FFCP PHASE1:Mm9::chr3:133899447..133899464,+: Difference between revisions
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{{FFCP|EntrezGene=319478|HGNC=|MCL_coexpression_id=22|UniProt=Q6NXI8|association_with_transcript=0bp_to_NM_001004367,uc008rkv.1_5end|description=CAGE_peak_1_at_Cxxc4_5end|id=chr3:133899447..133899464,+|ontology_enrichment_celltype=CL:0000117!1.29e-12!23;CL:0000337!1.29e-12!23;CL:0000540!4.13e-08!33;CL:0000047!4.13e-08!33;CL:0000031!4.13e-08!33;CL:0000404!4.13e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.36e-13,23;CL:0000337,2.36e-13,23;CL:0000540,3.44e-08,33;CL:0000047,3.44e-08,33;CL:0000031,3.44e-08,33;CL:0000404,3.44e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.74e-24!71;UBERON:0003075!6.74e-24!71;UBERON:0007284!6.74e-24!71;UBERON:0000033!2.42e-21!63;UBERON:0003056!5.29e-21!49;UBERON:0001049!1.72e-20!52;UBERON:0005068!1.72e-20!52;UBERON:0006241!1.72e-20!52;UBERON:0007135!1.72e-20!52;UBERON:0004121!1.99e-19!102;UBERON:0000924!1.99e-19!102;UBERON:0006601!1.99e-19!102;UBERON:0000955!1.01e-18!50;UBERON:0006238!1.01e-18!50;UBERON:0002616!3.00e-18!49;UBERON:0001017!5.36e-18!73;UBERON:0005743!5.36e-18!73;UBERON:0003080!4.94e-17!40;UBERON:0000073!9.82e-17!75;UBERON:0001016!9.82e-17!75;UBERON:0002780!1.84e-16!39;UBERON:0001890!1.84e-16!39;UBERON:0006240!1.84e-16!39;UBERON:0002020!3.62e-15!34;UBERON:0002791!3.46e-12!29;UBERON:0003528!3.46e-12!29;UBERON:0001893!3.46e-12!29;UBERON:0000153!1.08e-09!94;UBERON:0000468!2.46e-09!333;UBERON:0007811!8.07e-09!86;UBERON:0000956!2.73e-08!21;UBERON:0001869!2.73e-08!21;UBERON:0000203!2.73e-08!21;UBERON:0000922!5.92e-08!328;UBERON:0002619!2.11e-07!17;UBERON:0002021!6.14e-07!10;UBERON:0000411!6.14e-07!10;UBERON:0001950!6.14e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.97e-25,64;UBERON:0003075,7.97e-25,64;UBERON:0007284,7.97e-25,64;UBERON:0010371,1.19e-22,73;UBERON:0000073,5.95e-22,54;UBERON:0003056,6.14e-22,49;UBERON:0001049,5.60e-21,52;UBERON:0005068,5.60e-21,52;UBERON:0006241,5.60e-21,52;UBERON:0007135,5.60e-21,52;UBERON:0004121,4.50e-19,95;UBERON:0000924,4.50e-19,95;UBERON:0006601,4.50e-19,95;UBERON:0001017,6.01e-18,73;UBERON:0000955,6.95e-18,47;UBERON:0006238,6.95e-18,47;UBERON:0003080,1.04e-17,40;UBERON:0002616,2.17e-17,46;UBERON:0010314,2.27e-17,92;UBERON:0002780,4.19e-17,39;UBERON:0001890,4.19e-17,39;UBERON:0006240,4.19e-17,39;UBERON:0001016,1.20e-16,75;UBERON:0002020,1.02e-15,34;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0000956,2.00e-08,21;UBERON:0001869,2.00e-08,21;UBERON:0000203,2.00e-08,21;UBERON:0002619,1.81e-07,17;UBERON:0002021,2.67e-07,10;UBERON:0000411,2.67e-07,10;UBERON:0001950,2.67e-07,10|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,2.18243053485457,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,1.27993938234725,0.91763712426868,0.57423196411502,0,0.430942465371778,0.950117097281869,0.756090389279792,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0.782391344348039,2.39827672018491,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0.515672092277442,72.0246600660168,58.7179986991957,67.8199601751612,1.69422266034566,1.77858959222228,0,0,0,0.299600110518405,2.30530983192933,7.15458324928496,6.48028503992115,7.36137364729837,17.1390590642282,18.3320888989839,22.1708346579067,28.5619503634344,26.6573448116906,7.70811166995721,12.3856717942632,13.9781945263182,76.7578194589728,84.9005332630362,80.7415724362978,8.93385596804419,12.380777420697,14.2102370432433,30.0521157183141,33.0302299453919,44.5494675522468,0.227178579999552,0,2.89864488701678,0,0,0,0,0,0.561777680527007,0,0,0,1.26759077799012,0,0,0,0,0.760