FFCP PHASE1:Hg19::chr10:17270651..17270667,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |EntrezGene=7431 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |HGNC=12692 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=137bp_to_ENST00000478746_5end | |association_with_transcript=137bp_to_ENST00000478746_5end | ||
|cluster_id=chr10:17270651..17270667,+ | |||
|coexpression_cluster_id=C6 | |coexpression_cluster_id=C6 | ||
|description=CAGE_peak_8_at_VIM_5end | |description=CAGE_peak_8_at_VIM_5end | ||
|id=chr10:17270651..17270667,+ | |id=chr10:17270651..17270667,+ | ||
|ontology_enrichment_celltype=CL:0002057!5.98e-32!42;CL:0000860!2.76e-31!45;CL:0000766!2.41e-28!76;CL:0000557!8.68e-25!71;CL:0002009!9.78e-22!65;CL:0000839!1.73e-21!70;CL:0002194!1.75e-20!63;CL:0000576!1.75e-20!63;CL:0000040!1.75e-20!63;CL:0000559!1.75e-20!63;CL:0000738!1.80e-18!140;CL:0000763!1.07e-17!112;CL:0000049!1.07e-17!112;CL:0000134!1.77e-14!358;CL:0002320!9.86e-14!365;CL:0000219!3.56e-13!390;CL:0000037!8.70e-13!172;CL:0000566!8.70e-13!172;CL:0000048!1.60e-12!430;CL:0000988!1.89e-12!182;CL:0002031!3.78e-12!124;CL:0000144!6.18e-12!625;CL:0002371!1.10e-11!591;CL:0000034!1.43e-11!444;CL:0000723!1.72e-11!436;CL:0002087!3.44e-11!119;CL:0002032!6.65e-11!165;CL:0000837!6.65e-11!165;CL:0000012!1.13e-10!682;CL:0000063!3.05e-10!578;CL:0000548!1.39e-09!679;CL:0000004!1.39e-09!679;CL:0000255!1.39e-09!679;CL:0000003!1.87e-07!722;CL:0002393!2.35e-07!9;CL:0002397!2.35e-07!9;CL:0000094!3.17e-07!8;CL:0000081!6.91e-07!11 | |ontology_enrichment_celltype=CL:0002057!5.98e-32!42;CL:0000860!2.76e-31!45;CL:0000766!2.41e-28!76;CL:0000557!8.68e-25!71;CL:0002009!9.78e-22!65;CL:0000839!1.73e-21!70;CL:0002194!1.75e-20!63;CL:0000576!1.75e-20!63;CL:0000040!1.75e-20!63;CL:0000559!1.75e-20!63;CL:0000738!1.80e-18!140;CL:0000763!1.07e-17!112;CL:0000049!1.07e-17!112;CL:0000134!1.77e-14!358;CL:0002320!9.86e-14!365;CL:0000219!3.56e-13!390;CL:0000037!8.70e-13!172;CL:0000566!8.70e-13!172;CL:0000048!1.60e-12!430;CL:0000988!1.89e-12!182;CL:0002031!3.78e-12!124;CL:0000144!6.18e-12!625;CL:0002371!1.10e-11!591;CL:0000034!1.43e-11!444;CL:0000723!1.72e-11!436;CL:0002087!3.44e-11!119;CL:0002032!6.65e-11!165;CL:0000837!6.65e-11!165;CL:0000012!1.13e-10!682;CL:0000063!3.05e-10!578;CL:0000548!1.39e-09!679;CL:0000004!1.39e-09!679;CL:0000255!1.39e-09!679;CL:0000003!1.87e-07!722;CL:0002393!2.35e-07!9;CL:0002397!2.35e-07!9;CL:0000094!3.17e-07!8;CL:0000081!6.91e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.41e-64;33!CL:0002057;2.41e-64;33!CL:0000473;4.46e-44;39!CL:0000234;4.46e-44;39!CL:0000576;9.43e-44;48!CL:0000766;2.71e-35;69!CL:0000094;1.83e-17;8!CL:0000763;4.88e-16;100!CL:0000081;3.52e-15;11!CL:0002087;6.54e-14;104!CL:0000738;5.11e-12;136!CL:0002393;5.24e-10;6!CL:0002397;5.24e-10;6!CL:0000767;3.80e-08;3!CL:0000988;1.01e-07;177!CL:0000226;1.74e-07;3!CL:0000842;1.74e-07;3!CL:0000623;2.77e-07;3!CL:0000775;5.75e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.00e-84,42;CL:0002057,3.00e-84,42;CL:0000766,2.50e-77,72;CL:0000473,4.37e-72,48;CL:0000234,4.37e-72,48;CL:0000557,4.54e-67,67;CL:0002009,1.41e-61,61;CL:0000839,2.18e-59,66;CL:0002194,6.54e-58,59;CL:0000576,6.54e-58,59;CL:0000040,6.54e-58,59;CL:0000559,6.54e-58,59;CL:0000738,2.57e-55,136;CL:0000763,7.41e-53,108;CL:0000049,7.41e-53,108;CL:0000037,1.54e-44,168;CL:0000988,7.21e-43,177;CL:0002031,8.65e-40,120;CL:0002032,4.23e-39,161;CL:0000837,4.23e-39,161;CL:0002087,3.56e-38,115;CL:0000134,1.10e-21,354;CL:0002320,7.03e-21,361;CL:0000219,