FFCP PHASE1:Hg19::chr6:32411527..32411547,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3122 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4947 | |||
|TSSclassifier=strong | |||
|UniProt=Q29868 | |||
|association_with_transcript=-43bp_to_V00528_5end | |||
|cluster_id=chr6:32411527..32411547,+ | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_4_at_HLA-DRA_5end | |||
|id=chr6:32411527..32411547,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.39e-63!140;CL:0002087!2.01e-58!119;CL:0000037!1.01e-55!172;CL:0000566!1.01e-55!172;CL:0000988!2.36e-52!182;CL:0002031!2.89e-52!124;CL:0002032!1.87e-51!165;CL:0000837!1.87e-51!165;CL:0002009!4.94e-47!65;CL:0002194!9.51e-45!63;CL:0000576!9.51e-45!63;CL:0000040!9.51e-45!63;CL:0000559!9.51e-45!63;CL:0002057!6.09e-43!42;CL:0000557!4.45e-41!71;CL:0000766!7.41e-41!76;CL:0000860!7.66e-39!45;CL:0000839!5.00e-38!70;CL:0000763!3.97e-36!112;CL:0000049!3.97e-36!112;CL:0000945!6.76e-21!24;CL:0000826!6.76e-21!24;CL:0000236!1.11e-14!14;CL:0000542!3.42e-13!53;CL:0000051!3.42e-13!53;CL:0000451!1.08e-12!10;CL:0000838!1.24e-12!52;CL:0000134!1.25e-11!358;CL:0000990!4.67e-11!8;CL:0002320!8.88e-11!365;CL:0002393!2.00e-09!9;CL:0002397!2.00e-09!9;CL:0000219!1.60e-08!390;CL:0000840!8.61e-08!5;CL:0001029!8.61e-08!5;CL:0000453!4.08e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.10e-56;33!CL:0002057;5.10e-56;33!CL:0000473;1.14e-55;39!CL:0000234;1.14e-55;39!CL:0000576;9.14e-48;48!CL:0000766;8.00e-34;69!CL:0000738;4.54e-23;136!CL:0002087;2.32e-22;104!CL:0000945;2.77e-22;24!CL:0000451;1.68e-21;10!CL:0000236;5.38e-21;13!CL:0000990;1.25e-18;8!CL:0000763;5.99e-16;100!CL:0000840;9.00e-13;5!CL:0000988;1.54e-12;177!CL:0000235;2.48e-12;6!CL:0000453;1.39e-11;5!CL:0002393;2.21e-11;6!CL:0002397;2.21e-11;6!CL:0000219;4.53e-10;193!CL:0000542;4.58e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.47e-95,61;CL:0000738,2.37e-93,136;CL:0002194,1.08e-90,59;CL:0000576,1.08e-90,59;CL:0000040,1.08e-90,59;CL:0000559,1.08e-90,59;CL:0000473,5.14e-88,48;CL:0000234,5.14e-88,48;CL:0002087,6.68e-86,115;CL:0000557,4.94e-85,67;CL:0002031,3.10e-82,120;CL:0000766,9.34e-80,72;CL:0000839,2.08e-79,66;CL:0000037,5.02e-77,168;CL:0000860,1.08e-76,42;CL:0002057,1.08e-76,42;CL:0000988,5.91e-72,177;CL:0002032,2.91e-71,161;CL:0000837,2.91e-71,161;CL:0000763,4.40e-63,108;CL:0000049,4.40e-63,108;CL:0000134,2.80e-26,354;CL:0002320,2.54e-25,361;CL:0000236,1.59e-22,14;CL:0000945,3.00e-22,24;CL:0000826,3.00e-22,24;CL:0000219,5.95e-22,386;CL:0000451,1.12e-21,10;CL:0000990,1.03e-18,8;CL:0000034,6.09e-18,441;CL:0000048,7.61e-18,427;CL:0000723,2.80e-17,433;CL:0002393,9.12e-16,9;CL:0002397,9.12e-16,9;CL:0000840,8.07e-13,5;CL:0001029,8.07e-13,5;CL:0000235,3.22e-12,6;CL:0000453,1.32e-11,5;CL:0000838,1.14e-09,52;CL:0000542,2.16e-09,53;CL:0000051,2.16e-09,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.46e-54;42!CL:0000049;1.65e-18;108!CL:0000051;4.58e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.72e-45!102;UBERON:0003061!4.72e-45!102;UBERON:0002193!5.19e-41!112;UBERON:0002371!2.98e-39!80;UBERON:0001474!7.88e-35!86;UBERON:0002405!1.05e-31!115;UBERON:0004765!4.15e-27!101;UBERON:0001434!4.15e-27!101;UBERON:0007023!7.29e-16!115;UBERON:0003081!8.33e-14!216;UBERON:0002204!4.10e-11!167;UBERON:0002384!1.22e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.15e-75,76;UBERON:0001474,6.67e-69,82;UBERON:0002390,3.80e-68,98;UBERON:0003061,3.80e-68,98;UBERON:0002193,2.55e-62,108;UBERON:0004765,2.81e-61,90;UBERON:0002405,4.79e-61,93;UBERON:0001434,1.86e-53,100;UBERON:0003081,1.47e-26,203;UBERON:0002204,2.75e-25,167;UBERON:0002384,5.14e-24,371;UBERON:0000926,6.82e-11,315;UBERON:0004120,6.82e-11,315;UBERON:0006603,6.82e-11,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,2.36881557818649,1.23150884174919,1.33808328233255,1.57345710739562,0.383829398097213,1.08371286321253,0,0,0,0.309868802321207,0.426507697462265,1.46800219667424,1.10799081706375,3.81034450193269,2.38711957787437,2.23915474239924,2.59114932815184,2.57575567634187,4.9435401185052,7.55751887377619,3.63876091781724,6.74044207026485,9.86802931252382,8.3620720141678,6.04154023876516,9.47794