UBERON:0006238,2.00e-17,47;UBERON:0010314,4.82e-17,92;UBERON:0002616,7.45e-17,46;UBERON:0003080,9.54e-16,40;UBERON:0002780,1.89e-15,39;UBERON:0001890,1.89e-15,39;UBERON:0006240,1.89e-15,39;UBERON:0002020,2.10e-15,34;UBERON:0003528,5.63e-12,29;UBERON:0002791,5.63e-12,29;UBERON:0001893,5.63e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0002619,4.45e-08,17|phase1_expression=4.32401887182944,0,0,0,0,0,0.233612640595526,0.387369970324729,0.140788722151667,0.70219357896598,0,0.159544317990673,0.513602189793617,0.34968160967599,0,0.202475267389826,0,0,0.137114433605739,0,1.02051948181284,3.47518329203099,2.35079810225042,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76255545165808,1.31790010585369,2.56965453026354,4.69434806608824,4.14247797122848,3.95435128922049,3.11087838518853,0.699932108126813,5.75010257459886,0.503347818173209,0,0.672187598284928,1.02903774414379,1.71920063963254,1.03134418455488,16.7922662513466,21.1596391708813,15.2119536841483,2.03306719241479,1.77858959222228,1.3498495759221,0.988866362566974,0,5.09320187881288,7.30014780110954,3.83651565541367,5.26523159493594,3.57552434297349,14.2825492201902,11.2642955885323,5.14461356702807,3.83381884072945,7.35375029288017,5.50579404996943,2.80912143787413,2.61131106535614,12.7929699098288,11.2529801630964,11.9810075228055,2.51264699101243,2.25105044012672,4.88954392885792,14.4368006882097,11.2473627831291,12.4887628702951,0.605809546665472,1.20914496170857,1.44932244350839,0.860423876981386,0,0,0,0,0.561777680527007,1.70430322578058,1.29893002301434,1.06001872353102,5.21120653173718,0,2.54805239706646,7.11066703153331,0,0,0,0.11418387971906,0.776813650941515,1.03909497345377,2.94925055502431,3.65358573974569,1.61430848079241,1.50722640552623,2.11659672844269,0.628332956648377,0.741584903203122,0.722996784599558,0,1.45590164952668,1.32504911076236,0.484875253135222,0,4.68449275218475,1.8850203613211,0.766371165625774,0.958520996047362,0,0.127070227073065,3.89455662452539,2.74500361691176,9.04711335212624,5.73620256634512,5.8814555185976,3.53239675751252,4.86723789203273,3.7680564624617,0.995255764880744,0.505445516867349,1.05220927943237,5.46505860443356,6.20735681970377,7.74267158163002,4.37043971723574,6.32739442107349,6.14945857367279,5.80950692270319,2.58703370739016,6.03590380211958,4.53854592402766,5.45448484908241,5.47989331068937,2.78047249225598,3.1342694986995,2.05782136407943,3.38358253591438,0,0,0,1.86413195281952,0.938104239924385,1.98068267607116,1.42046841351126,0.983821158737019,2.00547246753592,1.62773761325285,1.60964040839772,1.63471479314037,2.30383789878873,0.985004784474571,0.810688095458557,0.877199924551994,0.658650345873152,1.07365135008297,4.2057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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68992 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DB38 | |||
|association_with_transcript=71bp_to_ENSMUST00000069324,NM_026900,uc009ezp.2_5end | |||
|cluster_id=chr7:5003205..5003234,+ | |||
|description=CAGE_peak_3_at_Zfp580_5end | |||
|id=chr7:5003205..5003234,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.53e-16!44;CL:0000133!3.53e-16!44;CL:0002319!9.17e-16!43;CL:0000540!2.40e-15!33;CL:0000047!2.40e-15!33;CL:0000031!2.40e-15!33;CL:0000404!2.40e-15!33;CL:0000055!2.39e-13!50;CL:0000393!5.00e-13!39;CL:0000211!5.00e-13!39;CL:0000117!1.33e-10!23;CL:0000337!1.33e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.00e-16,44;CL:0000133,2.00e-16,44;CL:0002319,5.39e-16,43;CL:0000540,6.11e-16,33;CL:0000047,6.11e-16,33;CL:0000031,6.11e-16,33;CL:0000404,6.11e-16,33;CL:0000393,1.60e-13,39;CL:0000211,1.60e-13,39;CL:0000117,5.40e-11,23;CL:0000337,5.40e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