7.87e-19,386;CL:0000094,1.47e-17,8;CL:0000034,2.30e-16,441;CL:0000048,5.55e-16,427;CL:0000723,1.75e-15,433;CL:0000081,2.53e-15,11;CL:0002393,1.39e-14,9;CL:0002397,1.39e-14,9;CL:0000767,3.85e-08,3;CL:0000226,1.93e-07,3;CL:0000842,1.93e-07,3;CL:0000623,2.74e-07,3;CL:0000825,2.74e-07,3;CL:0000775,4.70e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-60;42!CL:0000049;8.54e-15;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.14e-21!80;UBERON:0001474!6.13e-21!86;UBERON:0004765!1.66e-18!101;UBERON:0001434!1.66e-18!101;UBERON:0002390!1.74e-18!102;UBERON:0003061!1.74e-18!102;UBERON:0002193!1.66e-16!112;UBERON:0002384!9.57e-15!375;UBERON:0003081!1.62e-11!216;UBERON:0002405!3.24e-11!115;UBERON:0002204!3.96e-10!167 | |ontology_enrichment_uberon=UBERON:0002371!1.14e-21!80;UBERON:0001474!6.13e-21!86;UBERON:0004765!1.66e-18!101;UBERON:0001434!1.66e-18!101;UBERON:0002390!1.74e-18!102;UBERON:0003061!1.74e-18!102;UBERON:0002193!1.66e-16!112;UBERON:0002384!9.57e-15!375;UBERON:0003081!1.62e-11!216;UBERON:0002405!3.24e-11!115;UBERON:0002204!3.96e-10!167 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.27e-60,76;UBERON:0001474,1.36e-54,82;UBERON:0002390,5.00e-52,98;UBERON:0003061,5.00e-52,98;UBERON:0004765,1.71e-48,90;UBERON:0002405,1.78e-46,93;UBERON:0002193,8.06e-46,108;UBERON:0001434,3.07e-42,100;UBERON:0003081,3.46e-22,203;UBERON:0002204,8.15e-22,167;UBERON:0002384,8.76e-20,371;UBERON:0000926,8.98e-11,315;UBERON:0004120,8.98e-11,315;UBERON:0006603,8.98e-11,315 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0.436882744260345,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0.408001382488506,0,0,0.684372125364421,0.502170558379211,0,0,0,22.8151280572364,13.0501995353052,21.3646250176185,0.919421224478927,0,0,0,0,1.46800219667424,55.9535362617196,51.1388341048861,45.5722828503289,0,0,0,7.56070841653736,9.82477453590904,9.21819432513701,13.9457422143411,12.3350366406548,13.0076675775944,16.3984663623626,16.3942852178624,10.4052181150977,34.1298223929252,15.4916324060118,12.1883837934908,9.97684399575805,9.27880910196676,5.8428105955722,29.6901375599776,21.8231738411744,26.2128221577607,6.59702600373432,9.17532825059507,8.52449501065388,29.8915515787442,33.4757282567772,28.0270012048009,16.5824119069451,11.4726242052444,14.5516525952428,25.4267791106015,27.2525450630798,24.3676038329481,0.845021145247767,3.61427309940574,2.30624510059213,1.57260083605093,4.05477610672067,2.57160938715328,1.14005097496499,1.39241674039363,1.64397738388171,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,5.28685314316103,8.96813700770458,0.526768169550154,0,0.393010762749165,0.205601498999509,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0.14828656316206,0,0,0.226618685395132,0.383220493601921,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,3.62892137804518,2.94184215361858,1.73789284659359,0,0,0,0.361439152384566,0,0,0,0,0,0.221729397462564,0.43917392846563,0.130979075497713,0,0,0,0.174129737299267,0.26591592103773,2.14641561874808,0.571994910780128,1.11437250398869,0.198762407366705,0.860234595106124,0.347140501607594,0,0.419499436209906,0.825354125820202,0.626984899610432,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0.760272105718513,0.732186172644509,0.367663080345869,0.81014194788176,0.17859945656816,0.22452937262617,0.225222960966644,0,0.949265659568129,0.366403487860815,7.9068250461638,15.511210565933,0,0.993943903390637,0,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0.74000264525148,0,0.269421344139376,