FFCP PHASE1:Hg19::chr13:36919676..36919723,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23111 | |EntrezGene=23111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18514 | |HGNC=18514 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=47bp_to_ENST00000476377_5end | |association_with_transcript=47bp_to_ENST00000476377_5end | ||
|cluster_id=chr13:36919676..36919723,- | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_5_at_SPG20_5end | |description=CAGE_peak_5_at_SPG20_5end | ||
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|ontology_enrichment_celltype=CL:0002057!3.33e-18!42;CL:0000860!1.37e-16!45;CL:0000839!1.90e-14!70;CL:0000557!5.81e-13!71;CL:0002194!7.24e-12!63;CL:0000576!7.24e-12!63;CL:0000040!7.24e-12!63;CL:0000559!7.24e-12!63;CL:0000763!7.72e-12!112;CL:0000049!7.72e-12!112;CL:0000766!8.00e-12!76;CL:0002009!8.28e-12!65;CL:0000034!2.04e-08!444;CL:0000048!2.93e-07!430;CL:0000723!5.40e-07!436;CL:0000077!8.96e-07!19 | |ontology_enrichment_celltype=CL:0002057!3.33e-18!42;CL:0000860!1.37e-16!45;CL:0000839!1.90e-14!70;CL:0000557!5.81e-13!71;CL:0002194!7.24e-12!63;CL:0000576!7.24e-12!63;CL:0000040!7.24e-12!63;CL:0000559!7.24e-12!63;CL:0000763!7.72e-12!112;CL:0000049!7.72e-12!112;CL:0000766!8.00e-12!76;CL:0002009!8.28e-12!65;CL:0000034!2.04e-08!444;CL:0000048!2.93e-07!430;CL:0000723!5.40e-07!436;CL:0000077!8.96e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.55e-16;33!CL:0002057;1.55e-16;33!CL:0000576;2.45e-12;48!CL:0000473;1.01e-10;39!CL:0000234;1.01e-10;39!CL:0000766;1.56e-08;69!CL:0000077;4.79e-07;19 | |ontology_enrichment_celltype_v019=CL:0000860;1.55e-16;33!CL:0002057;1.55e-16;33!CL:0000576;2.45e-12;48!CL:0000473;1.01e-10;39!CL:0000234;1.01e-10;39!CL:0000766;1.56e-08;69!CL:0000077;4.79e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.90e-21,42;CL:0002057,3.90e-21,42;CL:0000839,1.22e-19,66;CL:0000557,7.05e-18,67;CL:0000766,1.90e-17,72;CL:0000473,3.49e-17,48;CL:0000234,3.49e-17,48;CL:0002194,3.59e-16,59;CL:0000576,3.59e-16,59;CL:0000040,3.59e-16,59;CL:0000559,3.59e-16,59;CL:0000763,4.03e-16,108;CL:0000049,4.03e-16,108;CL:0002009,4.80e-16,61;CL:0000034,1.33e-11,441;CL:0000048,6.77e-10,427;CL:0002320,1.15e-09,361;CL:0000723,1.20e-09,433;CL:0000134,6.19e-09,354;CL:0000219,3.75e-08,386;CL:0000077,6.18e-07,19 | |||
|ontology_enrichment_development_v019=CL:0002057;3.15e-15;42 | |ontology_enrichment_development_v019=CL:0002057;3.15e-15;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.66e-13!80;UBERON:0001474!9.23e-12!86;UBERON:0004765!3.82e-10!101;UBERON:0001434!3.82e-10!101;UBERON:0002204!8.37e-09!167 | |ontology_enrichment_uberon=UBERON:0002371!6.66e-13!80;UBERON:0001474!9.23e-12!86;UBERON:0004765!3.82e-10!101;UBERON:0001434!3.82e-10!101;UBERON:0002204!8.37e-09!167 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.41e-18,76;UBERON:0004765,3.68e-17,90;UBERON:0001474,6.64e-17,82;UBERON:0001434,4.06e-15,100;UBERON:0002405,1.08e-11,93;UBERON:0002204,2.68e-11,167;UBERON:0002390,4.89e-10,98;UBERON:0003061,4.89e-10,98;UBERON:0000926,6.04e-10,315;UBERON:0004120,6.04e-10,315;UBERON:0006603,6.04e-10,315;UBERON:0002384,1.53e-09,371;UBERON:0002193,6.54e-08,108 | |||
