FFCP PHASE1:Mm9::chr16:16560294..16560316,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=224014|HGNC=|MCL_coexpression_id=403|UniProt=Q91ZT5|association_with_transcript=0bp_to_ENSMUST00000161861,ENSMUST00000162045,ENSMUST00000162124_5end|description=CAGE_peak_4_at_Fgd4_5end|id=chr16:16560294..16560316,-|ontology_enrichment_celltype=CL:0000540!4.43e-12!33;CL:0000047!4.43e-12!33;CL:0000031!4.43e-12!33;CL:0000404!4.43e-12!33;CL:0000221!8.12e-12!44;CL:0000133!8.12e-12!44;CL:0002319!3.00e-11!43;CL:0000393!2.06e-10!39;CL:0000211!2.06e-10!39;CL:0000117!1.15e-09!23;CL:0000337!1.15e-09!23;CL:0000055!2.07e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-14,33;CL:0000047,1.13e-14,33;CL:0000031,1.13e-14,33;CL:0000404,1.13e-14,33;CL:0000221,9.54e-13,44;CL:0000133,9.54e-13,44;CL:0002319,4.53e-12,43;CL:0000117,1.15e-11,23;CL:0000337,1.15e-11,23;CL:0000393,1.22e-11,39;CL:0000211,1.22e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.20e-31!102;UBERON:0000924!2.20e-31!102;UBERON:0006601!2.20e-31!102;UBERON:0000073!2.09e-29!75;UBERON:0001016!2.09e-29!75;UBERON:0001017!4.67e-28!73;UBERON:0005743!4.67e-28!73;UBERON:0002346!5.10e-28!71;UBERON:0003075!5.10e-28!71;UBERON:0007284!5.10e-28!71;UBERON:0000033!1.53e-27!63;UBERON:0003056!3.46e-24!49;UBERON:0001049!2.86e-23!52;UBERON:0005068!2.86e-23!52;UBERON:0006241!2.86e-23!52;UBERON:0007135!2.86e-23!52;UBERON:0000955!4.95e-23!50;UBERON:0006238!4.95e-23!50;UBERON:0002616!2.99e-22!49;UBERON:0003080!3.16e-19!40;UBERON:0002780!1.19e-18!39;UBERON:0001890!1.19e-18!39;UBERON:0006240!1.19e-18!39;UBERON:0002020!6.91e-17!34;UBERON:0002791!5.46e-15!29;UBERON:0003528!5.46e-15!29;UBERON:0001893!5.46e-15!29;UBERON:0000153!4.41e-13!94;UBERON:0007811!2.27e-12!86;UBERON:0000956!1.61e-11!21;UBERON:0001869!1.61e-11!21;UBERON:0000203!1.61e-11!21;UBERON:0002619!1.59e-09!17;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10;UBERON:0000468!5.86e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.20e-35,64;UBERON:0003075,3.20e-35,64;UBERON:0007284,3.20e-35,64;UBERON:0004121,1.64e-34,95;UBERON:0000924,1.64e-34,95;UBERON:0006601,1.64e-34,95;UBERON:0001016,1.43e-33,75;UBERON:0001017,6.29e-32,73;UBERON:0010371,2.56e-31,73;UBERON:0000073,3.88e-29,54;UBERON:0003056,1.93e-28,49;UBERON:0001049,9.44e-28,52;UBERON:0005068,9.44e-28,52;UBERON:0006241,9.44e-28,52;UBERON:0007135,9.44e-28,52;UBERON:0000955,2.11e-25,47;UBERON:0006238,2.11e-25,47;UBERON:0002616,1.89e-24,46;UBERON:0003080,2.71e-22,40;UBERON:0002780,1.40e-21,39;UBERON:0001890,1.40e-21,39;UBERON:0006240,1.40e-21,39;UBERON:0010314,1.79e-20,92;UBERON:0002020,5.38e-20,34;UBERON:0003528,1.27e-17,29;UBERON:0002791,1.27e-17,29;UBERON:0001893,1.27e-17,29;UBERON:0000956,2.69e-13,21;UBERON:0001869,2.69e-13,21;UBERON:0000203,2.69e-13,21;UBERON:0002619,8.11e-11,17;UBERON:0002021,7.82e-09,10;UBERON:0000411,7.82e-09,10;UBERON:0001950,7.82e-09,10;UBERON:0000020,7.49e-07,12;UBERON:0001032,7.49e-07,12;UBERON:0004456,7.49e-07,12;UBERON:0000970,8.02e-07,9;UBERON:0000019,8.02e-07,9;UBERON:0000047,8.02e-07,9;UBERON:0010312,8.02e-07,9;UBERON:0004088,8.02e-07,9;UBERON:0002104,8.02e-07,9;UBERON:0001456,8.02e-07,9;UBERON:0003072,8.02e-07,9;UBERON:0004128,8.02e-07,9;UBERON:0003071,8.02e-07,9|phase1_expression=3.20297694209588,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0,0,0,1.14846392823004,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