FFCP PHASE1:Mm9::chrX:160346914..160346925,+: Difference between revisions
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{{FFCP|EntrezGene=108012|HGNC=|MCL_coexpression_id=208|UniProt=Q9DB50|association_with_transcript=-23bp_to_ENSMUST00000069041_5end|description=CAGE_peak_3_at_Ap1s2_5end|id=chrX:160346914..160346925,+|ontology_enrichment_celltype=CL:0000117!2.30e-14!23;CL:0000337!2.30e-14!23;CL:0000540!8.23e-12!33;CL:0000047!8.23e-12!33;CL:0000031!8.23e-12!33;CL:0000404!8.23e-12!33;CL:0002319!1.43e-09!43;CL:0000393!2.38e-09!39;CL:0000211!2.38e-09!39;CL:0000221!4.51e-09!44;CL:0000133!4.51e-09!44;CL:0000055!6.91e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.02e-19,23;CL:0000337,4.02e-19,23;CL:0000540,4.67e-14,33;CL:0000047,4.67e-14,33;CL:0000031,4.67e-14,33;CL:0000404,4.67e-14,33;CL:0000393,2.96e-12,39;CL:0000211,2.96e-12,39;CL:0002319,6.13e-10,43;CL:0000221,1.79e-09,44;CL:0000133,1.79e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.44e-18!75;UBERON:0001016!8.44e-18!75;UBERON:0001017!1.10e-17!73;UBERON:0005743!1.10e-17!73;UBERON:0001049!4.26e-15!52;UBERON:0005068!4.26e-15!52;UBERON:0006241!4.26e-15!52;UBERON:0007135!4.26e-15!52;UBERON:0004121!4.27e-15!102;UBERON:0000924!4.27e-15!102;UBERON:0006601!4.27e-15!102;UBERON:0002346!5.81e-15!71;UBERON:0003075!5.81e-15!71;UBERON:0007284!5.81e-15!71;UBERON:0000033!3.56e-14!63;UBERON:0000955!5.45e-14!50;UBERON:0006238!5.45e-14!50;UBERON:0002616!1.49e-13!49;UBERON:0003056!1.66e-13!49;UBERON:0007811!4.28e-11!86;UBERON:0003080!4.39e-11!40;UBERON:0002020!7.93e-11!34;UBERON:0002780!1.73e-10!39;UBERON:0001890!1.73e-10!39;UBERON:0006240!1.73e-10!39;UBERON:0000153!2.63e-09!94;UBERON:0002791!3.49e-08!29;UBERON:0003528!3.49e-08!29;UBERON:0001893!3.49e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.12e-21,64;UBERON:0003075,9.12e-21,64;UBERON:0007284,9.12e-21,64;UBERON:0000073,1.74e-20,54;UBERON:0001017,2.81e-20,73;UBERON:0001016,3.50e-20,75;UBERON:0001049,9.54e-19,52;UBERON:0005068,9.54e-19,52;UBERON:0006241,9.54e-19,52;UBERON:0007135,9.54e-19,52;UBERON:0004121,3.77e-18,95;UBERON:0000924,3.77e-18,95;UBERON:0006601,3.77e-18,95;UBERON:0003056,7.44e-17,49;UBERON:0010371,7.40e-16,73;UBERON:0000955,8.57e-15,47;UBERON:0006238,8.57e-15,47;UBERON:0002616,3.14e-14,46;UBERON:0003080,6.56e-14,40;UBERON:0002020,7.91e-14,34;UBERON:0002780,4.14e-13,39;UBERON:0001890,4.14e-13,39;UBERON:0006240,4.14e-13,39;UBERON:0010314,8.69e-11,92;UBERON:0003528,3.02e-10,29;UBERON:0002791,3.02e-10,29;UBERON:0001893,3.02e-10,29;UBERON:0002420,5.73e-08,8;UBERON:0007245,5.73e-08,8;UBERON:0010009,5.73e-08,8;UBERON:0010011,5.73e-08,8;UBERON:0000454,5.73e-08,8|phase1_expression=0.80074423552397,0,0,0,0,0.33575854382378,0.233612640595526,0,0.985521055061667,0.70219357896598,1.19852577757853,0,0.171200729931206,0.262261207256992,0.333109761815663,0.404950534779652,0.699561878128147,0.315462165358238,0.411343300817216,0.84877930359606,3.91199134694921,0.297872853602656,0.783599367416806,0.319984845586813,0.45881856213434,0,0,0.430942465371778,0.190023419456374,0,0.221730510655305,0.635030673459631,1.23012957516914,0,0,0.166234645358492,0,6.27797446105362,5.4693474116666,5.23523743973798,4.70585190424811,6.14740936462601,8.25367600152961,0,0,0,0.782391344348039,0,0.439372365468944,0