FFCP PHASE1:Hg19::chr10:100206642..100206717,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3257 | |EntrezGene=3257 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5163 | |HGNC=5163 | ||
|TSSclassifier=strong | |||
|UniProt=Q92902,Q658M9,Q8WXE5 | |UniProt=Q92902,Q658M9,Q8WXE5 | ||
|association_with_transcript=0bp_to_ENST00000325103,ENST00000338546,ENST00000361490,ENST00000407891,ENST00000465957,ENST00000467246,NM_000195,NM_182639,uc001kpi.1,uc001kpk.1,uc001kpl.2,uc001kpm.1,uc009xwb.2,uc010qpf.1,uc010qph.1_5end | |||
|cluster_id=chr10:100206642..100206717,- | |||
|description=CAGE_peak_1_at_HPS1_5end | |||
|id=chr10:100206642..100206717,- | |||
|ontology_enrichment_celltype=CL:0002371!5.28e-27!591;CL:0000144!1.93e-24!625;CL:0002320!3.24e-24!365;CL:0000037!3.58e-24!172;CL:0000566!3.58e-24!172;CL:0000988!4.94e-24!182;CL:0002032!1.90e-23!165;CL:0000837!1.90e-23!165;CL:0000134!7.87e-23!358;CL:0000048!1.12e-22!430;CL:0000763!3.59e-22!112;CL:0000049!3.59e-22!112;CL:0000723!7.13e-22!436;CL:0000034!2.07e-21!444;CL:0000738!3.34e-21!140;CL:0000839!1.31e-20!70;CL:0002031!1.45e-20!124;CL:0002009!2.74e-20!65;CL:0000219!3.01e-20!390;CL:0000557!3.29e-20!71;CL:0002087!6.35e-20!119;CL:0002194!6.50e-20!63;CL:0000576!6.50e-20!63;CL:0000040!6.50e-20!63;CL:0000559!6.50e-20!63;CL:0000766!1.02e-18!76;CL:0002057!1.28e-17!42;CL:0000003!1.40e-16!722;CL:0000860!2.47e-14!45;CL:0000063!1.27e-12!578;CL:0000012!2.34e-11!682;CL:0000548!3.07e-11!679;CL:0000004!3.07e-11!679;CL:0000255!3.07e-11!679 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.52e-14;39!CL:0000234;3.52e-14;39!CL:0000860;3.07e-13;33!CL:0002057;3.07e-13;33!CL:0000576;9.08e-13;48!CL:0000766;4.98e-10;69!CL:0000763;1.56e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.22e-26,168;CL:0000988,4.82e-26,177;CL:0002032,1.14e-25,161;CL:0000837,1.14e-25,161;CL:0002320,1.96e-25,361;CL:0000763,6.76e-25,108;CL:0000049,6.76e-25,108;CL:0000839,3.61e-24,66;CL:0000134,5.07e-24,354;CL:0002009,5.34e-24,61;CL:0000048,5.62e-24,427;CL:0000557,1.09e-23,67;CL:0002194,1.17e-23,59;CL:0000576,1.17e-23,59;CL:0000040,1.17e-23,59;CL:0000559,1.17e-23,59;CL:0000738,1.67e-23,136;CL:0000723,3.84e-23,433;CL:0002031,5.37e-23,120;CL:0000034,1.17e-22,441;CL:0002087,2.28e-22,115;CL:0000766,7.26e-22,72;CL:0000219,2.56e-21,386;CL:0000473,2.65e-21,48;CL:0000234,2.65e-21,48;CL:0000860,1.28e-17,42;CL:0002057,1.28e-17,42 | |||
|ontology_enrichment_development_v019=CL:0002057;3.48e-13;42!CL:0000049;4.83e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.13e-24!112;UBERON:0002390!1.21e-23!102;UBERON:0003061!1.21e-23!102;UBERON:0003081!3.65e-23!216;UBERON:0002384!6.35e-22!375;UBERON:0002371!3.48e-20!80;UBERON:0002405!2.54e-18!115;UBERON:0001474!8.46e-17!86;UBERON:0004765!2.02e-14!101;UBERON:0001434!2.02e-14!101;UBERON:0002204!4.65e-12!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.35e-27,108;UBERON:0002390,1.16e-26,98;UBERON:0003061,1.16e-26,98;UBERON:0003081,5.63e-25,203;UBERON:0002405,2.25e-24,93;UBERON:0002371,2.19e-23,76;UBERON:0002384,4.60e-23,371;UBERON:0001474,1.71e-19,82;UBERON:0004765,2.07e-18,90;UBERON:0000926,7.44e-17,315;UBERON:0004120,7.44e-17,315;UBERON:0006603,7.44e-17,315;UBERON:0001434,1.18e-16,100;UBERON:0002204,8.50e-14,167 | |||
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| ||
|short_description=p1@HPS1 | |||
}} | }} |
Latest revision as of 18:03, 15 September 2015
Short description: | p1@HPS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HPS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000325103, ENST00000338546, ENST00000361490, ENST00000407891, ENST00000465957, ENST00000467246, NM_000195, NM_182639, uc001kpi.1, uc001kpk.1, uc001kpl.2, uc001kpm.1, uc009xwb.2, uc010qpf.1, uc010qph.1_5end |
EntrezGene: | HPS1 |
HGNC: | 5163 |
UniProt: | Q92902Q658M9Q8WXE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.22e-26 | 168 |
hematopoietic cell | 4.82e-26 | 177 |
hematopoietic oligopotent progenitor cell | 1.14e-25 | 161 |
hematopoietic multipotent progenitor cell | 1.14e-25 | 161 |
connective tissue cell | 1.96e-25 | 361 |
myeloid cell | 6.76e-25 | 108 |
common myeloid progenitor | 6.76e-25 | 108 |
myeloid lineage restricted progenitor cell | 3.61e-24 | 66 |
mesenchymal cell | 5.07e-24 | 354 |
macrophage dendritic cell progenitor | 5.34e-24 | 61 |
multi fate stem cell | 5.62e-24 | 427 |
granulocyte monocyte progenitor cell | 1.09e-23 | 67 |
monopoietic cell | 1.17e-23 | 59 |
monocyte | 1.17e-23 | 59 |
monoblast | 1.17e-23 | 59 |
promonocyte | 1.17e-23 | 59 |
leukocyte | 1.67e-23 | 136 |
somatic stem cell | 3.84e-23 | 433 |
hematopoietic lineage restricted progenitor cell | 5.37e-23 | 120 |
stem cell | 1.17e-22 | 441 |
nongranular leukocyte | 2.28e-22 | 115 |
myeloid leukocyte | 7.26e-22 | 72 |
motile cell | 2.56e-21 | 386 |
defensive cell | 2.65e-21 | 48 |
phagocyte | 2.65e-21 | 48 |
classical monocyte | 1.28e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-17 | 42 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.35e-27 | 108 |
hematopoietic system | 1.16e-26 | 98 |
blood island | 1.16e-26 | 98 |
lateral plate mesoderm | 5.63e-25 | 203 |
immune system | 2.25e-24 | 93 |
bone marrow | 2.19e-23 | 76 |
connective tissue | 4.60e-23 | 371 |
bone element | 1.71e-19 | 82 |
skeletal element | 2.07e-18 | 90 |
mesoderm | 7.44e-17 | 315 |
mesoderm-derived structure | 7.44e-17 | 315 |
presumptive mesoderm | 7.44e-17 | 315 |
skeletal system | 1.18e-16 | 100 |
musculoskeletal system | 8.50e-14 | 167 |