079596425296,0,0.45673551887624,1.55362730188303,3.56261133755579,5.72501578328248,4.87144765299426,4.84292544237723,4.06951129492081,4.8211369925639,1.13099932196708,0,0.289198713839823,0,1.13236794963186,0,0,0,8.49064311333487,3.35114730901528,0.510914110417183,0,0,0,19.6225737620318,11.4375150704657,16.712028831011,12.5153510538439,11.7629110371952,16.2074674756457,12.1680947300818,18.4329248569072,1.49288364732112,0,12.6265113531884,6.76626303406059,5.28774840196988,12.0641626969584,18.9888070473001,21.0232782377603,23.4448108121275,20.2395725049014,16.039608985819,12.7185115830377,8.88798576788751,9.50136070485324,3.5071317188412,5.00485048606076,3.1342694986995,1.02891068203972,4.37875387000685,0,0,0,4.76389276831654,5.15957331958412,5.04173772090842,4.97163944728941,3.93528463494808,5.09081472528348,2.32533944750408,2.14618721119695,1.98501082024188,1.15191894939436,0.656669856316381,0.486412857275134,0.584799949701329,0.439100230582101,0.536825675041487,6.51898840548794,9.36431972651488,0.660837565967596,1.05780226665418,11.7308537794379,4.87697010906921,4.51036114627327,3.83198696784351,3.55804870151792,2.85338439168839,0.949058123089023,1.31759163779209,1.75934646160189,1.39269530428806,1.36474860983384,0,1.08069024937347,0.199141273254367,6.06937283049861,5.36968009265725,5.63538678365402,2.8511185898344,3.10323979468201,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:319478 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6NXI8 | |||
|association_with_transcript=0bp_to_NM_001004367,uc008rkv.1_5end | |||
|cluster_id=chr3:133899447..133899464,+ | |||
|description=CAGE_peak_1_at_Cxxc4_5end | |||
|id=chr3:133899447..133899464,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.29e-12!23;CL:0000337!1.29e-12!23;CL:0000540!4.13e-08!33;CL:0000047!4.13e-08!33;CL:0000031!4.13e-08!33;CL:0000404!4.13e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.36e-13,23;CL:0000337,2.36e-13,23;CL:0000540,3.44e-08,33;CL:0000047,3.44e-08,33;CL:0000031,3.44e-08,33;CL:0000404,3.44e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.74e-24!71;UBERON:0003075!6.74e-24!71;UBERON:0007284!6.74e-24!71;UBERON:0000033!2.42e-21!63;UBERON:0003056!5.29e-21!49;UBERON:0001049!1.72e-20!52;UBERON:0005068!1.72e-20!52;UBERON:0006241!1.72e-20!52;UBERON:0007135!1.72e-20!52;UBERON:0004121!1.99e-19!102;UBERON:0000924!1.99e-19!102;UBERON:0006601!1.99e-19!102;UBERON:0000955!1.01e-18!50;UBERON:0006238!1.01e-18!50;UBERON:0002616!3.00e-18!49;UBERON:0001017!5.36e-18!73;UBERON:0005743!5.36e-18!73;UBERON:0003080!4.94e-17!40;UBERON:0000073!9.82e-17!75;UBERON:0001016!9.82e-17!75;UBERON:0002780!1.84e-16!39;UBERON:0001890!1.84e-16!39;UBERON:0006240!1.84e-16!39;UBERON:0002020!3.62e-15!34;UBERON:0002791!3.46e-12!29;UBERON:0003528!3.46e-12!29;UBERON:0001893!3.46e-12!29;UBERON:0000153!1.08e-09!94;UBERON:0000468!2.46e-09!333;UBERON:0007811!8.07e-09!86;UBERON:0000956!2.73e-08!21;UBERON:0001869!2.73e-08!21;UBERON:0000203!2.73e-08!21;UBERON:0000922!5.92e-08!328;UBERON:0002619!2.11e-07!17;UBERON:0002021!6.14e-07!10;UBERON:0000411!6.14e-07!10;UBERON:0001950!6.14e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.97e-25,64;UBERON:0003075,7.97e-25,64;UBERON:0007284,7.97e-25,64;UBERON:0010371,1.19e-22,73;UBERON:0000073,5.95e-22,54;UBERON:0003056,6.14e-22,49;UBERON:0001049,5.60e-21,52;UBERON:0005068,5.60e-21,52;UBERON:0006241,5.60e-21,52;UBERON:0007135,5.60e-21,52;UBERON:0004121,4.50e-19,95;UBERON:0000924,4.50e-19,95;UBERON:0006601,4.50e-19,95;UBERON:0001017,6.01e-18,73;UBERON:0000955,6.95e-18,47;UBERON:0006238,6.95e-18,47;UBERON:0003080,1.04e-17,40;UBERON:0002616,2.17e-17,46;UBERON:0010314,2.27e-17,92;UBERON:0002780,4.19e-17,39;UBERON:0001890,4.19e-17,39;UBERON:0006240,4.19e-17,39;UBERON:0001016,1.20e-16,75;UBERON:0002020,1.02e-15,34;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0000956,2.00e-08,21;UBERON:0001869,2.00e-08,21;UBERON:0000203,2.00e-08,21;UBERON:0002619,1.81e-07,17;UBERON:0002021,2.67e-07,10;UBERON:0000411,2.67e-07,10;UBERON:0001950,2.67e-07,10 | |||
