FFCP PHASE1:Hg19::chr8:134584152..134584213,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:134584152..134584213,- to FFCP PHASE1:Hg19::chr8:134584152..134584213,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6482 | |EntrezGene=6482 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10862 | |HGNC=10862 | ||
|TSSclassifier=strong | |||
|UniProt=Q11201,E5RGL4 | |UniProt=Q11201,E5RGL4 | ||
|association_with_transcript=0bp_to_ENST00000319914,ENST00000517668,ENST00000521180,ENST00000522873,NM_003033,NM_173344,uc003yuk.2,uc003yum.2_5end | |||
|cluster_id=chr8:134584152..134584213,- | |||
|description=CAGE_peak_1_at_ST3GAL1_5end | |||
|id=chr8:134584152..134584213,- | |||
|ontology_enrichment_celltype=CL:0000766!6.77e-27!76;CL:0002057!6.92e-24!42;CL:0000839!1.07e-22!70;CL:0002194!3.73e-22!63;CL:0000576!3.73e-22!63;CL:0000040!3.73e-22!63;CL:0000559!3.73e-22!63;CL:0000860!6.57e-21!45;CL:0000557!7.33e-21!71;CL:0002009!4.71e-20!65;CL:0000763!4.59e-17!112;CL:0000049!4.59e-17!112;CL:0000738!8.74e-09!140;CL:0000048!5.43e-08!430;CL:0002087!7.83e-08!119;CL:0000037!1.19e-07!172;CL:0000566!1.19e-07!172;CL:0002031!2.04e-07!124;CL:0000723!3.19e-07!436;CL:0002032!3.20e-07!165;CL:0000837!3.20e-07!165;CL:0000988!4.76e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.58e-19;33!CL:0002057;9.58e-19;33!CL:0000473;5.62e-17;39!CL:0000234;5.62e-17;39!CL:0000576;1.95e-15;48!CL:0000766;1.13e-13;69!CL:0000763;1.01e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.65e-29,72;CL:0000473,2.52e-25,48;CL:0000234,2.52e-25,48;CL:0000839,8.23e-25,66;CL:0002194,2.01e-24,59;CL:0000576,2.01e-24,59;CL:0000040,2.01e-24,59;CL:0000559,2.01e-24,59;CL:0000860,6.87e-24,42;CL:0002057,6.87e-24,42;CL:0000557,7.71e-23,67;CL:0002009,4.08e-22,61;CL:0000763,3.60e-18,108;CL:0000049,3.60e-18,108;CL:0000738,2.00e-09,136;CL:0002087,1.79e-08,115;CL:0000048,2.13e-08,427;CL:0000037,4.01e-08,168;CL:0002031,5.00e-08,120;CL:0002032,1.10e-07,161;CL:0000837,1.10e-07,161;CL:0000723,1.33e-07,433;CL:0000988,1.61e-07,177;CL:0000034,9.18e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.72e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.43e-33!216;UBERON:0002193!4.10e-21!112;UBERON:0002390!1.05e-19!102;UBERON:0003061!1.05e-19!102;UBERON:0001009!7.71e-18!113;UBERON:0002405!1.39e-17!115;UBERON:0002371!5.59e-17!80;UBERON:0004535!2.04e-16!110;UBERON:0001474!1.87e-15!86;UBERON:0000926!4.35e-14!448;UBERON:0004120!4.35e-14!448;UBERON:0006603!4.35e-14!448;UBERON:0002204!9.07e-14!167;UBERON:0004872!9.52e-13!84;UBERON:0004765!5.85e-11!101;UBERON:0001434!5.85e-11!101;UBERON:0003914!2.65e-10!118;UBERON:0000055!4.15e-10!69;UBERON:0002049!4.60e-09!79;UBERON:0007798!4.60e-09!79;UBERON:0001981!7.77e-09!60;UBERON:0007500!7.77e-09!60;UBERON:0004537!7.77e-09!60;UBERON:0006965!7.77e-09!60;UBERON:0007100!3.85e-08!27;UBERON:0001637!1.76e-07!42;UBERON:0003509!1.76e-07!42;UBERON:0004572!1.76e-07!42;UBERON:0004573!2.47e-07!33;UBERON:0004571!2.47e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.11e-08;25!UBERON:0004573;9.27e-07;33!UBERON:0004571;9.27e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.71e-35,203;UBERON:0000926,1.17e-23,315;UBERON:0004120,1.17e-23,315;UBERON:0006603,1.17e-23,315;UBERON:0002193,1.63e-22,108;UBERON:0002390,3.90e-21,98;UBERON:0003