.304130793658544,4.58866880404204,0,1.30815093828268,0.659058548203415,2.3331587888914,0.839918529752175,0,0,0,0,0,0.286533439938757,0.515672092277442,2.42779753031517,2.11596391708813,3.1691570175309,0.677689064138264,0.889294796111139,0.899899717281399,0,0,0.898800331555214,0.768436610643109,8.39885859698669,4.72520784160917,3.57552434297349,2.57085885963423,3.09215957332259,7.59442955132715,5.55903731905771,2.75765635983006,6.60695285996332,6.63974158042976,4.91540906419979,4.08847491963601,4.66586982372289,4.68822033501084,2.51264699101243,4.50210088025344,5.34793867218835,5.89257170947335,6.83384067835694,4.65998614563251,9.69295274664756,6.65029728939713,2.31891590961342,0,2.03991400112325,0.539703191637817,0.649776417447669,0.448026887097336,0.421333260395256,0,0,0,10.4224130634744,0,0,0,0,0,0,0.5709193985953,0,0.742210695324124,0.520455980298408,0.608930956624282,1.38369298353635,1.20578112442098,1.05829836422134,0.251333182659351,0.247194967734374,0.144599356919912,0,0.647067399789637,0,0,0,20.7874365878198,18.2218634927706,0,0,0,0,7.18995069143149,8.23501085073528,10.9319286338192,12.3415267336516,14.0643501531682,7.48036960414416,11.6813709408785,0.101839363850316,0.248813941220186,0,4.41927897361595,4.29397461776922,3.44853156650209,3.96136685571768,9.49440352365005,9.11689088627793,11.2740073850668,10.7756983243688,7.50239775143145,1.07783996466421,3.21480336285293,1.93546236580344,1.7535658594206,2.50242524303038,1.74126083261083,2.46938563689532,0.199034266818493,0,0,0,0.621377317606506,0.938104239924385,0.720248245844059,0.473489471170421,0.393528463494808,0.462801338662135,0.465067889500816,0,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0.146199987425332,0,0.268412837520744,14.0894265537965,16.2589287559269,0,0,0.213288250535234,0.464473343720877,1.80414445850931,0.403367049246685,0.889512175379481,0.760902504450237,0,0.329397909448022,0.251335208800269,0,0.38992817423824,0,0.216138049874694,0.597423819763102,0,0.456994050438915,0,0.203651327845314,0,0.140271639780637,0.505892296994058,1.62371162777562,1.09899109488962,0.740382983530803,0.592905254174298,0,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,1.07638448113147,0.964887042726734,0.184753190166605,0,0,0.339490171550376,0,0,0,0,0.472905432318573,0,0,0.327726629431476,0.518054945597687,0,1.50791283939272,0,0,0.275936746304732,5.13761887960934,5.97779601620236,0,0.757412781613119,2.52406575533005,1.56175497718655,4.95473814785438,2.62865677747807,3.34198011123591,5.09537755419898,2.02405350837447,4.67609372658099,1.97643888973262,21.5285282002611,0.709700426041343,0.178065603667255,0,0.329940245945071,1.32745138339963,2.18502572539483,3.32555912661226,3.96070667487386,0,1.53717573971964,1.03371317267288,0.727067458955011,0.712994756769443,0,0,0,9.53230896110606,3.42116078659489,1.03486947026204,3.21505552547388,7.98031051390231,8.38333442729732,4.60737257685939,0.608929898229199,0,0.42366414172764,0.220528398054962,0.49465875882444,1.77610869365496,0.603129249281559,0.716234064018819,0.820704498725306,0.291480836629851,5.56275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,1.90934123603023,0.949007980743406,0.609958401380546,1.51207477150522,0.836353184057875,0.436725127492355,0.809186078308924,2.31429676030941,8.11443420150492,0.259229946583586,0,0.56369293868419,1.19613236835183,0.496375471