FFCP PHASE1:Hg19::chr5:179251036..179251061,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8878 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=178bp_to_ENST00000466342_5end | |||
|cluster_id=chr5:179251036..179251061,+ | |||
|description=CAGE_peak_8_at_SQSTM1_5end | |||
|id=chr5:179251036..179251061,+ | |||
|ontology_enrichment_celltype=CL:0000557!2.44e-10!71;CL:0002194!2.90e-10!63;CL:0000576!2.90e-10!63;CL:0000040!2.90e-10!63;CL:0000559!2.90e-10!63;CL:0000839!3.56e-10!70;CL:0002009!6.56e-10!65;CL:0002057!2.54e-09!42;CL:0000548!2.84e-09!679;CL:0000004!2.84e-09!679;CL:0000255!2.84e-09!679;CL:0000012!2.87e-09!682;CL:0000860!5.29e-09!45;CL:0000766!1.63e-08!76;CL:0000144!2.57e-08!625;CL:0000063!8.11e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.08e-16;33!CL:0002057;2.08e-16;33!CL:0000473;2.22e-13;39!CL:0000234;2.22e-13;39!CL:0000576;1.90e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.11e-13,48;CL:0000234,1.11e-13,48;CL:0000860,1.45e-12,42;CL:0002057,1.45e-12,42;CL:0000839,2.67e-12,66;CL:0000557,5.56e-12,67;CL:0000766,2.26e-11,72;CL:0002194,2.71e-11,59;CL:0000576,2.71e-11,59;CL:0000040,2.71e-11,59;CL:0000559,2.71e-11,59;CL:0002009,1.16e-10,61;CL:0002320,5.93e-08,361;CL:0000048,1.53e-07,427;CL:0000134,2.09e-07,354;CL:0000723,4.08e-07,433;CL:0000763,4.49e-07,108;CL:0000049,4.49e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.35e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.61e-12!448;UBERON:0004120!1.61e-12!448;UBERON:0006603!1.61e-12!448;UBERON:0002371!1.24e-08!80;UBERON:0002204!3.16e-07!167;UBERON:0001474!3.59e-07!86;UBERON:0003081!5.87e-07!216;UBERON:0002405!5.89e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.25e-10,76;UBERON:0001474,7.89e-09,82;UBERON:0002405,7.97e-09,93;UBERON:0000926,8.20e-09,315;UBERON:0004120,8.20e-09,315;UBERON:0006603,8.20e-09,315;UBERON:0004765,7.12e-08,90;UBERON:0001434,1.76e-07,100;UBERON:0002384,3.52e-07,371;UBERON:0003081,4.70e-07,203;UBERON:0002193,7.22e-07,108 | |||
|phase1_expression=0.908391896352783,0.856402095563933,0.140954404095971,1.0007329835313,2.68176656656373,1.74467704820074,0,2.52687949370732,1.56711376919903,0.245733936501509,0,0.218441372130172,0,0.618831764800233,0.662794751455832,0,2.41077811209591,1.46062018077475,0.975865597581014,0,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0.152826811495903,0.0821005894499457,0,0,0,0.154816123316076,0,0,1.84877005083394,0,0,0,0,0,0,2.01523926815932,0.647787332037959,1.28787783817093,2.32637182047304,3.02300754951048,1.4555043671269,2.32429036905685,3.70051099219643,2.47765096716083,0.575384784644301,0.768482119587302,0.47296445977717,3.44745680736619,1.93645405075148,2.70852973188684,3.20011977222428,3.547779950752,4.04502272001152,2.44867113896722,1.92557416245656,1.91801137739712,0.329851300186716,1.59570926097305,0.852449501065388,0.870627715885752,2.8369261234557,1.86846674698672,0.502497330513487,1.5644487552606,1.3031330682307,1.21079900526674,2.20966581592539,1.26584954976354,0.633765858935825,0.425208599930087,0,0.112328631146495,0.300353785683013,0.16072558669708,0.285012743741249,0,0.730656615058536,0,0,0,0,0.400395987036012,1.14950487990897,0,0,0,0.587237189370939,0,0,0.560508562981536,0.263384084775077,0,0.786021525498329,0.411202997999018,0,0,0,0,0.668462741311041,0,0.221533894583621,0,0.128091319725675,0.390178042679635,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0.150575119077773,0.511946444617674,0,0,0,0,0,0.289648807765598,0,0,0,0,1.50401373190767,0.579386075843295,0.795285947051099,0.973269740605272,0.0945348171640679,0.665188192387692,0.175669571386252,0.196468613246569,0,0,0.97364218096405,0.522389211897802,0.398873881556595,0,0,0,0.39752481473341,0,0.347140501607594,1.13061588384802,0.419499436209906,0.825354125820202,0.835979866147242,0.516833518338658,0.35576626268671,0,2.01414658554573,0,0.732186172644509,0,0.81014194788176,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,1.31780417436063,0,0.436094052142534,0.496971951695318,0.25326102332916,1.98613771219828,1.43418310374407,2.12801029319014,1.12135520028461,0,1.2333377420858,0.311211035399766,0.404132016209064,0.163461903113459,0.151357427644931,0.576175924479999,0,0.624320153660