FFCP PHASE1:Hg19::chr3:171757429..171757446,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:171757429..171757446,+
|short_description=p3@FNDC3B
|description=CAGE_peak_3_at_FNDC3B_5end
|association_with_transcript=-2bp_to_ENST00000469491_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64778 | |EntrezGene=64778 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24670 | |HGNC=24670 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000469491_5end | |||
|cluster_id=chr3:171757429..171757446,+ | |||
|description=CAGE_peak_3_at_FNDC3B_5end | |||
|id=chr3:171757429..171757446,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.51e-17!76;CL:0002057!5.52e-15!42;CL:0002009!7.84e-15!65;CL:0000557!7.89e-15!71;CL:0002194!3.87e-14!63;CL:0000576!3.87e-14!63;CL:0000040!3.87e-14!63;CL:0000559!3.87e-14!63;CL:0000860!7.13e-14!45;CL:0000839!2.60e-12!70;CL:0000048!1.12e-09!430;CL:0000723!1.25e-08!436;CL:0000034!1.91e-08!444;CL:0000763!2.18e-08!112;CL:0000049!2.18e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.68e-16;33!CL:0002057;5.68e-16;33!CL:0000473;1.62e-13;39!CL:0000234;1.62e-13;39!CL:0000576;1.42e-09;48!CL:0000766;4.90e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.17e-18,72;CL:0002009,1.12e-15,61;CL:0000557,1.34e-15,67;CL:0000473,3.42e-15,48;CL:0000234,3.42e-15,48;CL:0000860,5.16e-15,42;CL:0002057,5.16e-15,42;CL:0002194,5.72e-15,59;CL:0000576,5.72e-15,59;CL:0000040,5.72e-15,59;CL:0000559,5.72e-15,59;CL:0000839,5.67e-13,66;CL:0000048,8.42e-10,427;CL:0000723,8.66e-09,433;CL:0000763,1.05e-08,108;CL:0000049,1.05e-08,108;CL:0000034,1.34e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;9.12e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.18e-18!216;UBERON:0000926!1.68e-18!448;UBERON:0004120!1.68e-18!448;UBERON:0006603!1.68e-18!448;UBERON:0002204!1.89e-15!167;UBERON:0002405!6.41e-15!115;UBERON:0002371!1.53e-12!80;UBERON:0001474!2.01e-12!86;UBERON:0004765!1.31e-11!101;UBERON:0001434!1.31e-11!101;UBERON:0002193!1.45e-11!112;UBERON:0001009!8.28e-11!113;UBERON:0000480!1.30e-10!626;UBERON:0000467!2.73e-10!625;UBERON:0004535!2.98e-10!110;UBERON:0002390!3.41e-10!102;UBERON:0003061!3.41e-10!102;UBERON:0004872!6.08e-10!84;UBERON:0000468!9.49e-10!659;UBERON:0000055!1.24e-08!69;UBERON:0002049!1.39e-08!79;UBERON:0007798!1.39e-08!79;UBERON:0003914!5.11e-08!118;UBERON:0001637!4.27e-07!42;UBERON:0003509!4.27e-07!42;UBERON:0004572!4.27e-07!42;UBERON:0001981!8.61e-07!60;UBERON:0007500!8.61e-07!60;UBERON:0004537!8.61e-07!60;UBERON:0006965!8.61e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.50e-21,315;UBERON:0004120,2.50e-21,315;UBERON:0006603,2.50e-21,315;UBERON:0003081,4.01e-21,203;UBERON:0002204,6.90e-15,167;UBERON:0002405,2.46e-13,93;UBERON:0002371,3.83e-13,76;UBERON:0001474,5.66e-13,82;UBERON:0004765,3.11e-12,90;UBERON:0002193,6.16e-12,108;UBERON:0001434,3.01e-11,100;UBERON:0001009,1.12e-10,112;UBERON:0002390,1.50e-10,98;UBERON:0003061,1.50e-10,98;UBERON:0004535,4.04e-10,109;UBERON:0004872,7.58e-10,83;UBERON:0000055,1.54e-08,68;UBERON:0002049,1.74e-08,78;UBERON:0007798,1.74e-08,78;UBERON:0003914,2.85e-08,117;UBERON:0001637,4.16e-07,42;UBERON:0003509,4.16e-07,42;UBERON:0004572,4.16e-07,42 | |||
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| ||
|short_description=p3@FNDC3B | |||
}} | }} |
Latest revision as of 17:50, 16 September 2015
Short description: | p3@FNDC3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FNDC3B_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000469491_5end |
EntrezGene: | FNDC3B |
HGNC: | 24670 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.17e-18 | 72 |
macrophage dendritic cell progenitor | 1.12e-15 | 61 |
granulocyte monocyte progenitor cell | 1.34e-15 | 67 |
defensive cell | 3.42e-15 | 48 |
phagocyte | 3.42e-15 | 48 |
classical monocyte | 5.16e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.16e-15 | 42 |
monopoietic cell | 5.72e-15 | 59 |
monocyte | 5.72e-15 | 59 |
monoblast | 5.72e-15 | 59 |
promonocyte | 5.72e-15 | 59 |
myeloid lineage restricted progenitor cell | 5.67e-13 | 66 |
multi fate stem cell | 8.42e-10 | 427 |
somatic stem cell | 8.66e-09 | 433 |
myeloid cell | 1.05e-08 | 108 |
common myeloid progenitor | 1.05e-08 | 108 |
stem cell | 1.34e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.50e-21 | 315 |
mesoderm-derived structure | 2.50e-21 | 315 |
presumptive mesoderm | 2.50e-21 | 315 |
lateral plate mesoderm | 4.01e-21 | 203 |
musculoskeletal system | 6.90e-15 | 167 |
immune system | 2.46e-13 | 93 |
bone marrow | 3.83e-13 | 76 |
bone element | 5.66e-13 | 82 |
skeletal element | 3.11e-12 | 90 |
hemolymphoid system | 6.16e-12 | 108 |
skeletal system | 3.01e-11 | 100 |
circulatory system | 1.12e-10 | 112 |
hematopoietic system | 1.50e-10 | 98 |
blood island | 1.50e-10 | 98 |
cardiovascular system | 4.04e-10 | 109 |
splanchnic layer of lateral plate mesoderm | 7.58e-10 | 83 |
vessel | 1.54e-08 | 68 |
vasculature | 1.74e-08 | 78 |
vascular system | 1.74e-08 | 78 |
epithelial tube | 2.85e-08 | 117 |
artery | 4.16e-07 | 42 |
arterial blood vessel | 4.16e-07 | 42 |
arterial system | 4.16e-07 | 42 |