371293,0.194451188344048,0,0.506868376472335,0,0.2604087696879,1.25831213310853,0.724752362478018,0.288030006257865,0,0.405450430580328,0.205421914329655,0,0.358053391334963,0,0.120195449519969,0.147689527174577,0,0.0762068066549998,0,0,0.192423683280659,0,0.226730383615211,0,0,0,0,0.375364950902364,3.47988086107804,1.07184189539533,0,13.5540442228096,17.9526842237799,12.6037012956667,14.0919609521824,5.48066015816514,5.2877572817279,10.8003600037089,6.75481804836331,10.4222754066367,8.28416498802912,2.49089634202024,3.59122386060928,2.21953687480374,2.43106717068294,2.09613162627982,0.919217542250071,2.66696073361938,3.09052585858341,2.56735367673452,1.76888048234658,3.29523089857312,3.39527414494937,3.09016974650612,3.52138338226781,3.67587001315925,3.33405583898152,3.24476112645595,3.27945674788299,2.88460130562315,2.35518272215036,4.11443102862498,2.8396128985494,3.81497903915713,3.0522747492789,2.91739079287525,2.876896668317,2.0122077016005,2.89376682581627,3.12349461845482,0.561142271657738,1.77952527186261,2.9551344712669,2.45538625901814,2.78886314134739,2.89359916471712,3.49734809113124,3.04111090979031,1.93383948643468,0.956441660344217,1.10295709559758,0.927471342481686|short_description=p4@Fgd4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:224014 | |||
|HGNC= | |||
|MCL_coexpression_id=403 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91ZT5 | |||
|association_with_transcript=0bp_to_ENSMUST00000161861,ENSMUST00000162045,ENSMUST00000162124_5end | |||
|cluster_id=chr16:16560294..16560316,- | |||
|description=CAGE_peak_4_at_Fgd4_5end | |||
|id=chr16:16560294..16560316,- | |||
|ontology_enrichment_celltype=CL:0000540!4.43e-12!33;CL:0000047!4.43e-12!33;CL:0000031!4.43e-12!33;CL:0000404!4.43e-12!33;CL:0000221!8.12e-12!44;CL:0000133!8.12e-12!44;CL:0002319!3.00e-11!43;CL:0000393!2.06e-10!39;CL:0000211!2.06e-10!39;CL:0000117!1.15e-09!23;CL:0000337!1.15e-09!23;CL:0000055!2.07e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-14,33;CL:0000047,1.13e-14,33;CL:0000031,1.13e-14,33;CL:0000404,1.13e-14,33;CL:0000221,9.54e-13,44;CL:0000133,9.54e-13,44;CL:0002319,4.53e-12,43;CL:0000117,1.15e-11,23;CL:0000337,1.15e-11,23;CL:0000393,1.22e-11,39;CL:0000211,1.22e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.20e-31!102;UBERON:0000924!2.20e-31!102;UBERON:0006601!2.20e-31!102;UBERON:0000073!2.09e-29!75;UBERON:0001016!2.09e-29!75;UBERON:0001017!4.67e-28!73;UBERON:0005743!4.67e-28!73;UBERON:0002346!5.10e-28!71;UBERON:0003075!5.10e-28!71;UBERON:0007284!5.10e-28!71;UBERON:0000033!1.53e-27!63;UBERON:0003056!3.46e-24!49;UBERON:0001049!2.86e-23!52;UBERON:0005068!2.86e-23!52;UBERON:0006241!2.86e-23!52;UBERON:0007135!2.86e-23!52;UBERON:0000955!4.95e-23!50;UBERON:0006238!4.95e-23!50;UBERON:0002616!2.99e-22!49;UBERON:0003080!3.16e-19!40;UBERON:0002780!1.19e-18!39;UBERON:0001890!1.19e-18!39;UBERON:0006240!1.19e-18!39;UBERON:0002020!6.91e-17!34;UBERON:0002791!5.46e-15!29;UBERON:0003528!5.46e-15!29;UBERON:0001893!5.46e-15!29;UBERON:0000153!4.41e-13!94;UBERON:0007811!2.27e-12!86;UBERON:0000956!1.61e-11!21;UBERON:0001869!1.61e-11!21;UBERON:0000203!1.61e-11!21;UBERON:0002619!1.59e-09!17;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10;UBERON:0000468!5.86e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.20e-35,64;UBERON:0003075,3.20e-35,64;UBERON:0007284,3.20e-35,64;UBERON:0004121,1