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|phase1_expression=3.27021082687002,3.42560838225573,5.77913056793482,2.00146596706261,9.38618298297304,5.23403114460221,7.59899634504932,1.89515962028049,2.35067065379855,0,0,0.218441372130172,0,1.48519623552056,2.98257638155124,0.672325146451775,0,0,0.487932798790507,0.738726348460727,0.408001382488506,0.940364164434263,0,0.821246550437305,0,0.458480434487708,0.328402357799783,0.393553906568396,4.32700704533794,3.83829398097213,2.16742572642506,0,0.30120591877825,1.84877005083394,0,0,3.81680571135301,4.9859586767869,4.01088894940283,5.4252717678963,0,0,0,1.45398238779565,0.755751887377619,0.727752183563449,2.09186133215116,3.70051099219643,4.02618282163635,12.3707728698525,11.2710710872804,15.1348627128695,75.4993040813195,56.1571674717929,48.753535173963,1.88242339542605,4.91231070104122,6.29225756446237,78.0513925545802,86.0089792563931,71.6057580894926,1.64925650093358,1.79517291859469,1.27867425159808,10.447532590629,14.1846306172785,8.09668923694247,7.03496262718881,8.86520961314342,8.68755378820467,9.6863920421339,22.833213431229,14.5572698222807,1.26753171787165,1.91343869968539,2.93522103711726,2.47122988522289,1.20141514273205,0.803627933485401,0.285012743741249,1.19350006319454,2.19196984517561,0,0,0,0,0,0.574752439954483,0,0,0,0,0,1.32171328579026,1.68152568894461,2.63384084775077,1.37696839079683,0,0.616804496998528,0,0.32592226663359,0.473447805734733,0,0,0.294605907474837,0.221533894583621,0,0.128091319725675,0,0,0.276350017785848,0,0.444859689486181,0.535081656179426,1.04535523804977,0,0.766440987203842,1.71813722741315,0.759059076058509,0,0,0,0.451725357233318,0,0,0,0,0.604820229674197,0.267440195783507,0.289648807765598,0,1.34140171940727,1.02290049474824,1.0843174571537,0.50133791063589,1.30361867064741,0,1.45990461090791,0.850813354476611,0,0.614843499851882,1.83370705696798,0.728590576585084,0.741568885568859,1.62273696827342,1.39303789839414,2.39324328933957,2.14641561874808,1.14398982156026,1.48583000531826,0.596287222100115,0,0.347140501607594,1.69592382577203,0.419499436209906,0.825354125820202,1.67195973229448,0.516833518338658,0.35576626268671,0.66944122552934,0,0,0.24406205754817,2.20597848207521,0.81014194788176,0.714397826272638,0,0.225222960966644,0,0,0.183201743930407,0,0,0.436094052142534,0.993943903390637,0.506522046658319,11.51959873075,4.58938593198102,0.354668382198357,2.24271040056923,0,0,0.622422070799533,1.75123873690594,0.326923806226917,0.605429710579726,0.576175924479999,1.40592859100278,0.936480230490962,0,0.747243402759005,0.352303495931295,0.485618833104395,0.98315564691574,1.83738754129404,0.245668634623536,2.37649296704261,0,0.741800787835671,0,1.43723628363248,0,0,0.831192346452549,1.31693286264251,0,0.300476117813194,1.36118619792025,1.97328599257748,1.06778694409284,0.635795703478686,0.600182192168805,1.13357782162283,1.03056216018252,0.744467425326359,0.337552664482532,0.194874010322397,1.51460264546469,0.736399189138395,1.2931684545505,2.4850671476163,0.503760491138201,0,0.193260853163297,0.545492241181669,0,1.82960559194393,1.59035721985782,2.90484857173796,2.798848485415,3.02785021050754,0.36497735907583,1.56449532329816,0.643240938192885,0,2.3218396401599,2.88751792667834,0,0.337169380156203,0.482022059766964,0.55146986366197,0,0.71181185733329,0.539325232640658,0.784885860501384,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0,0.857839051492628,0.329250856225877,1.1240175325762,0.502644