.777719596297134,0.419959264876088,1.43752564364972,0.167782606057736,0.725362142011344,0.672187598284928,2.05807548828758,0.573066879877513,2.06268836910977,11.5320382689971,8.46385566835253,8.23980824558033,0,0,0.449949858640699,0,0.7104801149461,0.898800331555214,0.384218305321555,4.87341177849845,2.8351247049655,2.94454945891935,9.99778445413313,6.40518768759679,6.00204916153275,4.88811902193005,4.5960939330501,17.6185409599022,12.5133591323484,19.3544231902867,7.25374582516066,5.76372154695181,7.8137005583514,20.9387249251036,11.2552522006336,13.9046405476897,6.77645746589436,9.11178757114259,10.4383689662168,0.605809546665472,1.73814588245607,0.579728977403356,0.860423876981386,0,0,0,0,1.54488862144927,0.340860645156116,0,0.35333957451034,0.281686839553361,0,0,0,0.216491041011214,0.760079596425296,0,0.91347103775248,0.517875767294343,0.593768556259299,0.346970653532272,0.913396434936424,0,0.904335843315735,0.823120949949934,0.251333182659351,0.741584903203122,0.722996784599558,3.5384422077995,0.323533699894818,1.76673214768315,0,0,3.51336956413857,0.83778682725382,0,1.43778149407104,3.59941638596045,1.65191295194984,14.6794826616726,7.77751024791665,13.3193613239636,3.99795936442236,2.30143911597297,10.8049783170971,7.46309810111685,0.611036183101898,2.61254638281195,10.6143558542143,1.47309299120532,0.650602214813519,2.06911893990126,2.52086981727489,1.05493372485001,2.85753296435577,2.69038812598185,4.02917415606834,2.06962696591213,0.646703978798527,0.567318240503458,0.351902248327898,0.219195732427575,0.278047249225598,0.348252166522167,0.61734640922383,0.995171334092466,2.1066395619397,1.02939162845886,2.84163499395593,0.207125772535502,0.469052119962192,0.36012412292203,0.710234206755631,0.590292695242212,0.771335564436891,0.465067889500816,1.07309360559848,0.817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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:108012 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DB50 | |||
|association_with_transcript=-23bp_to_ENSMUST00000069041_5end | |||
|cluster_id=chrX:160346914..160346925,+ | |||
|description=CAGE_peak_3_at_Ap1s2_5end | |||
|id=chrX:160346914..160346925,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.30e-14!23;CL:0000337!2.30e-14!23;CL:0000540!8.23e-12!33;CL:0000047!8.23e-12!33;CL:0000031!8.23e-12!33;CL:0000404!8.23e-12!33;CL:0002319!1.43e-09!43;CL:0000393!2.38e-09!39;CL:0000211!2.38e-09!39;CL:0000221!4.51e-09!44;CL:0000133!4.51e-09!44;CL:0000055!6.91e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.02e-19,23;CL:0000337,4.02e-19,23;CL:0000540,4.67e-14,33;CL:0000047,4.67e-14,33;CL:0000031,4.67e-14,33;CL:0000404,4.67e-14,33;CL:0000393,2.96e-12,39;CL:0000211,2.96e-12,39;CL:0002319,6.13e-10,43;CL:0000221,1.79e-09,44;CL:0000133,1.79e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.44e-18!75;UBERON:0001016!8.44e-18!75;UBERON:0001017!1.10e-17!73;UBERON:0005743!1.10e-17!73;UBERON:0001049!4.26e-15!52;UBERON:0005068!4.26e-15!52;UBERON:0006241!4.26e-15!52;UBERON:0007135!4.26e-15!52;UBERON:0004121!4.27e-15!102;UBERON:0000924!4.27e-15!102;UBERON:0006601!4.27e-15!102;UBERON:0002346!5.81e-15!71;UBERON:0003075!5.81e-15!71;UBERON:0007284!5.81e-15!71;UBERON:0000033!3.56e-14!63;UBERON:0000955!5.45e-14!50;UBERON:0006238