.64e-34,95;UBERON:0000924,1.64e-34,95;UBERON:0006601,1.64e-34,95;UBERON:0001016,1.43e-33,75;UBERON:0001017,6.29e-32,73;UBERON:0010371,2.56e-31,73;UBERON:0000073,3.88e-29,54;UBERON:0003056,1.93e-28,49;UBERON:0001049,9.44e-28,52;UBERON:0005068,9.44e-28,52;UBERON:0006241,9.44e-28,52;UBERON:0007135,9.44e-28,52;UBERON:0000955,2.11e-25,47;UBERON:0006238,2.11e-25,47;UBERON:0002616,1.89e-24,46;UBERON:0003080,2.71e-22,40;UBERON:0002780,1.40e-21,39;UBERON:0001890,1.40e-21,39;UBERON:0006240,1.40e-21,39;UBERON:0010314,1.79e-20,92;UBERON:0002020,5.38e-20,34;UBERON:0003528,1.27e-17,29;UBERON:0002791,1.27e-17,29;UBERON:0001893,1.27e-17,29;UBERON:0000956,2.69e-13,21;UBERON:0001869,2.69e-13,21;UBERON:0000203,2.69e-13,21;UBERON:0002619,8.11e-11,17;UBERON:0002021,7.82e-09,10;UBERON:0000411,7.82e-09,10;UBERON:0001950,7.82e-09,10;UBERON:0000020,7.49e-07,12;UBERON:0001032,7.49e-07,12;UBERON:0004456,7.49e-07,12;UBERON:0000970,8.02e-07,9;UBERON:0000019,8.02e-07,9;UBERON:0000047,8.02e-07,9;UBERON:0010312,8.02e-07,9;UBERON:0004088,8.02e-07,9;UBERON:0002104,8.02e-07,9;UBERON:0001456,8.02e-07,9;UBERON:0003072,8.02e-07,9;UBERON:0004128,8.02e-07,9;UBERON:0003071,8.02e-07,9 | |||
|phase1_expression=3.20297694209588,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0,0,0,1.14846392823004,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.304130793658544,4.58866880404204,0,1.30815093828268,0.659058548203415,2.3331587888914,0.839918529752175,0,0,0,0,0,0.286533439938757,0.515672092277442,2.42779753031517,2.11596391708813,3.1691570175309,0.677689064138264,0.889294796111139,0.899899717281399,0,0,0.898800331555214,0.768436610643109,8.39885859698669,4.72520784160917,3.57552434297349,2.57085885963423,3.09215957332259,7.59442955132715,5.55903731905771,2.75765635983006,6.60695285996332,6.63974158042976,4.91540906419979,4.08847491963601,4.66586982372289,4.68822033501084,2.51264699101243,4.50210088025344,5.34793867218835,5.89257170947335,6.83384067835694,4.65998614563251,9.69295274664756,6.65029728939713,2.31891590961342,0,2.03991400112325,0.539703191637817,0.649776417447669,0.448026887097336,0.421333260395256,0,0,0,10.4224130634744,0,0,0,0,0,0,0.5709193985953,0,0.742210695324124,0.520455980298408,0.608930956624282,1.38369298353635,1.20578112442098,1.05829836422134,0.251333182659351,0.247194967734374,0.144599356919912,0,0.647067399789637,0,0,0,20.7874365878198,18.2218634927706,0,0,0,0,7.18995069143149,8.23501085073528,10.9319286338192,12.3415267336516,14.0643501531682,7.48036960414416,11.6813709408785,0.101839363850316,0.248813941220186,0,4.41927897361595,4.29397461776922,3.44853156650209,3.96136685571768,9.49440352365005,9.11689088627793,11.2740073850668,10.7756983243688,7.50239775143145,1.07783996466421,3.21480336285293,1.93546236580344,1.7535658594206,2.50242524303038,1.74126083261083,2.46938563689532,0.199034266818493,0,0,0,0.621377317606506,0.938104239924385,0.720248245844059,0.473489471170421,0.393528463494808,0.462801338662135,0.465067889500816,0,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0.146199987425332,0,0.268412837520744,14.0894265537965,16.2589287559269,0,0,0.213288250535234,0.464473343720877,1.80414445850931,0.403367049246685,0.889512175379481,0.760902504450237,0,0.329397909448022,0.251335208800269,0,0.38992817423824,0,0.216138049874694,0.597423819763102,0,0.456994050438915,0,0.203651327845314,0,0.140271