.42e-29!73;UBERON:0005743!1.42e-29!73;UBERON:0000073!2.88e-28!75;UBERON:0001016!2.88e-28!75;UBERON:0004121!3.64e-25!102;UBERON:0000924!3.64e-25!102;UBERON:0006601!3.64e-25!102;UBERON:0002346!3.45e-23!71;UBERON:0003075!3.45e-23!71;UBERON:0007284!3.45e-23!71;UBERON:0001049!9.31e-20!52;UBERON:0005068!9.31e-20!52;UBERON:0006241!9.31e-20!52;UBERON:0007135!9.31e-20!52;UBERON:0000033!2.16e-19!63;UBERON:0003056!3.42e-18!49;UBERON:0000955!3.10e-17!50;UBERON:0006238!3.10e-17!50;UBERON:0002616!1.10e-16!49;UBERON:0003080!3.68e-15!40;UBERON:0002780!7.10e-15!39;UBERON:0001890!7.10e-15!39;UBERON:0006240!7.10e-15!39;UBERON:0002020!7.84e-15!34;UBERON:0000153!5.82e-12!94;UBERON:0002791!1.52e-11!29;UBERON:0003528!1.52e-11!29;UBERON:0001893!1.52e-11!29;UBERON:0007811!1.64e-10!86;UBERON:0000956!5.01e-09!21;UBERON:0001869!5.01e-09!21;UBERON:0000203!5.01e-09!21;UBERON:0002619!8.29e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.52e-30,73;UBERON:0001016,5.24e-29,75;UBERON:0004121,6.32e-26,95;UBERON:0000924,6.32e-26,95;UBERON:0006601,6.32e-26,95;UBERON:0002346,7.44e-26,64;UBERON:0003075,7.44e-26,64;UBERON:0007284,7.44e-26,64;UBERON:0010371,1.13e-21,73;UBERON:0000073,6.75e-21,54;UBERON:0001049,1.52e-20,52;UBERON:0005068,1.52e-20,52;UBERON:0006241,1.52e-20,52;UBERON:0007135,1.52e-20,52;UBERON:0003056,6.54e-19,49;UBERON:0000955,2.00e-17,47;UBERON:0006238,2.00e-17,47;UBERON:0010314,4.82e-17,92;UBERON:0002616,7.45e-17,46;UBERON:0003080,9.54e-16,40;UBERON:0002780,1.89e-15,39;UBERON:0001890,1.89e-15,39;UBERON:0006240,1.89e-15,39;UBERON:0002020,2.10e-15,34;UBERON:0003528,5.63e-12,29;UBERON:0002791,5.63e-12,29;UBERON:0001893,5.63e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0002619,4.45e-08,17 | |||
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| |||
|short_description=p3@Zfp580 | |||
}} |
Revision as of 05:10, 5 August 2015
Short description: | p3@Zfp580 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Zfp580_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 71bp_to_ENSMUST00000069324, NM_026900, uc009ezp.2_5end |
EntrezGene: | 68992 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.00e-16 | 44 |
neurectodermal cell | 2.00e-16 | 44 |
neural cell | 5.39e-16 | 43 |
neuron | 6.11e-16 | 33 |
neuronal stem cell | 6.11e-16 | 33 |
neuroblast | 6.11e-16 | 33 |
electrically signaling cell | 6.11e-16 | 33 |
electrically responsive cell | 1.60e-13 | 39 |
electrically active cell | 1.60e-13 | 39 |
CNS neuron (sensu Vertebrata) | 5.40e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.40e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.52e-30 | 73 |
nervous system | 5.24e-29 | 75 |
ectoderm-derived structure | 6.32e-26 | 95 |
ectoderm | 6.32e-26 | 95 |
presumptive ectoderm | 6.32e-26 | 95 |
neurectoderm | 7.44e-26 | 64 |
neural plate | 7.44e-26 | 64 |
presumptive neural plate | 7.44e-26 | 64 |
ecto-epithelium | 1.13e-21 | 73 |
regional part of nervous system | 6.75e-21 | 54 |
neural tube | 1.52e-20 | 52 |
neural rod | 1.52e-20 | 52 |
future spinal cord | 1.52e-20 | 52 |
neural keel | 1.52e-20 | 52 |
pre-chordal neural plate | 6.54e-19 | 49 |
brain | 2.00e-17 | 47 |
future brain | 2.00e-17 | 47 |
structure with developmental contribution from neural crest | 4.82e-17 | 92 |
regional part of brain | 7.45e-17 | 46 |
anterior neural tube | 9.54e-16 | 40 |
regional part of forebrain | 1.89e-15 | 39 |
forebrain | 1.89e-15 | 39 |
future forebrain | 1.89e-15 | 39 |
gray matter | 2.10e-15 | 34 |
brain grey matter | 5.63e-12 | 29 |
regional part of telencephalon | 5.63e-12 | 29 |
telencephalon | 5.63e-12 | 29 |
cerebral cortex | 2.39e-09 | 21 |
cerebral hemisphere | 2.39e-09 | 21 |
pallium | 2.39e-09 | 21 |
regional part of cerebral cortex | 4.45e-08 | 17 |