|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,2.18243053485457,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,1.27993938234725,0.91763712426868,0.57423196411502,0,0.430942465371778,0.950117097281869,0.756090389279792,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0.782391344348039,2.39827672018491,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0.515672092277442,72.0246600660168,58.7179986991957,67.8199601751612,1.69422266034566,1.77858959222228,0,0,0,0.299600110518405,2.30530983192933,7.15458324928496,6.48028503992115,7.36137364729837,17.1390590642282,18.3320888989839,22.1708346579067,28.5619503634344,26.6573448116906,7.70811166995721,12.3856717942632,13.9781945263182,76.7578194589728,84.9005332630362,80.7415724362978,8.93385596804419,12.380777420697,14.2102370432433,30.0521157183141,33.0302299453919,44.5494675522468,0.227178579999552,0,2.89864488701678,0,0,0,0,0,0.561777680527007,0,0,0,1.26759077799012,0,0,0,0,0.760079596425296,0,0.45673551887624,1.55362730188303,3.56261133755579,5.72501578328248,4.87144765299426,4.84292544237723,4.06951129492081,4.8211369925639,1.13099932196708,0,0.289198713839823,0,1.13236794963186,0,0,0,8.49064311333487,3.35114730901528,0.510914110417183,0,0,0,19.6225737620318,11.4375150704657,16.712028831011,12.5153510538439,11.7629110371952,16.2074674756457,12.1680947300818,18.4329248569072,1.49288364732112,0,12.6265113531884,6.76626303406059,5.28774840196988,12.0641626969584,18.9888070473001,21.0232782377603,23.4448108121275,20.2395725049014,16.039608985819,12.7185115830377,8.88798576788751,9.50136070485324,3.5071317188412,5.00485048606076,3.1342694986995,1.02891068203972,4.37875387000685,0,0,0,4.76389276831654,5.15957331958412,5.04173772090842,4.97163944728941,3.93528463494808,5.09081472528348,2.32533944750408,2.14618721119695,1.98501082024188,1.15191894939436,0.656669856316381,0.486412857275134,0.584799949701329,0.439100230582101,0.536825675041487,6.51898840548794,9.36431972651488,0.660837565967596,1.05780226665418,11.7308537794379,4.87697010906921,4.51036114627327,3.83198696784351,3.55804870151792,2.85338439168839,0.949058123089023,1.31759163779209,1.75934646160189,1.39269530428806,1.36474860983384,0,1.08069024937347,0.199141273254367,6.06937283049861,5.36968009265725,5.63538678365402,2.8511185898344,3.10323979468201,2.45475369616115,0.379419222745544,0.147610147979602,0.156998727841375,0,0,2.16898637430922,1.57247196090562,0,0.608580364165509,0.482354319504834,0,0.287696137450811,0.162135226775035,0,1.43768206527355,0.372140947668503,0,0,0,0,0.923765950833023,4.54779388249163,2.77040459951444,1.69745085775188,1.17345124144251,1.00503754465089,0,0.390267295715598,0.157635144106191,0.221464689648775,0.159454768657487,0.491589944147214,0.518054945597687,0.867894351489069,0,0,1.47529281905711,2.20749397043786,8.99083303931635,8.90808818100744,0,0.252470927204373,2.2085575359138,3.12350995437311,2.15423397732799,0,0.668396022247182,0,1.21443210502468,1.46127928955656,1.18586333383957,14.4594592389813,12.6326675835359,5.87616492101942,4.39794790254655,1.64970122972535,1.32745138339963,20.6363540731734,22.3719432153916,21.3123740124165,23.328849537581,19.0609791725235,9.30341855405596,8.72