FFCP PHASE1:Hg19::chr13:36920450..36920574,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:36920450..36920574,-
|short_description=p1@SPG20
|description=CAGE_peak_1_at_SPG20_5end
|association_with_transcript=-30bp_to_ENST00000438666,ENST00000495...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23111 | |EntrezGene=23111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18514 | |HGNC=18514 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N0X7 | |UniProt=Q8N0X7 | ||
|association_with_transcript=-30bp_to_ENST00000438666,ENST00000495510_5end | |||
|cluster_id=chr13:36920450..36920574,- | |||
|description=CAGE_peak_1_at_SPG20_5end | |||
|id=chr13:36920450..36920574,- | |||
|ontology_enrichment_celltype=CL:0000766!3.57e-19!76;CL:0000839!4.14e-19!70;CL:0002057!2.48e-17!42;CL:0000557!3.27e-17!71;CL:0002194!1.29e-16!63;CL:0000576!1.29e-16!63;CL:0000040!1.29e-16!63;CL:0000559!1.29e-16!63;CL:0002009!2.24e-15!65;CL:0000860!1.43e-14!45;CL:0000763!5.12e-12!112;CL:0000049!5.12e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.08e-17;33!CL:0002057;1.08e-17;33!CL:0000473;2.57e-15;39!CL:0000234;2.57e-15;39!CL:0000576;4.39e-12;48!CL:0000766;5.68e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,2.18e-21,66;CL:0000766,2.56e-21,72;CL:0000557,2.71e-19,67;CL:0002194,7.77e-19,59;CL:0000576,7.77e-19,59;CL:0000040,7.77e-19,59;CL:0000559,7.77e-19,59;CL:0000473,4.01e-18,48;CL:0000234,4.01e-18,48;CL:0002009,2.03e-17,61;CL:0000860,2.47e-17,42;CL:0002057,2.47e-17,42;CL:0000763,3.53e-13,108;CL:0000049,3.53e-13,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.51e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.53e-28!115;UBERON:0002371!3.93e-15!80;UBERON:0004765!1.48e-14!101;UBERON:0001434!1.48e-14!101;UBERON:0001474!2.07e-14!86;UBERON:0001049!5.44e-14!57;UBERON:0005068!5.44e-14!57;UBERON:0006241!5.44e-14!57;UBERON:0007135!5.44e-14!57;UBERON:0002616!4.73e-13!59;UBERON:0002204!1.39e-12!167;UBERON:0003080!4.54e-11!42;UBERON:0000955!4.88e-11!69;UBERON:0006238!4.88e-11!69;UBERON:0002780!1.55e-10!41;UBERON:0001890!1.55e-10!41;UBERON:0006240!1.55e-10!41;UBERON:0002390!4.70e-10!102;UBERON:0003061!4.70e-10!102;UBERON:0001017!2.75e-09!82;UBERON:0002193!3.56e-09!112;UBERON:0005743!5.58e-09!86;UBERON:0003075!8.03e-09!86;UBERON:0007284!8.03e-09!86;UBERON:0000073!9.38e-09!94;UBERON:0001016!9.38e-09!94;UBERON:0002346!9.80e-09!90;UBERON:0002020!5.13e-08!34;UBERON:0003528!5.13e-08!34;UBERON:0000062!6.88e-08!511;UBERON:0001893!1.49e-07!34;UBERON:0002791!2.33e-07!33;UBERON:0001869!5.94e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.86e-08;114!UBERON:0002780;8.56e-08;41!UBERON:0001890;8.56e-08;41!UBERON:0000073;1.74e-07;53!UBERON:0002616;1.74e-07;53!UBERON:0003528;8.76e-07;34!UBERON:0002020;8.76e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.76e-28,114;UBERON:0002371,7.39e-17,76;UBERON:0001434,4.90e-16,100;UBERON:0001474,5.46e-16,82;UBERON:0004765,2.76e-15,90;UBERON:0002204,5.91e-14,167;UBERON:0001049,1.86e-13,56;UBERON:0005068,1.86e-13,56;UBERON:0006241,1.86e-13,56;UBERON:0007135,1.86e-13,56;UBERON:0002405,9.11e-13,93;UBERON:0000073,3.10e-12,53;UBERON:0002616,3.10e-12,53;UBERON:0002390,4.69e-11,98;UBERON:0003061,4.69e-11,98;UBERON:0000955,1.41e-10,68;UBERON:0006238,1.41e-10,68;UBERON:0002780,1.55e-10,41;UBERON:0001890,1.55e-10,41;UBERON:0003080,1.55e-10,41;UBERON:0006240,1.55e-10,41;UBERON:0002193,4.72e-10,108;UBERON:0003075,3.44e-09,82;UBERON:0007284,3.44e-09,82;UBERON:0002346,4.40e-09,86;UBERON:0000926,6.58e-09,315;UBERON:0004120,6.58e-09,315;UBERON:0006603,6.58e-09,315;UBERON:0001017,7.02e-09,81;UBERON:0001016,1.25e-08,89;UBERON:0003528,5.12e-08,34;UBERON:0002020,5.12e-08,34;UBERON:0010314,5.79e-08,132;UBERON:0003081,7.69e-08,203;UBERON:0001893,1.49e-07,34;UBERON:0002791,3.69e-07,32;UBERON:0001869,5.93e-07,32 | |||
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| ||
|short_description=p1@SPG20 | |||
}} | }} |
Latest revision as of 05:47, 17 September 2015
Short description: | p1@SPG20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPG20_5end |
Coexpression cluster: | NA |
Association with transcript: | -30bp_to_ENST00000438666, ENST00000495510_5end |
EntrezGene: | SPG20 |
HGNC: | 18514 |
UniProt: | Q8N0X7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 2.18e-21 | 66 |
myeloid leukocyte | 2.56e-21 | 72 |
granulocyte monocyte progenitor cell | 2.71e-19 | 67 |
monopoietic cell | 7.77e-19 | 59 |
monocyte | 7.77e-19 | 59 |
monoblast | 7.77e-19 | 59 |
promonocyte | 7.77e-19 | 59 |
defensive cell | 4.01e-18 | 48 |
phagocyte | 4.01e-18 | 48 |
macrophage dendritic cell progenitor | 2.03e-17 | 61 |
classical monocyte | 2.47e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.47e-17 | 42 |
myeloid cell | 3.53e-13 | 108 |
common myeloid progenitor | 3.53e-13 | 108 |