FFCP PHASE1:Hg19::chr19:16187271..16187283,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:16187271..16187283,+
|short_description=p4@TPM4
|description=CAGE_peak_4_at_TPM4_5end
|association_with_transcript=136bp_to_ENST00000300933,NM_003290,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7171 | |EntrezGene=7171 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12013 | |HGNC=12013 | ||
|TSSclassifier=strong | |||
|UniProt=P67936 | |UniProt=P67936 | ||
|association_with_transcript=136bp_to_ENST00000300933,NM_003290,uc002ndj.2_5end | |||
|cluster_id=chr19:16187271..16187283,+ | |||
|description=CAGE_peak_4_at_TPM4_5end | |||
|id=chr19:16187271..16187283,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.34e-25!180;CL:0000144!1.50e-23!625;CL:0002371!4.20e-23!591;CL:0000548!1.06e-21!679;CL:0000004!1.06e-21!679;CL:0000255!1.06e-21!679;CL:0000012!4.51e-21!682;CL:0000048!1.37e-14!430;CL:0000723!4.26e-14!436;CL:0000034!1.24e-13!444;CL:0000003!5.79e-12!722;CL:0000680!6.12e-12!57;CL:0000056!6.12e-12!57;CL:0000355!6.12e-12!57;CL:0000057!6.62e-12!75;CL:0000222!1.75e-11!119;CL:0000187!1.19e-10!54;CL:0000393!2.13e-09!60;CL:0000211!2.13e-09!60;CL:0000183!2.19e-09!59;CL:0000220!2.30e-09!246;CL:0002321!2.73e-09!248;CL:0000192!5.92e-08!42;CL:0000514!5.92e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000723;1.46e-07;61!CL:0000134;2.31e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,9.88e-15,427;CL:0000723,3.23e-14,433;CL:0000034,9.49e-14,441;CL:0000057,2.22e-12,76;CL:0000680,2.41e-12,58;CL:0000056,2.41e-12,58;CL:0000355,2.41e-12,58;CL:0000222,9.59e-12,121;CL:0000187,4.79e-11,55;CL:0000393,9.14e-10,61;CL:0000211,9.14e-10,61;CL:0002321,1.64e-09,250;CL:0000192,2.47e-08,43;CL:0000514,2.47e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;4.68e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.68e-16!83;UBERON:0002329!2.68e-16!83;UBERON:0003077!2.68e-16!83;UBERON:0003059!2.68e-16!83;UBERON:0007282!2.68e-16!83;UBERON:0009618!2.68e-16!83;UBERON:0007285!2.68e-16!83;UBERON:0004290!8.50e-13!70;UBERON:0000486!2.34e-12!82;UBERON:0005256!2.21e-11!143;UBERON:0004872!1.39e-10!84;UBERON:0002049!1.94e-10!79;UBERON:0007798!1.94e-10!79;UBERON:0001134!3.37e-10!61;UBERON:0002036!3.37e-10!61;UBERON:0003082!3.37e-10!61;UBERON:0002204!5.49e-10!167;UBERON:0002385!2.07e-09!63;UBERON:0001015!2.07e-09!63;UBERON:0000383!2.07e-09!63;UBERON:0004535!4.22e-09!110;UBERON:0001009!1.61e-08!113;UBERON:0000055!7.51e-08!69;UBERON:0000490!8.59e-08!138;UBERON:0001981!1.01e-07!60;UBERON:0007500!1.01e-07!60;UBERON:0004537!1.01e-07!60;UBERON:0006965!1.01e-07!60;UBERON:0002384!2.81e-07!375;UBERON:0000926!3.66e-07!448;UBERON:0004120!3.66e-07!448;UBERON:0006603!3.66e-07!448;UBERON:0003914!5.92e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.16e-13,71;UBERON:0003059,3.16e-13,71;UBERON:0007282,3.16e-13,71;UBERON:0004290,3.16e-13,71;UBERON:0009618,3.16e-13,71;UBERON:0007524,3.54e-13,73;UBERON:0000486,9.14e-13,83;UBERON:0003077,9.88e-13,72;UBERON:0007285,9.88e-13,72;UBERON:0007503,5.87e-12,78;UBERON:0000926,4.34e-11,315;UBERON:0004120,4.34e-11,315;UBERON:0006603,4.34e-11,315;UBERON:0001134,1.31e-10,62;UBERON:0002036,1.31e-10,62;UBERON:0003082,1.31e-10,62;UBERON:0002204,1.53e-10,167;UBERON:0004872,3.87e-10,83;UBERON:0000490,4.01e-10,148;UBERON:0002049,5.45e-10,78;UBERON:0007798,5.45e-10,78;UBERON:0002385,8.39e-10,64;UBERON:0001015,8.39e-10,64;UBERON:0000383,8.39e-10,64;UBERON:0004535,1.06e-08,109;UBERON:0003104,2.10e-08,160;UBERON:0009142,2.10e-08,160;UBERON:0005256,3.46e-08,122;UBERON:0001009,3.92e-08,112;UBERON:0000055,1.94e-07,68;UBERON:0007500,2.71e-07,59;UBERON:0001981,2.71e-07,59;UBERON:0004537,2.71e-07,59;UBERON:0006965,2.71e-07,59;UBERON:0002384,3.56e-07,371 | |||
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| ||
|short_description=p4@TPM4 | |||
}} | }} |
Latest revision as of 09:03, 16 September 2015
Short description: | p4@TPM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TPM4_5end |
Coexpression cluster: | NA |
Association with transcript: | 136bp_to_ENST00000300933, NM_003290, uc002ndj.2_5end |
EntrezGene: | TPM4 |
HGNC: | 12013 |
UniProt: | P67936 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 9.88e-15 | 427 |
somatic stem cell | 3.23e-14 | 433 |
stem cell | 9.49e-14 | 441 |
fibroblast | 2.22e-12 | 76 |
muscle precursor cell | 2.41e-12 | 58 |
myoblast | 2.41e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.41e-12 | 58 |
mesodermal cell | 9.59e-12 | 121 |
muscle cell | 4.79e-11 | 55 |
electrically responsive cell | 9.14e-10 | 61 |
electrically active cell | 9.14e-10 | 61 |
embryonic cell | 1.64e-09 | 250 |
smooth muscle cell | 2.47e-08 | 43 |
smooth muscle myoblast | 2.47e-08 | 43 |