FFCP PHASE1:Hg19::chr13:77526602..77526613,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=730249 | |EntrezGene=730249 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33904 | |HGNC=33904 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000449753_5end | |association_with_transcript=0bp_to_ENST00000449753_5end | ||
|cluster_id=chr13:77526602..77526613,+ | |||
|coexpression_cluster_id=C174 | |coexpression_cluster_id=C174 | ||
|description=CAGE_peak_2_at_IRG1_5end | |description=CAGE_peak_2_at_IRG1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!4.93e-60!42;CL:0000860!5.57e-56!45;CL:0002194!4.03e-39!63;CL:0000576!4.03e-39!63;CL:0000040!4.03e-39!63;CL:0000559!4.03e-39!63;CL:0002009!6.56e-38!65;CL:0000839!3.53e-35!70;CL:0000557!1.12e-34!71;CL:0000766!2.28e-32!76;CL:0000763!9.38e-22!112;CL:0000049!9.38e-22!112;CL:0002087!1.99e-20!119;CL:0002031!1.44e-19!124;CL:0000738!3.14e-17!140;CL:0002032!1.80e-14!165;CL:0000837!1.80e-14!165;CL:0000037!7.67e-14!172;CL:0000566!7.67e-14!172;CL:0000988!5.05e-13!182 | |ontology_enrichment_celltype=CL:0002057!4.93e-60!42;CL:0000860!5.57e-56!45;CL:0002194!4.03e-39!63;CL:0000576!4.03e-39!63;CL:0000040!4.03e-39!63;CL:0000559!4.03e-39!63;CL:0002009!6.56e-38!65;CL:0000839!3.53e-35!70;CL:0000557!1.12e-34!71;CL:0000766!2.28e-32!76;CL:0000763!9.38e-22!112;CL:0000049!9.38e-22!112;CL:0002087!1.99e-20!119;CL:0002031!1.44e-19!124;CL:0000738!3.14e-17!140;CL:0002032!1.80e-14!165;CL:0000837!1.80e-14!165;CL:0000037!7.67e-14!172;CL:0000566!7.67e-14!172;CL:0000988!5.05e-13!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.67e-63;33!CL:0002057;1.67e-63;33!CL:0000473;3.13e-40;39!CL:0000234;3.13e-40;39!CL:0000576;3.53e-32;48!CL:0000766;2.49e-14;69!CL:0002087;8.70e-11;104!CL:0000763;2.09e-10;100 | |ontology_enrichment_celltype_v019=CL:0000860;1.67e-63;33!CL:0002057;1.67e-63;33!CL:0000473;3.13e-40;39!CL:0000234;3.13e-40;39!CL:0000576;3.53e-32;48!CL:0000766;2.49e-14;69!CL:0002087;8.70e-11;104!CL:0000763;2.09e-10;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.62e-55,42;CL:0002057,1.62e-55,42;CL:0000473,1.66e-48,48;CL:0000234,1.66e-48,48;CL:0002194,1.10e-38,59;CL:0000576,1.10e-38,59;CL:0000040,1.10e-38,59;CL:0000559,1.10e-38,59;CL:0002009,2.04e-37,61;CL:0000839,1.41e-34,66;CL:0000557,4.65e-34,67;CL:0000766,1.11e-31,72;CL:0000763,5.64e-21,108;CL:0000049,5.64e-21,108;CL:0002087,1.16e-19,115;CL:0002031,8.13e-19,120;CL:0000738,1.60e-16,136;CL:0002032,7.73e-14,161;CL:0000837,7.73e-14,161;CL:0000037,3.15e-13,168;CL:0000988,1.64e-12,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-37;42 | |ontology_enrichment_development_v019=CL:0002057;1.68e-37;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.00e-30!80;UBERON:0001474!1.52e-28!86;UBERON:0004765!3.31e-24!101;UBERON:0001434!3.31e-24!101;UBERON:0002390!5.81e-24!102;UBERON:0003061!5.81e-24!102;UBERON:0002193!9.38e-22!112;UBERON:0002405!3.64e-21!115;UBERON:0002204!2.75e-14!167;UBERON:0003081!8.44e-11!216 | |ontology_enrichment_uberon=UBERON:0002371!1.00e-30!80;UBERON:0001474!1.52e-28!86;UBERON:0004765!3.31e-24!101;UBERON:0001434!3.31e-24!101;UBERON:0002390!5.81e-24!102;UBERON:0003061!5.81e-24!102;UBERON:0002193!9.38e-22!112;UBERON:0002405!3.64e-21!115;UBERON:0002204!2.75e-14!167;UBERON:0003081!8.44e-11!216 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.34e-30,76;UBERON:0001474,8.85e-28,82;UBERON:0004765,2.83e-25,90;UBERON:0002405,1.92e-24,93;UBERON:0002390,3.59e-23,98;UBERON:0003061,3.59e-23,98;UBERON:0001434,1.07e-22,100;UBERON:0002193,5.64e-21,108;UBERON:0002204,2.60e-13,167;UBERON:0003081,8.49e-11,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3015391385772,1.2808035326455,2.60130452877444,0,0,0,0,0,0,1.83650335422542,0.641858054152187,0,0,0,0,15.381089647315,2.26954089876456,3.73693349397345,1.00499466102697,1.5644487552606,0,9.08099253950053,1.84138817993782,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3015391385772,1.2808035326455,2.60130452877444,0,0,0,0,0,0,1.83650335422542,0.641858054152187,0,0,0,0,15.381089647315,2.26954089876456,3.73693349397345,1.00499466102697,1.5644487552606,0,9.08099253950053,1.84138817993782,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@IRG1 | |short_description=p2@IRG1 | ||
}} | }} |
Latest revision as of 01:03, 18 September 2015
Short description: | p2@IRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IRG1_5end |
Coexpression cluster: | C174_CD14_Neutrophils_Smooth_mesothelioma_embryonic_Monocytederived_Eosinophils |
Association with transcript: | 0bp_to_ENST00000449753_5end |
EntrezGene: | IRG1 |
HGNC: | 33904 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.62e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.62e-55 | 42 |
defensive cell | 1.66e-48 | 48 |
phagocyte | 1.66e-48 | 48 |
monopoietic cell | 1.10e-38 | 59 |
monocyte | 1.10e-38 | 59 |
monoblast | 1.10e-38 | 59 |
promonocyte | 1.10e-38 | 59 |
macrophage dendritic cell progenitor | 2.04e-37 | 61 |
myeloid lineage restricted progenitor cell | 1.41e-34 | 66 |
granulocyte monocyte progenitor cell | 4.65e-34 | 67 |
myeloid leukocyte | 1.11e-31 | 72 |
myeloid cell | 5.64e-21 | 108 |
common myeloid progenitor | 5.64e-21 | 108 |
nongranular leukocyte | 1.16e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 8.13e-19 | 120 |
leukocyte | 1.60e-16 | 136 |
hematopoietic oligopotent progenitor cell | 7.73e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.73e-14 | 161 |
hematopoietic stem cell | 3.15e-13 | 168 |
hematopoietic cell | 1.64e-12 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.34e-30 | 76 |
bone element | 8.85e-28 | 82 |
skeletal element | 2.83e-25 | 90 |
immune system | 1.92e-24 | 93 |
hematopoietic system | 3.59e-23 | 98 |
blood island | 3.59e-23 | 98 |
skeletal system | 1.07e-22 | 100 |
hemolymphoid system | 5.64e-21 | 108 |
musculoskeletal system | 2.60e-13 | 167 |
lateral plate mesoderm | 8.49e-11 | 203 |