614157672,8.27687804610048,6.89491361473237,9.68227025375739,4.06279459783025,7.71793592124679,12.8265890527188,10.3372802844739,10.7129362329816,3.85114832491312,10.8687311385837,4.61791820261403,14.9597743216224,8.95071976118658,9.28669563611469,8.5107783703671,15.5705562248894,5.27622197039161,13.5585558789252,6.5156653411535,7.26479403160043,9.20694089968912,7.59509729858123,7.39393502091796,8.07896339867165,7.54771123830153,1.68492946719743,4.8056605709282,1.44653028027372,2.85012743741249,3.18266683518544,2.73996230646951,8.79981222306614,8.19207916893197,11.5636203002262,7.25441378363062,9.20910770182829,8.62128659931725,5.2883589822789,10.494591299889,4.55370375287559,4.69789751496751,3.82273228125229,0,2.24203425192614,1.31692042387539,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0.25618263945135,0.520237390239513,0,0.276350017785848,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,10.3855165969499,7.31344896656922,14.0935438149997,1.90792499444274,2.85997455390064,2.97166001063652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.18568910348575,2.10603838625314,6.53977114070404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8110914833548,6.02708509718552,21.0833939483032,0,0,0,0,0,0,0.112085143993527,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,2.80428461064202,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,0,1.13929437434833,0.476463550915578,0,0,0,3.96562588147135,0,0,0,0.929015875628594,0.28853842595289,0,0,0.199579371432817,0.766021480529467,0,0,2.24637742490767,0.228234679033192,0,0,0.50787533340481,0,1.21079824314629,0.851692475380653,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0.703347082052564,0,0.329607748453519,0,0.996239941255349,1.38141957765574,0,0,0.369254416383208,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0,0,0.123563938946503,0.208843899010911,0.134802265961354,0.802577647298789,0.234264445725339,3.64909578431332,0,0,0.394584402849391,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684526894459965,0,0,1.05154941711726,0.279282401272254,0.229160424011684,0.717873024576814,0,0,0.446342914883745,0,0,0,0,0,0,0,0.931406652723629,0,0.136203406111576,0,0,0,9.22392955361152,22.4402566821805,0,0,0.236417121897595,0.0524545881349981,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0,0.146552233678082,0,0.258565912723101,0.26446520348538,0,0,1.38823636338003,0.157204305099666,4.97086866416635,2.97699613087171,0.395223263795889,1.94868157409433,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0.50313580350515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,21.6294942811721,8.76907946068197,9.48679286683896,0,0,0,2.39984875025916,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0.548257766857182,0.496211178389294,0,0,0,0,0.606965604236632,0,0.0887023701626388,3.57225361422916,0,0.203909198930495,0,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0.490751168076215,0,0,0.102662806856247,0,0.971421986118279,0,0,0,0,0,0,0.231522474323834,0.655678681511872,0,0.245148321753905,0,0.588925401344836,0.891139200981258,0,0,0.845855261818682,0.257831551894309,0.599646935549574,0,0,0,0,0,0.573358332605805,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0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| |||
|short_description=p4@HLA-DRA | |||
}} |
Latest revision as of 03:00, 18 September 2015
Short description: | p4@HLA-DRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HLA-DRA_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | -43bp_to_V00528_5end |
EntrezGene: | HLA-DRA |
HGNC: | 4947 |
UniProt: | Q29868 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.15e-75 | 76 |
bone element | 6.67e-69 | 82 |
hematopoietic system | 3.80e-68 | 98 |
blood island | 3.80e-68 | 98 |
hemolymphoid system | 2.55e-62 | 108 |
skeletal element | 2.81e-61 | 90 |
immune system | 4.79e-61 | 93 |
skeletal system | 1.86e-53 | 100 |
lateral plate mesoderm | 1.47e-26 | 203 |
musculoskeletal system | 2.75e-25 | 167 |
connective tissue | 5.14e-24 | 371 |
mesoderm | 6.82e-11 | 315 |
mesoderm-derived structure | 6.82e-11 | 315 |
presumptive mesoderm | 6.82e-11 | 315 |