FFCP PHASE1:Hg19::chr13:110959496..110959511,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1282 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2202 | |||
|TSSclassifier=strong | |||
|UniProt=F8WEC9,P02462 | |||
|association_with_transcript=0bp_to_ENST00000375815,ENST00000375820,ENST00000397198,NM_001845,uc001vqw.3,uc010agl.2_5end | |||
|cluster_id=chr13:110959496..110959511,- | |||
|coexpression_cluster_id=C566 | |||
|description=CAGE_peak_1_at_COL4A1_5end | |||
|id=chr13:110959496..110959511,- | |||
|ontology_enrichment_celltype=CL:0000222!1.54e-21!119;CL:0000055!7.98e-18!180;CL:0000183!6.98e-12!59;CL:0000220!1.15e-11!246;CL:0002321!1.60e-11!248;CL:0000213!2.09e-10!57;CL:0000215!2.09e-10!57;CL:0000680!6.18e-10!57;CL:0000056!6.18e-10!57;CL:0000355!6.18e-10!57;CL:0000187!1.83e-09!54;CL:0002078!2.95e-09!44;CL:0002139!3.09e-09!24;CL:0000115!3.50e-09!35;CL:0000393!5.77e-09!60;CL:0000211!5.77e-09!60;CL:0000192!7.31e-09!42;CL:0000514!7.31e-09!42;CL:0000057!2.00e-08!75;CL:1000449!2.97e-08!16;CL:0000359!1.98e-07!32;CL:0000136!5.73e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.79e-09;24!CL:1000449;1.43e-08;15!CL:0000115;2.05e-08;36!CL:0000136;2.31e-08;13!CL:0000359;4.39e-07;32!CL:0002681;6.10e-07;12!CL:0002584;6.10e-07;12!CL:1000497;6.13e-07;17!CL:0002518;6.13e-07;17!CL:0000213;6.19e-07;58!CL:0000215;6.19e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.98e-22,121;CL:0002321,5.40e-12,250;CL:0000213,6.23e-11,58;CL:0000215,6.23e-11,58;CL:0000680,6.23e-10,58;CL:0000056,6.23e-10,58;CL:0000355,6.23e-10,58;CL:0002078,8.64e-10,45;CL:0000115,9.60e-10,36;CL:0000187,1.86e-09,55;CL:0002139,2.82e-09,24;CL:0000393,5.68e-09,61;CL:0000211,5.68e-09,61;CL:0000057,5.97e-09,76;CL:0000192,7.81e-09,43;CL:0000514,7.81e-09,43;CL:1000449,1.44e-08,15;CL:0000359,1.85e-07,32;CL:0000136,5.37e-07,15;CL:0002681,6.14e-07,12;CL:0002584,6.14e-07,12;CL:1000497,6.35e-07,17;CL:0002518,6.35e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.13e-22!79;UBERON:0007798!7.13e-22!79;UBERON:0003914!1.78e-20!118;UBERON:0004872!5.00e-19!84;UBERON:0001009!5.51e-19!113;UBERON:0004535!2.40e-18!110;UBERON:0000055!4.27e-18!69;UBERON:0000477!8.00e-17!286;UBERON:0004111!1.18e-15!241;UBERON:0000119!1.21e-15!312;UBERON:0005256!8.96e-15!143;UBERON:0001981!1.06e-14!60;UBERON:0007500!1.06e-14!60;UBERON:0004537!1.06e-14!60;UBERON:0006965!1.06e-14!60;UBERON:0000483!1.16e-14!309;UBERON:0000468!5.45e-14!659;UBERON:0000475!1.38e-13!365;UBERON:0000025!3.05e-12!194;UBERON:0000490!5.78e-12!138;UBERON:0000481!7.16e-12!347;UBERON:0002100!8.40e-12!216;UBERON:0002385!2.26e-11!63;UBERON:0001015!2.26e-11!63;UBERON:0000383!2.26e-11!63;UBERON:0003103!4.05e-11!69;UBERON:0001134!4.59e-11!61;UBERON:0002036!4.59e-11!61;UBERON:0003082!4.59e-11!61;UBERON:0000467!4.32e-10!625;UBERON:0000480!7.52e-10!626;UBERON:0000914!1.01e-09!83;UBERON:0002329!1.01e-09!83;UBERON:0003077!1.01e-09!83;UBERON:0003059!1.01e-09!83;UBERON:0007282!1.01e-09!83;UBERON:0009618!1.01e-09!83;UBERON:0007285!1.01e-09!83;UBERON:0004290!1.31e-09!70;UBERON:0001637!2.93e-09!42;UBERON:0003509!2.93e-09!42;UBERON:0004572!2.93e-09!42;UBERON:0000486!4.49e-09!82;UBERON:0004876!8.49e-09!20;UBERON:0003104!8.88e-09!238;UBERON:0009142!8.88e-09!238