FFCP PHASE1:Hg19::chr3:2140400..2140411,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:2140400..2140411,+
|short_description=p14@CNTN4
|description=CAGE_peak_14_at_CNTN4_5end
|association_with_transcript=-85bp_to_ENST00000422330_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152330 | |EntrezGene=152330 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2174 | |HGNC=2174 | ||
|TSSclassifier=strong | |||
|UniProt=C9JMQ2 | |UniProt=C9JMQ2 | ||
|association_with_transcript=-85bp_to_ENST00000422330_5end | |||
|cluster_id=chr3:2140400..2140411,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_14_at_CNTN4_5end | |||
|id=chr3:2140400..2140411,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;2.19e-12;6!CL:0000153;1.04e-08;9!CL:0000447;1.04e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.34e-66;1!UBERON:0006215;3.66e-23;3!UBERON:0003056;3.66e-23;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.37e-25!115;UBERON:0002346!1.29e-12!90;UBERON:0001049!4.44e-11!57;UBERON:0005068!4.44e-11!57;UBERON:0006241!4.44e-11!57;UBERON:0007135!4.44e-11!57;UBERON:0003075!5.56e-11!86;UBERON:0007284!5.56e-11!86;UBERON:0002616!2.72e-09!59;UBERON:0000200!6.73e-08!6;UBERON:0001869!7.57e-08!32;UBERON:0005743!1.01e-07!86;UBERON:0000073!1.59e-07!94;UBERON:0001016!1.59e-07!94;UBERON:0004732!1.65e-07!13;UBERON:0001017!2.58e-07!82;UBERON:0001893!2.84e-07!34;UBERON:0002020!2.91e-07!34;UBERON:0003528!2.91e-07!34;UBERON:0000955!2.99e-07!69;UBERON:0006238!2.99e-07!69;UBERON:0001950!3.79e-07!20;UBERON:0002780!5.75e-07!41;UBERON:0001890!5.75e-07!41;UBERON:0006240!5.75e-07!41;UBERON:0000153!7.91e-07!129;UBERON:0007811!7.91e-07!129;UBERON:0003080!9.52e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.34e-66;1!UBERON:0001785;3.34e-66;1!UBERON:0002464;3.34e-66;1!UBERON:0004904;3.34e-66;1!UBERON:0001021;3.34e-66;1!UBERON:0003714;5.96e-34;2!UBERON:0005162;5.96e-34;2!UBERON:0000122;5.96e-34;2!UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0004732;2.66e-21;13!UBERON:0002037;2.59e-12;6!UBERON:0002680;1.16e-08;9!UBERON:0000010;1.16e-08;8!UBERON:0001895;1.16e-08;9!UBERON:0004733;8.14e-07;12!UBERON:0002028;8.14e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.39e-66,1;UBERON:0001785,2.39e-66,1;UBERON:0002464,2.39e-66,1;UBERON:0004904,2.39e-66,1;UBERON:0001021,2.39e-66,1;UBERON:0003902,2.39e-66,1;UBERON:0005425,2.39e-66,1;UBERON:0003714,5.04e-34,2;UBERON:0005162,5.04e-34,2;UBERON:0000122,5.04e-34,2;UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0004732,2.66e-21,13;UBERON:0001781,8.69e-18,4;UBERON:0000966,2.45e-12,6;UBERON:0005388,2.45e-12,6;UBERON:0001802,2.45e-12,6;UBERON:0002037,2.74e-12,6;UBERON:0006215,2.74e-12,6;UBERON:0000010,1.12e-08,8;UBERON:0002680,1.21e-08,9;UBERON:0001895,1.21e-08,9;UBERON:0010092,1.21e-08,9;UBERON:0004733,8.38e-07,12;UBERON:0002028,8.38e-07,12;UBERON:0007277,8.38e-07,12 | |||
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| ||
|short_description=p14@CNTN4 | |||
}} | }} |
Latest revision as of 18:35, 17 September 2015
Short description: | p14@CNTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_CNTN4_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -85bp_to_ENST00000422330_5end |
EntrezGene: | CNTN4 |
HGNC: | 2174 |
UniProt: | C9JMQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.39e-66 | 1 |
cranial nerve | 2.39e-66 | 1 |
nerve trunk | 2.39e-66 | 1 |
nerve connecting eye with brain | 2.39e-66 | 1 |
nerve | 2.39e-66 | 1 |
retinal neural layer | 2.39e-66 | 1 |
presumptive neural retina | 2.39e-66 | 1 |
neural tissue | 5.04e-34 | 2 |
multi cell component structure | 5.04e-34 | 2 |
neuron projection bundle | 5.04e-34 | 2 |
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
segmental subdivision of nervous system | 2.66e-21 | 13 |
layer of retina | 8.69e-18 | 4 |
retina | 2.45e-12 | 6 |
photoreceptor array | 2.45e-12 | 6 |
posterior segment of eyeball | 2.45e-12 | 6 |
cerebellum | 2.74e-12 | 6 |
rhombic lip | 2.74e-12 | 6 |
peripheral nervous system | 1.12e-08 | 8 |
regional part of metencephalon | 1.21e-08 | 9 |
metencephalon | 1.21e-08 | 9 |
future metencephalon | 1.21e-08 | 9 |
segmental subdivision of hindbrain | 8.38e-07 | 12 |
hindbrain | 8.38e-07 | 12 |
presumptive hindbrain | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |