FFCP PHASE1:Hg19::chr6:32938512..32938523,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3108 | |EntrezGene=3108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4934 | |HGNC=4934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000473725_5end | |association_with_transcript=-19bp_to_ENST00000473725_5end | ||
|cluster_id=chr6:32938512..32938523,- | |||
|description=CAGE_peak_4_at_HLA-DMA_5end | |description=CAGE_peak_4_at_HLA-DMA_5end | ||
|id=chr6:32938512..32938523,- | |id=chr6:32938512..32938523,- | ||
|ontology_enrichment_celltype=CL:0000860!5.43e-16!45;CL:0002057!3.68e-15!42;CL:0000738!3.72e-13!140;CL:0002031!8.44e-13!124;CL:0002087!8.19e-12!119;CL:0002032!3.85e-10!165;CL:0000837!3.85e-10!165;CL:0000037!5.08e-10!172;CL:0000566!5.08e-10!172;CL:0000839!9.59e-10!70;CL:0000988!1.32e-09!182;CL:0000557!2.93e-09!71;CL:0002194!5.25e-09!63;CL:0000576!5.25e-09!63;CL:0000040!5.25e-09!63;CL:0000559!5.25e-09!63;CL:0000766!1.16e-08!76;CL:0002009!1.44e-08!65;CL:0000134!2.27e-07!358;CL:0002320!4.89e-07!365;CL:0000219!7.01e-07!390 | |ontology_enrichment_celltype=CL:0000860!5.43e-16!45;CL:0002057!3.68e-15!42;CL:0000738!3.72e-13!140;CL:0002031!8.44e-13!124;CL:0002087!8.19e-12!119;CL:0002032!3.85e-10!165;CL:0000837!3.85e-10!165;CL:0000037!5.08e-10!172;CL:0000566!5.08e-10!172;CL:0000839!9.59e-10!70;CL:0000988!1.32e-09!182;CL:0000557!2.93e-09!71;CL:0002194!5.25e-09!63;CL:0000576!5.25e-09!63;CL:0000040!5.25e-09!63;CL:0000559!5.25e-09!63;CL:0000766!1.16e-08!76;CL:0002009!1.44e-08!65;CL:0000134!2.27e-07!358;CL:0002320!4.89e-07!365;CL:0000219!7.01e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.59e-56;33!CL:0002057;2.59e-56;33!CL:0000473;2.16e-38;39!CL:0000234;2.16e-38;39!CL:0000576;2.40e-25;48!CL:0000766;2.80e-12;69!CL:0002087;6.82e-08;104 | |ontology_enrichment_celltype_v019=CL:0000860;2.59e-56;33!CL:0002057;2.59e-56;33!CL:0000473;2.16e-38;39!CL:0000234;2.16e-38;39!CL:0000576;2.40e-25;48!CL:0000766;2.80e-12;69!CL:0002087;6.82e-08;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.56e-47,42;CL:0002057,1.56e-47,42;CL:0000473,1.62e-40,48;CL:0000234,1.62e-40,48;CL:0002194,1.02e-30,59;CL:0000576,1.02e-30,59;CL:0000040,1.02e-30,59;CL:0000559,1.02e-30,59;CL:0002009,1.86e-29,61;CL:0000839,1.23e-26,66;CL:0000557,4.01e-26,67;CL:0000766,9.06e-24,72;CL:0002087,1.04e-20,115;CL:0000738,1.49e-19,136;CL:0002031,1.89e-19,120;CL:0000763,2.19e-14,108;CL:0000049,2.19e-14,108;CL:0000037,6.48e-14,168;CL:0002032,5.23e-13,161;CL:0000837,5.23e-13,161;CL:0000988,1.04e-12,177;CL:0000048,5.77e-07,427;CL:0000134,5.82e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.86e-34;42 | |ontology_enrichment_development_v019=CL:0002057;1.86e-34;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.97e-08!80;UBERON:0001474!4.02e-08!86 | |ontology_enrichment_uberon=UBERON:0002371!2.97e-08!80;UBERON:0001474!4.02e-08!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0005904;1.82e-11;4!UBERON:0006947;2.96e-09;3!UBERON:0004054;2.96e-09;3 | |ontology_enrichment_uberon_v019=UBERON:0005904;1.82e-11;4!UBERON:0006947;2.96e-09;3!UBERON:0004054;2.96e-09;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.19e-24,76;UBERON:0001474,1.94e-21,82;UBERON:0004765,8.00e-19,90;UBERON:0002405,5.84e-18,93;UBERON:0002390,1.22e-16,98;UBERON:0003061,1.22e-16,98;UBERON:0001434,3.76e-16,100;UBERON:0003081,8.40e-16,203;UBERON:0002193,2.23e-14,108;UBERON:0002204,5.89e-13,167;UBERON:0005904,5.73e-12,4;UBERON:0006947,1.54e-09,3;UBERON:0004054,1.54e-09,3;UBERON:0000926,3.43e-09,315;UBERON:0004120,3.43e-09,315;UBERON:0006603,3.43e-09,315 | |||
|phase1_expression=1.2717486548939,0.642301571672949,0.140954404095971,0,0.893922188854576,0,0,0,0.261185628199839,0.491467873003018,0,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0.123121058076788,0.612002073732759,0,0,0.273748850145768,0.125542639594803,0.916960868975415,0.903106483949403,1.57421562627358,0.393364276848904,0.383829398097213,0,1.83884244895785,0.30120591877825,0,2.01414721508784,0.710846162437108,0,0,0.200544447470142,0,0.671746422719773,0,0.257575567634187,1.16318591023652,1.13362783106643,1.21292030593908,3.0215774797739,1.6446715520873,2.47765096716083,1.1507695692886,3.07392847834921,1.41889337933151,2.41321976515633,1.29096936716765,2.70852973188684,0.941211697713023,1.91034305040492,2.69668181334102,1.53041946185451,2.24650318953266,1.91801137739712,1.31940520074686,1.79517291859469,1.27867425159808,3.48251086354301,1.13477044938228,2.4912889959823,1.7587406567972,3.65038042894141,1.3031330682307,1.21079900526674,2.57794345191295,1.89877432464531,0.211255286311942,0.425208599930087,0.209658645508376,0.561643155732475,0.150176892841506,0.32145117339416,0,0,0.182664153764634,1.75996244461323,0,0.889509253863555,0,0.400395987036012,0,0.661044872784862,0.954053754535364,0,0.587237189370939,0.382273228125229,0,0,0,0.590129310341499,0,0,0,0,0.473447805734733,0,0.334231370655521,0.294605907474837,0,0.270803863765016,0.128091319725675,0,0.822189523018381,0.276350017785848,0,0,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0,0,0.127986611154418,0,0.710331756132051,0.821127996921047,0,0.267440195783507,0.289648807765598,2.43806866313962,0.670700859703636,0,0.361439152384566,1.50401373190767,0,0.795285947051099,0.973269740605272,0.283604451492204,0.221729397462564,0.263504357079378,0.458426764241994,0,0.370784442784429,0,0,0.26591592103773,0.476981248610684,1.14398982156026,0.371457501329565,0.198762407366705,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,2.25095607382472,0.860509862246441,0,1.12135520028461,1.06748995729705,0,0,0.808264032418128,0.490385709340376,0.302714855289863,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.206651562351531,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0.89694817844431,0.427114777637135,0.211931901159562,0,0.618315175430633,1.54584324027377,0,1.35021065793013,0.68205903612839,2.27190396819703,0.368199594569197,0.323292113637624,0.355009592516614,0.302256294682921,1.3564847384839,0.386521706326594,0.272746120590835,0,0.487894824518382,0.530119073285941,0.116193942869518,0.10366105501537,0,0.36497735907583,1.56449532329816,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0,0.588664395376038,0,1.4763109092493,0,0,0,0,0.982827216677626,0,1.32438929824395,0.983907508344908,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0.790204397959275,4.29243081047436,0,0,0,0.93733833986777,0,0.283550194484773,0,0,0,0.492663237895943,0.528290604079356,0.414656231081544,0.432359860250884,0.6312121671319,0.063497894292169,0,0,6.84289784090821,0.308482478109971,0.300343057843917,0,0.224262168690721,0,0,0,0,0,0.797814349754612,0,0,0,0.266422179016099,0,1.08524321078289,0.823240336780769,0,0.355391948742546,0,0.602878754119172,