;UBERON:0000353!2.33e-08!17;UBERON:0006555!2.61e-08!17;UBERON:0005103!2.61e-08!17;UBERON:0000083!2.61e-08!17;UBERON:0009201!2.61e-08!17;UBERON:0004819!2.61e-08!17;UBERON:0006553!2.61e-08!17;UBERON:0003074!2.61e-08!17;UBERON:0003060!2.61e-08!17;UBERON:0000080!2.93e-08!18;UBERON:0002120!2.93e-08!18;UBERON:0004875!2.93e-08!18;UBERON:0005721!2.93e-08!18;UBERON:0005754!2.93e-08!18;UBERON:0007297!2.93e-08!18;UBERON:0004211!2.97e-08!16;UBERON:0001285!2.97e-08!16;UBERON:0007684!2.97e-08!16;UBERON:0003220!2.97e-08!16;UBERON:0004208!2.97e-08!16;UBERON:0003887!3.86e-08!21;UBERON:0003886!1.02e-07!63;UBERON:0007100!1.49e-07!27;UBERON:0003064!3.68e-07!37;UBERON:0000948!5.27e-07!24;UBERON:0005498!5.27e-07!24;UBERON:0004140!5.27e-07!24;UBERON:0009881!5.27e-07!24;UBERON:0004141!5.27e-07!24;UBERON:0003084!5.27e-07!24;UBERON:0007005!5.27e-07!24;UBERON:0004139!5.27e-07!24;UBERON:0004291!5.27e-07!24;UBERON:0002417!7.98e-07!61;UBERON:0000916!7.98e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002049;3.97e-09;75!UBERON:0007798;3.97e-09;75!UBERON:0000055;4.49e-09;65!UBERON:0003914;7.84e-09;74!UBERON:0006555;1.43e-08;15!UBERON:0004819;1.43e-08;15!UBERON:0001285;1.43e-08;15!UBERON:0007684;1.43e-08;15!UBERON:0000353;5.45e-08;15!UBERON:0007500;1.08e-07;56!UBERON:0001981;1.08e-07;56!UBERON:0004537;1.08e-07;56!UBERON:0001637;1.13e-07;42!UBERON:0003509;1.13e-07;42!UBERON:0004572;1.13e-07;42!UBERON:0007100;2.27e-07;25!UBERON:0001225;6.10e-07;12!UBERON:0008987;6.10e-07;12!UBERON:0000948;8.03e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,2.39e-21,78;UBERON:0007798,2.39e-21,78;UBERON:0003914,9.19e-21,117;UBERON:0001009,1.06e-18,112;UBERON:0004872,1.52e-18,83;UBERON:0004535,4.61e-18,109;UBERON:0000055,1.36e-17,68;UBERON:0004111,1.99e-15,240;UBERON:0000119,2.78e-15,309;UBERON:0003104,6.87e-15,160;UBERON:0009142,6.87e-15,160;UBERON:0000483,2.61e-14,306;UBERON:0007500,3.47e-14,59;UBERON:0001981,3.47e-14,59;UBERON:0004537,3.47e-14,59;UBERON:0006965,3.47e-14,59;UBERON:0007503,1.39e-12,78;UBERON:0005256,5.10e-12,122;UBERON:0000025,8.45e-12,192;UBERON:0000490,2.14e-11,148;UBERON:0002385,2.26e-11,64;UBERON:0001015,2.26e-11,64;UBERON:0000383,2.26e-11,64;UBERON:0002100,4.03e-11,199;UBERON:0003103,4.46e-11,68;UBERON:0001134,4.61e-11,62;UBERON:0002036,4.61e-11,62;UBERON:0003082,4.61e-11,62;UBERON:0002329,1.26e-09,71;UBERON:0003059,1.26e-09,71;UBERON:0007282,1.26e-09,71;UBERON:0004290,1.26e-09,71;UBERON:0009618,1.26e-09,71;UBERON:0007524,1.42e-09,73;UBERON:0003077,2.29e-09,72;UBERON:0007285,2.29e-09,72;UBERON:0001637,2.68e-09,42;UBERON:0003509,2.68e-09,42;UBERON:0004572,2.68e-09,42;UBERON:0000486,4.21e-09,83;UBERON:0006555,1.33e-08,16;UBERON:0004819,1.33e-08,16;UBERON:0004211,1.44e-08,15;UBERON:0009773,1.44e-08,15;UBERON:0001231,1.44e-08,15;UBERON:0001285,1.44e-08,15;UBERON:0007684,1.44e-08,15;UBERON:0004208,1.44e-08,15;UBERON:0000353,5.47e-08,15;UBERON:0007100,1.38e-07,27;UBERON:0000948,4.94e-07,24;UBERON:0005498,4.94e-07,24;UBERON:0004140,4.94e-07,24;UBERON:0009881,4.94e-07,24;UBERON:0004141,4.94e-07,24;UBERON:0003084,4.94e-07,24;UBERON:0007005,4.94e-07,24;UBERON:0004139,4.94e-07,24;UBERON:0004291,4.94e-07,24;UBERON:0001225,6.14e-07,12;UBERON:0008987,6.14e-07,12;UBERON:0002417,7.65e-07,60;UBERON:0000916,7.65e-07,60;UBERON:0000922,8.02e-07,592 | |||