0,0.151357427644931,0.576175924479999,0.468642863667593,0,1.71141546463335,0.149448680551801,0.587172493218824,0.161872944368132,0.561803226808994,0.61246251376468,0.245668634623536,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0.500474079487857,0.277064115484183,0.438977620880838,0.612975591598039,0.600952235626387,0.226864366320042,0.89694817844431,0,0.211931901159562,1.50045548042201,0.103052529238439,0.772921620136887,0.37223371266318,2.19409231913646,0.194874010322397,0.252433774244115,0,0,3.90510551768276,0.503760491138201,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0.651616610620649,1.03993478527958,0,0.231860809950154,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0.871901815541886,0.383382679165211,0.492663237895943,0.176096868026452,22.8060927094849,13.1149157609435,18.4313952802515,0.126995788584338,0,0,1.71072446022705,0.411309970813294,0,0,0,0,0.51336800074665,0.387815147273333,0,2.535908257668,0,2.08014873822732,0,0,0,0,0,0,0.325736184293735,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0.479249710983165,0,1.42636905040718,0.289562613335158,0,0.179060963239896,0,6.10795356625974,4.9594342217689,5.77543663258868,0.76228387266739,0,0,0.167516265334349,0,2.99602809578873,2.99161459204025,5.38740167466846,0,0,0,0.207970861530807,0.356857977594324,0,0.234282829985426,0,0,0,0,0,0.173767228936166,0,0,3.10152039184331,11.6485668442053,9.07184241329277,0,0,0.604780586659361,0,0.460385919864187,0,0.128139149255701,0.511707249066704,0.804269605718038,0,0.771048469013278,0.532685175939381,0.410635780069046,0,0.581051892299796,0,0.200506470303285,0.0920809889358963,0.229628896329213,0.546273504020151,0,0,0.0770153371044148,0,0,0,1.13733384070897,0.340187410553031,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.206082023295445,0.183138929636687,0.082509499920588,0.574265537996172,0,1.6068392984416,0.386682873168488,0.308097234229289,0.307007349452259,0.689182862422653,0.322260734604821,0.290033387828457,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0.4046311234222,0.464845549297286,0,0,0.616067160352178,0,0,0.55597265731176,0.143124886741991,0.372158369359667,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0.421258456238981,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0.438450885253763,0,0,0.405820753925408,0.92947049429925,1.40847801266121,0.143411352204052,0,0.35667105148125,0,0,0,0,0.699869440489966,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0.166849141711909,0,0.278406173895242,0,0,0,0,0,0.293016358543788,0,0.222886768554957,1.98895302764489,0,0.593929361665277,0,0,0,0,0,0,0.398495976502139,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| ||
|short_description=p8@VIM | |short_description=p8@VIM | ||
}} | }} |
Latest revision as of 10:22, 17 September 2015
Short description: | p8@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_VIM_5end |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | 137bp_to_ENST00000478746_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.27e-60 | 76 |
bone element | 1.36e-54 | 82 |
hematopoietic system | 5.00e-52 | 98 |
blood island | 5.00e-52 | 98 |
skeletal element | 1.71e-48 | 90 |
immune system | 1.78e-46 | 93 |
hemolymphoid system | 8.06e-46 | 108 |
skeletal system | 3.07e-42 | 100 |
lateral plate mesoderm | 3.46e-22 | 203 |
musculoskeletal system | 8.15e-22 | 167 |
connective tissue | 8.76e-20 | 371 |
mesoderm | 8.98e-11 | 315 |
mesoderm-derived structure | 8.98e-11 | 315 |
presumptive mesoderm | 8.98e-11 | 315 |