862058154,1.48141512253647,0.651616610620649,1.03993478527958,0,0.811512834825538,0.70445216541493,0.577465791044295,0,0.380508304469197,0,0,0,0.702012795417713,0.743155811443641,0,0,0.850650583454319,5.0152772713595,2.61570544662566,0,24.1404986569012,2.81754988842323,1.65862492432618,2.30591925467138,2.27236380167484,1.77794104018073,0.381988425558278,0,0,3.39330725920968,1.20137223137567,4.85904935471983,0.224262168690721,0.43596006883328,0.51336800074665,2.84397774667111,0,0,5.58470044828228,1.04007436911366,0.257207374262142,1.41849132023278,0.266422179016099,3.0025378668211,2.71310802695722,0.823240336780769,0.977208552881205,1.77695974371273,2.37585561880029,6.93310567237048,3.48613383440118,4.29883862082845,1.2162378064119,0,0,1.4377491329495,1.14861935834114,0,2.02693829334611,1.84928690295345,0.537182889719687,0,2.75843064282698,0.431255149719035,2.82354679815446,0,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,3.31267027641678,1.00034104211935,1.62759014219841,1.24782516918484,1.42743191037729,0.946214490203608,1.7571212248907,1.20378439891088,0,1.03473071292505,0.664225598535437,0.368738337083406,0.521301686808497,0.195801157462741,0,1.03384013061444,0.647142602455851,0.640365346820666,0,0,0.30239029332968,2.48107807818777,2.91577749247319,1.40330047216537,3.45975702990393,3.58195074346692,1.76939313257968,1.48418066444991,0.154209693802656,1.06537035187876,0.492762936082855,0.519254429183621,0.232420756919918,0,0.200506470303285,0.736647911487171,2.75554675595056,1.27463817604702,1.18011973463482,0,0.462092022626489,0,0,0.527758144464379,0,0.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| ||
|short_description=p5@SPG20 | |short_description=p5@SPG20 | ||
}} | }} |
Latest revision as of 05:45, 17 September 2015
Short description: | p5@SPG20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SPG20_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 47bp_to_ENST00000476377_5end |
EntrezGene: | SPG20 |
HGNC: | 18514 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.90e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.90e-21 | 42 |
myeloid lineage restricted progenitor cell | 1.22e-19 | 66 |
granulocyte monocyte progenitor cell | 7.05e-18 | 67 |
myeloid leukocyte | 1.90e-17 | 72 |
defensive cell | 3.49e-17 | 48 |
phagocyte | 3.49e-17 | 48 |
monopoietic cell | 3.59e-16 | 59 |
monocyte | 3.59e-16 | 59 |
monoblast | 3.59e-16 | 59 |
promonocyte | 3.59e-16 | 59 |
myeloid cell | 4.03e-16 | 108 |
common myeloid progenitor | 4.03e-16 | 108 |
macrophage dendritic cell progenitor | 4.80e-16 | 61 |
stem cell | 1.33e-11 | 441 |
multi fate stem cell | 6.77e-10 | 427 |
connective tissue cell | 1.15e-09 | 361 |
somatic stem cell | 1.20e-09 | 433 |
mesenchymal cell | 6.19e-09 | 354 |
motile cell | 3.75e-08 | 386 |
mesothelial cell | 6.18e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.41e-18 | 76 |
skeletal element | 3.68e-17 | 90 |
bone element | 6.64e-17 | 82 |
skeletal system | 4.06e-15 | 100 |
immune system | 1.08e-11 | 93 |
musculoskeletal system | 2.68e-11 | 167 |
hematopoietic system | 4.89e-10 | 98 |
blood island | 4.89e-10 | 98 |
mesoderm | 6.04e-10 | 315 |
mesoderm-derived structure | 6.04e-10 | 315 |
presumptive mesoderm | 6.04e-10 | 315 |
connective tissue | 1.53e-09 | 371 |
hemolymphoid system | 6.54e-08 | 108 |