|phase1_expression=626.79040848342,694.113898454567,1036.29677891358,782.57319312148,1215.73417684222,535.615853797626,1453.9413006861,185.093922914061,830.570297675486,538.157320938304,207.944748055783,93.7113486438439,175.141273543693,27.1048312982502,55.011964370834,125.05247724003,121.141600132819,153.365118981348,140.524646051666,90.8633408606695,123.420418202773,125.068433869757,139.396925732825,63.2359843836725,358.549778682757,0,0,0.0787107813136792,0,0,1.70297735647684,15.6301608161418,14.457884101356,5.54631015250181,0,0,0,5.53995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,8.47559303686716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,148.722188451517,92.5567186391018,518.354825713672,88.9140314866033,212.567274109617,49.9720490414842,19.8821486762775,54.0164706035926,66.7415809178319,154.988848826332,205.006389807756,99.5440973782616,13.1146303785315,5.19098219898201,0,0.348259474598534,0.132957960518865,0,0,0,147.084181451362,106.669089793159,289.862318842341,59.357333902021,224.01269893609,339.220545712103,264.169637702529,744.757099926006,592.350827373372,1743.55967189117,1444.94876047051,576.286256134632,1672.06915626251,240.819317626544,1392.63400840874,173.598671784251,92.2815721493558,115.201544534439,93.5231488541888,94.9265659568129,222.773320619375,0,0,60.6170732478123,1201.18120724758,407.496986536618,74.413959617029,266.758057296397,52.8455889475552,250.622887263611,1458.19128166777,1799.19309815476,210.689870965642,653.346759537987,510.654985326445,2877.1533421025,1426.035413088,13.1220001826926,28.7187270683895,41.6444429727448,29.8897361103602,5.40198693761318,6.79866366346152,4.6348766211742,14.9032545016072,6.1417158655884,27.3813320115778,87.912211438872,307.352793093246,949.298300501362,590.704112572948,15.6552585977282,15.8900520237394,11.3596287348515,54.4332249892239,139.451947088554,335.481585538431,667.548397896724,276.977597503603,236.408029422154,234.608614583635,156.647552156058,49.1560564467354,375.639907386527,221.106825321929,307.172924679105,328.557581403562,158.27597645106,94.1670463110722,31.8442731933059,301.403144046606,167.651491450793,206.863922618795,32.8543450377605,76.6416598860245,30.4012871112344,14.3928973232923,15.9035721985782,40.784073947201,30.5800112295343,36.5865233769661,20.8037094673223,20.3384392028761,21.2269509603652,42.821825619269,3.71494342425583,2.16563844500876,11.2391460037852,10.9580048550766,9.64044119533928,10.2573394641126,13.7264049778216,9.96536600266606,9.43819157121151,10.203516186518,5.38646019724947,1039.3228801115,1853.99624968155,526.814734504192,718.8725986753,5.07020139287323,0,73.2579484284941,0,0,135.710137946134,14.3772873885299,3.37205259772859,10.4550131308096,17.9621583607547,3.58389135841357,0,129.898207822746,82.5424483422547,1992.54294987613,1617.77041361059,1068.10757751424,1168.92151132937,0,0,0,0,0,45.9295786535207,199.394786172046,46.9275571872299,26.0615301065289,14.8223308642121,51.7566616873035,0,0,3.10992173311158,2.01767934783746,2.5248486685276,18.414389344729,41.254749960294,15.2382681373061,201.865486306792,44.9356143113524,56.4644948746565,11