!5.45e-14!50;UBERON:0002616!1.49e-13!49;UBERON:0003056!1.66e-13!49;UBERON:0007811!4.28e-11!86;UBERON:0003080!4.39e-11!40;UBERON:0002020!7.93e-11!34;UBERON:0002780!1.73e-10!39;UBERON:0001890!1.73e-10!39;UBERON:0006240!1.73e-10!39;UBERON:0000153!2.63e-09!94;UBERON:0002791!3.49e-08!29;UBERON:0003528!3.49e-08!29;UBERON:0001893!3.49e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.12e-21,64;UBERON:0003075,9.12e-21,64;UBERON:0007284,9.12e-21,64;UBERON:0000073,1.74e-20,54;UBERON:0001017,2.81e-20,73;UBERON:0001016,3.50e-20,75;UBERON:0001049,9.54e-19,52;UBERON:0005068,9.54e-19,52;UBERON:0006241,9.54e-19,52;UBERON:0007135,9.54e-19,52;UBERON:0004121,3.77e-18,95;UBERON:0000924,3.77e-18,95;UBERON:0006601,3.77e-18,95;UBERON:0003056,7.44e-17,49;UBERON:0010371,7.40e-16,73;UBERON:0000955,8.57e-15,47;UBERON:0006238,8.57e-15,47;UBERON:0002616,3.14e-14,46;UBERON:0003080,6.56e-14,40;UBERON:0002020,7.91e-14,34;UBERON:0002780,4.14e-13,39;UBERON:0001890,4.14e-13,39;UBERON:0006240,4.14e-13,39;UBERON:0010314,8.69e-11,92;UBERON:0003528,3.02e-10,29;UBERON:0002791,3.02e-10,29;UBERON:0001893,3.02e-10,29;UBERON:0002420,5.73e-08,8;UBERON:0007245,5.73e-08,8;UBERON:0010009,5.73e-08,8;UBERON:0010011,5.73e-08,8;UBERON:0000454,5.73e-08,8 | |||
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| |||
|short_description=p3@Ap1s2 | |||
}} |
Revision as of 03:55, 6 August 2015
Short description: | p3@Ap1s2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ap1s2_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | -23bp_to_ENSMUST00000069041_5end |
EntrezGene: | 108012 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.02e-19 | 23 |
neuroblast (sensu Vertebrata) | 4.02e-19 | 23 |
neuron | 4.67e-14 | 33 |
neuronal stem cell | 4.67e-14 | 33 |
neuroblast | 4.67e-14 | 33 |
electrically signaling cell | 4.67e-14 | 33 |
electrically responsive cell | 2.96e-12 | 39 |
electrically active cell | 2.96e-12 | 39 |
neural cell | 6.13e-10 | 43 |
ectodermal cell | 1.79e-09 | 44 |
neurectodermal cell | 1.79e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.12e-21 | 64 |
neural plate | 9.12e-21 | 64 |
presumptive neural plate | 9.12e-21 | 64 |
regional part of nervous system | 1.74e-20 | 54 |
central nervous system | 2.81e-20 | 73 |
nervous system | 3.50e-20 | 75 |
neural tube | 9.54e-19 | 52 |
neural rod | 9.54e-19 | 52 |
future spinal cord | 9.54e-19 | 52 |
neural keel | 9.54e-19 | 52 |
ectoderm-derived structure | 3.77e-18 | 95 |
ectoderm | 3.77e-18 | 95 |
presumptive ectoderm | 3.77e-18 | 95 |
pre-chordal neural plate | 7.44e-17 | 49 |
ecto-epithelium | 7.40e-16 | 73 |
brain | 8.57e-15 | 47 |
future brain | 8.57e-15 | 47 |
regional part of brain | 3.14e-14 | 46 |
anterior neural tube | 6.56e-14 | 40 |
gray matter | 7.91e-14 | 34 |
regional part of forebrain | 4.14e-13 | 39 |
forebrain | 4.14e-13 | 39 |
future forebrain | 4.14e-13 | 39 |
structure with developmental contribution from neural crest | 8.69e-11 | 92 |
brain grey matter | 3.02e-10 | 29 |
regional part of telencephalon | 3.02e-10 | 29 |
telencephalon | 3.02e-10 | 29 |
basal ganglion | 5.73e-08 | 8 |
nuclear complex of neuraxis | 5.73e-08 | 8 |
aggregate regional part of brain | 5.73e-08 | 8 |
collection of basal ganglia | 5.73e-08 | 8 |
cerebral subcortex | 5.73e-08 | 8 |