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0.205476322550383,0.179060963239896,0.336255431980582,0.591092280605782,0.215627574859517,0.513372145118994,0.254094624222463,0,0,0,0,0.749007023947182,0,0,0,0,0,0.207970861530807,0.356857977594324,0,0,0,0,0,0.664225598535437,0.368738337083406,0.173767228936166,0.391602314925481,0.343143423810856,0,0,0.106727557803444,0.606255142892519,0,0.604780586659361,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0,0.164254312027618,0.519254429183621,0,1.0877350463246,0.601519410909855,0.0920809889358963,0.459257792658427,0,0.393373244878272,0,0.15403067420883,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0.223874754722178,0,0.261435451024901,0,0.328014645699706,0,0.721287081534056,0.640986253728404,0.495056999523528,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0.15350367472613,0.275673144969061,0.322260734604821,0.290033387828457,0.0852266274161009,0.267096106940212,0,0.192190067365106,0.382838137483752,0.2023155617111,0,0,1.3940745403212,0,0,0,0,0.858749320451947,0,0,0.190630193923825,0.767693373934002,0,1.90921948755562,0.78494864019923,0.179872457583315,0.54907405947211,0.235624804691373,0,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.272999822815972,0.424216295861138,1.13008116620243,1.10273068709225,0,0,0,0,0.405820753925408,0.30982349809975,1.12678241012897,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0.238231775457789,0,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| ||
|short_description=p4@HLA-DMA | |short_description=p4@HLA-DMA | ||
}} | }} |
Latest revision as of 04:47, 18 September 2015
Short description: | p4@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HLA-DMA_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000473725_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.56e-47 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.56e-47 | 42 |
defensive cell | 1.62e-40 | 48 |
phagocyte | 1.62e-40 | 48 |
monopoietic cell | 1.02e-30 | 59 |
monocyte | 1.02e-30 | 59 |
monoblast | 1.02e-30 | 59 |
promonocyte | 1.02e-30 | 59 |
macrophage dendritic cell progenitor | 1.86e-29 | 61 |
myeloid lineage restricted progenitor cell | 1.23e-26 | 66 |
granulocyte monocyte progenitor cell | 4.01e-26 | 67 |
myeloid leukocyte | 9.06e-24 | 72 |
nongranular leukocyte | 1.04e-20 | 115 |
leukocyte | 1.49e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 1.89e-19 | 120 |
myeloid cell | 2.19e-14 | 108 |
common myeloid progenitor | 2.19e-14 | 108 |
hematopoietic stem cell | 6.48e-14 | 168 |
hematopoietic oligopotent progenitor cell | 5.23e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.23e-13 | 161 |
hematopoietic cell | 1.04e-12 | 177 |
multi fate stem cell | 5.77e-07 | 427 |
mesenchymal cell | 5.82e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.19e-24 | 76 |
bone element | 1.94e-21 | 82 |
skeletal element | 8.00e-19 | 90 |
immune system | 5.84e-18 | 93 |
hematopoietic system | 1.22e-16 | 98 |
blood island | 1.22e-16 | 98 |
skeletal system | 3.76e-16 | 100 |
lateral plate mesoderm | 8.40e-16 | 203 |
hemolymphoid system | 2.23e-14 | 108 |
musculoskeletal system | 5.89e-13 | 167 |
duct of male reproductive system | 5.73e-12 | 4 |
male genital duct | 1.54e-09 | 3 |
internal male genitalia | 1.54e-09 | 3 |
mesoderm | 3.43e-09 | 315 |
mesoderm-derived structure | 3.43e-09 | 315 |
presumptive mesoderm | 3.43e-09 | 315 |