.1472308725925,701.155670411541,757.262639563408,369.551622251767,750.810125121173,500.719024192635,576.496477243192,1674.34638201834,799.817189848405,22.8914563093306,62.4136180902424,24.7772626484972,861.728367777655,652.773791285906,441.256820514492,581.439088964317,977.327859042001,267.679733051499,282.448696304832,298.935976299901,453.477488001811,0,0,0,1486.63260346978,963.691641648216,15.690059554479,194.151732241224,92.4643451476725,145.755624077275,0,0,0,0.128343036279748,142.292989564579,54.6587386202011,47.1706175794394,51.7625259883138,44.0177738640683,0,0,0,86.6201931537128,35.5121069952371,17.6322265404828,418.229402538453,231.243969481122,254.058590619669,180.632061918764,110.447218600073,284.259380069981,156.244337651682,474.921302952837,178.284985979827,16.9423048212762,3431.0236822196,1960.72152365523,0,0,0,6.36567900037145,36.6157966923094,17.8410273064511,328.990953167698,675.693068387339,282.063394905239,365.580992826515,426.763845721631,819.55072822668,316.130481527831,13.416243360831,53.090955868625,23.1598579958942,92.4272883946846,21.3827096366325,0,202.311028536014,4.23572549105123,103.792261140804,104.884512771869,70.807184078089,569.865111102061,519.622479443486,669.050353107858,770.153713922684,880.089481708798,1842.48082194853,690.070162306824,954.132433255354,3422.30273719752,831.805563259628,1003.88123748356,186.314555595923,160.397669723244,428.944030047694,0,0,24.6192120111734,221.081871201602,49.7828943836384,259.251185305669,0,0,193.52748630471,31.8529520557895,367.966199343125,24.8443746010753,72.5568986609975,89.7996497147858,84.9073286504708,33.8373771335062,58.1516942596056,87.3572931015034,141.917064820899,57.0232957995374,100.515405231951,125.953747232155,14.4655626623436,2.789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| |||
|short_description=p1@COL4A1 | |||
}} |
Latest revision as of 12:39, 16 September 2015
Short description: | p1@COL4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL4A1_5end |
Coexpression cluster: | C566_Pericytes_Renal_hepatic_Fibroblast_Endothelial_Hepatic_Lens |
Association with transcript: | 0bp_to_ENST00000375815, ENST00000375820, ENST00000397198, NM_001845, uc001vqw.3, uc010agl.2_5end |
EntrezGene: | COL4A1 |
HGNC: | 2202 |
UniProt: | F8WEC9P02462 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.98e-22 | 121 |
embryonic cell | 5.40e-12 | 250 |
lining cell | 6.23e-11 | 58 |
barrier cell | 6.23e-11 | 58 |
muscle precursor cell | 6.23e-10 | 58 |
myoblast | 6.23e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.23e-10 | 58 |
meso-epithelial cell | 8.64e-10 | 45 |
endothelial cell | 9.60e-10 | 36 |
muscle cell | 1.86e-09 | 55 |
endothelial cell of vascular tree | 2.82e-09 | 24 |
electrically responsive cell | 5.68e-09 | 61 |
electrically active cell | 5.68e-09 | 61 |
fibroblast | 5.97e-09 | 76 |
smooth muscle cell | 7.81e-09 | 43 |
smooth muscle myoblast | 7.81e-09 | 43 |
epithelial cell of nephron | 1.44e-08 | 15 |
vascular associated smooth muscle cell | 1.85e-07 | 32 |
fat cell | 5.37e-07 | 15 |
kidney cortical cell | 6.14e-07 | 12 |
renal cortical epithelial cell | 6.14e-07 | 12 |
kidney cell | 6.35e-07 | 17 |
kidney epithelial cell | 6.35e-07 | 17 |