639780637,0.505892296994058,1.62371162777562,1.09899109488962,0.740382983530803,0.592905254174298,0,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,1.07638448113147,0.964887042726734,0.184753190166605,0,0,0.339490171550376,0,0,0,0,0.472905432318573,0,0,0.327726629431476,0.518054945597687,0,1.50791283939272,0,0,0.275936746304732,5.13761887960934,5.97779601620236,0,0.757412781613119,2.52406575533005,1.56175497718655,4.95473814785438,2.62865677747807,3.34198011123591,5.09537755419898,2.02405350837447,4.67609372658099,1.97643888973262,21.5285282002611,0.709700426041343,0.178065603667255,0,0.329940245945071,1.32745138339963,2.18502572539483,3.32555912661226,3.96070667487386,0,1.53717573971964,1.03371317267288,0.727067458955011,0.712994756769443,0,0,0,9.53230896110606,3.42116078659489,1.03486947026204,3.21505552547388,7.98031051390231,8.38333442729732,4.60737257685939,0.608929898229199,0,0.42366414172764,0.220528398054962,0.49465875882444,1.77610869365496,0.603129249281559,0.716234064018819,0.820704498725306,0.291480836629851,5.56275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,1.90934123603023,0.949007980743406,0.609958401380546,1.51207477150522,0.836353184057875,0.436725127492355,0.809186078308924,2.31429676030941,8.11443420150492,0.259229946583586,0,0.56369293868419,1.19613236835183,0.496375471371293,0.194451188344048,0,0.506868376472335,0,0.2604087696879,1.25831213310853,0.724752362478018,0.288030006257865,0,0.405450430580328,0.205421914329655,0,0.358053391334963,0,0.120195449519969,0.147689527174577,0,0.0762068066549998,0,0,0.192423683280659,0,0.226730383615211,0,0,0,0,0.375364950902364,3.47988086107804,1.07184189539533,0,13.5540442228096,17.9526842237799,12.6037012956667,14.0919609521824,5.48066015816514,5.2877572817279,10.8003600037089,6.75481804836331,10.4222754066367,8.28416498802912,2.49089634202024,3.59122386060928,2.21953687480374,2.43106717068294,2.09613162627982,0.919217542250071,2.66696073361938,3.09052585858341,2.56735367673452,1.76888048234658,3.29523089857312,3.39527414494937,3.09016974650612,3.52138338226781,3.67587001315925,3.33405583898152,3.24476112645595,3.27945674788299,2.88460130562315,2.35518272215036,4.11443102862498,2.8396128985494,3.81497903915713,3.0522747492789,2.91739079287525,2.876896668317,2.0122077016005,2.89376682581627,3.12349461845482,0.561142271657738,1.77952527186261,2.9551344712669,2.45538625901814,2.78886314134739,2.89359916471712,3.49734809113124,3.04111090979031,1.93383948643468,0.956441660344217,1.10295709559758,0.927471342481686 | |||
|short_description=p4@Fgd4 | |||
}} |
Revision as of 02:08, 6 August 2015
Short description: | p4@Fgd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Fgd4_5end |
Coexpression cluster: | MCL_coexpression_mm9:403 |
Association with transcript: | 0bp_to_ENSMUST00000161861, ENSMUST00000162045, ENSMUST00000162124_5end |
EntrezGene: | 224014 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.13e-14 | 33 |
neuronal stem cell | 1.13e-14 | 33 |
neuroblast | 1.13e-14 | 33 |
electrically signaling cell | 1.13e-14 | 33 |
ectodermal cell | 9.54e-13 | 44 |
neurectodermal cell | 9.54e-13 | 44 |
neural cell | 4.53e-12 | 43 |
CNS neuron (sensu Vertebrata) | 1.15e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.15e-11 | 23 |
electrically responsive cell | 1.22e-11 | 39 |
electrically active cell | 1.22e-11 | 39 |