061,3.90e-21,98;UBERON:0002371,1.70e-18,76;UBERON:0002405,4.87e-18,93;UBERON:0001009,1.11e-17,112;UBERON:0001474,8.34e-17,82;UBERON:0004535,2.92e-16,109;UBERON:0002204,1.15e-13,167;UBERON:0004765,3.03e-13,90;UBERON:0004872,1.28e-12,83;UBERON:0001434,5.56e-11,100;UBERON:0003914,1.97e-10,117;UBERON:0000055,5.78e-10,68;UBERON:0002049,6.35e-09,78;UBERON:0007798,6.35e-09,78;UBERON:0007500,1.07e-08,59;UBERON:0001981,1.07e-08,59;UBERON:0004537,1.07e-08,59;UBERON:0006965,1.07e-08,59;UBERON:0007100,3.84e-08,27;UBERON:0001637,1.76e-07,42;UBERON:0003509,1.76e-07,42;UBERON:0004572,1.76e-07,42;UBERON:0004573,2.47e-07,33;UBERON:0004571,2.47e-07,33 | |||
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| ||
|short_description=p1@ST3GAL1 | |||
}} | }} |
Latest revision as of 16:37, 16 September 2015
Short description: | p1@ST3GAL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ST3GAL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000319914, ENST00000517668, ENST00000521180, ENST00000522873, NM_003033, NM_173344, uc003yuk.2, uc003yum.2_5end |
EntrezGene: | ST3GAL1 |
HGNC: | 10862 |
UniProt: | Q11201E5RGL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.65e-29 | 72 |
defensive cell | 2.52e-25 | 48 |
phagocyte | 2.52e-25 | 48 |
myeloid lineage restricted progenitor cell | 8.23e-25 | 66 |
monopoietic cell | 2.01e-24 | 59 |
monocyte | 2.01e-24 | 59 |
monoblast | 2.01e-24 | 59 |
promonocyte | 2.01e-24 | 59 |
classical monocyte | 6.87e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.87e-24 | 42 |
granulocyte monocyte progenitor cell | 7.71e-23 | 67 |
macrophage dendritic cell progenitor | 4.08e-22 | 61 |
myeloid cell | 3.60e-18 | 108 |
common myeloid progenitor | 3.60e-18 | 108 |
leukocyte | 2.00e-09 | 136 |
nongranular leukocyte | 1.79e-08 | 115 |
multi fate stem cell | 2.13e-08 | 427 |
hematopoietic stem cell | 4.01e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 5.00e-08 | 120 |
hematopoietic oligopotent progenitor cell | 1.10e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-07 | 161 |
somatic stem cell | 1.33e-07 | 433 |
hematopoietic cell | 1.61e-07 | 177 |
stem cell | 9.18e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.71e-35 | 203 |
mesoderm | 1.17e-23 | 315 |
mesoderm-derived structure | 1.17e-23 | 315 |
presumptive mesoderm | 1.17e-23 | 315 |
hemolymphoid system | 1.63e-22 | 108 |
hematopoietic system | 3.90e-21 | 98 |
blood island | 3.90e-21 | 98 |
bone marrow | 1.70e-18 | 76 |
immune system | 4.87e-18 | 93 |
circulatory system | 1.11e-17 | 112 |
bone element | 8.34e-17 | 82 |
cardiovascular system | 2.92e-16 | 109 |
musculoskeletal system | 1.15e-13 | 167 |
skeletal element | 3.03e-13 | 90 |
splanchnic layer of lateral plate mesoderm | 1.28e-12 | 83 |
skeletal system | 5.56e-11 | 100 |
epithelial tube | 1.97e-10 | 117 |
vessel | 5.78e-10 | 68 |
vasculature | 6.35e-09 | 78 |
vascular system | 6.35e-09 | 78 |
epithelial tube open at both ends | 1.07e-08 | 59 |
blood vessel | 1.07e-08 | 59 |
blood vasculature | 1.07e-08 | 59 |
vascular cord | 1.07e-08 | 59 |
primary circulatory organ | 3.84e-08 | 27 |
artery | 1.76e-07 | 42 |
arterial blood vessel | 1.76e-07 | 42 |
arterial system | 1.76e-07 | 42 |
systemic artery | 2.47e-07 | 33 |
systemic arterial system | 2.47e-07 | 33 |