480950746013,8.19943970284859,9.48110273807448,6.32511651449993,7.21948802737308,17.3624198934432,15.4852540866927,18.4982917809339,16.0752776273694,23.7635913080647,15.6964559489822,13.8221177305782,4.26250928760439,0.23467170806371,0,5.29268155331909,4.61681508236144,2.26050197374268,1.80938774784468,2.38744688006273,4.43180429311665,0.582961673259701,8.15871328846243,0,3.50857675537478,0.925972636848558,0.188368457004691,0,0,0,0,0,9.54670618015114,18.3474876277058,11.7925290933572,4.53622431451565,1.88179466413022,2.40198820120795,5.39457385539283,3.55409859618945,4.4498510137285,0.648074866458964,3.72803587852155,0,5.23307911153926,2.31641886639937,2.91676782516071,3.09983576346555,2.87225413334323,6.45464812551647,5.208175393758,0.629156066554265,0,0,0,2.63542779877213,1.33524244314275,1.16928740680016,0.358053391334963,0.596044064343795,0.240390899039938,0.443068581523732,0.100966449948148,0.0762068066549998,0,0,0,0,0.226730383615211,0.221985953374065,0,0.167884616364078,0.386379188064381,0.187682475451182,0.915758121336325,0,7.02200945649509,29.3670958160875,28.0798394269378,36.6653128601214,21.6535009753046,21.2375581128899,17.3740596399631,19.5756525067224,21.6154177547626,17.2194115413998,14.497288729051,23.7673025967765,37.5083380996969,17.4148277869217,9.23805524859517,11.947950269795,10.8467669985508,6.22290837844523,7.0051919461224,7.38114182061175,7.32821914115013,8.36481689637791,7.1678009726709,7.21039607518095,6.97874161213075,8.6727558122976,5.71552429539688,5.44656331940821,5.59436739344745,6.59337441285291,7.50714492685426,6.51451579532289,5.6792257970988,5.24559617884106,8.57543858130738,7.0582035311498,6.09225176820071,7.3171189149109,9.2074399003245,6.11118512306378,9.5394186181815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| |||
|short_description=p1@Cxxc4 | |||
}} |
Revision as of 01:48, 6 August 2015
Short description: | p1@Cxxc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cxxc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_NM_001004367, uc008rkv.1_5end |
EntrezGene: | 319478 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.36e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-13 | 23 |
neuron | 3.44e-08 | 33 |
neuronal stem cell | 3.44e-08 | 33 |
neuroblast | 3.44e-08 | 33 |
electrically signaling cell | 3.44e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 7.97e-25 | 64 |
neural plate | 7.97e-25 | 64 |
presumptive neural plate | 7.97e-25 | 64 |
ecto-epithelium | 1.19e-22 | 73 |
regional part of nervous system | 5.95e-22 | 54 |
pre-chordal neural plate | 6.14e-22 | 49 |
neural tube | 5.60e-21 | 52 |
neural rod | 5.60e-21 | 52 |
future spinal cord | 5.60e-21 | 52 |
neural keel | 5.60e-21 | 52 |
ectoderm-derived structure | 4.50e-19 | 95 |
ectoderm | 4.50e-19 | 95 |
presumptive ectoderm | 4.50e-19 | 95 |
central nervous system | 6.01e-18 | 73 |
brain | 6.95e-18 | 47 |
future brain | 6.95e-18 | 47 |
anterior neural tube | 1.04e-17 | 40 |
regional part of brain | 2.17e-17 | 46 |
structure with developmental contribution from neural crest | 2.27e-17 | 92 |
regional part of forebrain | 4.19e-17 | 39 |
forebrain | 4.19e-17 | 39 |
future forebrain | 4.19e-17 | 39 |
nervous system | 1.20e-16 | 75 |
gray matter | 1.02e-15 | 34 |
brain grey matter | 1.48e-12 | 29 |
regional part of telencephalon | 1.48e-12 | 29 |
telencephalon | 1.48e-12 | 29 |
cerebral cortex | 2.00e-08 | 21 |
cerebral hemisphere | 2.00e-08 | 21 |
pallium | 2.00e-08 | 21 |
regional part of cerebral cortex | 1.81e-07 | 17 |
occipital lobe | 2.67e-07 | 10 |
visual cortex | 2.67e-07 | 10 |
neocortex | 2.67e-07 | 10 |