641,1.71141546463335,0.747243402759005,0.117434498643765,0.323745888736263,0,0,0.245668634623536,0.929932030581889,3.56400857184616,5.68713937340681,0,0,0,0,0,0,1.5324389789951,1.95309476578576,0.226864366320042,0.179389635688862,0.427114777637135,0,0,0.103052529238439,0.257640540045629,0.37223371266318,0,0.194874010322397,0.252433774244115,0.0920498986422993,0.646584227275248,0,0,0.169560592310488,1.73934767846967,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0.518305275076852,0,0.72995471815166,3.12899064659632,0,0,0.928735856063958,1.44375896333917,1.0647612003586,1.01150814046861,0.482022059766964,0.772057809126758,1.74303555273925,0.474541238222193,0.404493924480493,0.196221465125346,0,0,0,0.4115740113314,1.47008711385542,1.26755034821831,1.96565443335525,0.590789906681404,0,0.122988438543114,0.171567810298526,0.329250856225877,0,0,0.0925884451585296,1.62904152655162,1.03993478527958,0,0.115930404975077,0.117408694235822,1.58803092537181,1.38895653772983,2.28304982681518,0,0,0.738651018262192,0.702012795417713,0.594524649154913,0,0.503946384596579,0.567100388969546,0.179117045405697,0,0,0,1.58487181223807,2.69526550203004,0.576479813667846,3.53478813593864,0,0,1.17217447210047,0,0.514137463516618,0.300343057843917,0.285826432630578,0.112131084345361,0.43596006883328,0,0.258543431515556,0,0,0.531876233169741,3.12022310734098,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0,1.80863626235752,0.871533458600294,0.99972991182057,1.2162378064119,2.51128545716063,2.10833939483032,1.19812427745791,1.14861935834114,0,0.723906533337896,2.05476322550383,0,0.112085143993527,0.197030760201927,0.215627574859517,0,0,0,0.773288812777695,0,0,0,0,0,0.49076596687656,0.500170521059677,1.08506009479894,1.24782516918484,1.96271887676878,0.473107245101804,0.35142424497814,1.20378439891088,9.09630016223939,1.03473071292505,0,0,0.868836144680828,1.17480694477644,1.37257369524342,0,0.215714200818617,0.106727557803444,1.21251028578504,1.66435439510497,0,0.496215615637554,0.153461973288062,0.841980283299221,0.640695746278505,1.53512174720011,0.804269605718038,2.96836132889982,0.308419387605311,0.532685175939381,0.164254312027618,2.07701771673448,0.464841513839837,0.241718899183244,1.40354529212299,0.644566922551274,1.03333003348146,2.00300284807389,4.85160335349869,0.902399225814824,0.385076685522074,0.784349769176855,0,0.105551628892876,0,1.02056223165909,0.215915916102139,0,0,2.00675909541941,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0.328014645699706,0,0.824328093181778,0.183138929636687,0.247528499761764,0,2.60024098414608,0,0.290012154876366,0.154048617114644,0.460511024178389,0.137836572484531,0.214840489736547,0.290033387828457,0.255679882248303,0.0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| |||
|short_description=p8@SQSTM1 | |||
}} |
Latest revision as of 09:53, 17 September 2015
Short description: | p8@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SQSTM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 178bp_to_ENST00000466342_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.11e-13 | 48 |
phagocyte | 1.11e-13 | 48 |
classical monocyte | 1.45e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.45e-12 | 42 |
myeloid lineage restricted progenitor cell | 2.67e-12 | 66 |
granulocyte monocyte progenitor cell | 5.56e-12 | 67 |
myeloid leukocyte | 2.26e-11 | 72 |
monopoietic cell | 2.71e-11 | 59 |
monocyte | 2.71e-11 | 59 |
monoblast | 2.71e-11 | 59 |
promonocyte | 2.71e-11 | 59 |
macrophage dendritic cell progenitor | 1.16e-10 | 61 |
connective tissue cell | 5.93e-08 | 361 |
multi fate stem cell | 1.53e-07 | 427 |
mesenchymal cell | 2.09e-07 | 354 |
somatic stem cell | 4.08e-07 | 433 |
myeloid cell | 4.49e-07 | 108 |
common myeloid progenitor | 4.49e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.25e-10 | 76 |
bone element | 7.89e-09 | 82 |
immune system | 7.97e-09 | 93 |
mesoderm | 8.20e-09 | 315 |
mesoderm-derived structure | 8.20e-09 | 315 |
presumptive mesoderm | 8.20e-09 | 315 |
skeletal element | 7.12e-08 | 90 |
skeletal system | 1.76e-07 | 100 |
connective tissue | 3.52e-07 | 371 |
lateral plate mesoderm | 4.70e-07 | 203 |
hemolymphoid system | 7.22e-07 | 108 |