FFCP PHASE1:Hg19::chr10:48439197..48439208,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2662 | |EntrezGene=2662 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4215 | |HGNC=4215 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_uc001jfb.2,uc009xnp.2,uc009xnq.1_5end | |association_with_transcript=-31bp_to_uc001jfb.2,uc009xnp.2,uc009xnq.1_5end | ||
|cluster_id=chr10:48439197..48439208,- | |||
|coexpression_cluster_id=C152 | |coexpression_cluster_id=C152 | ||
|description=CAGE_peak_3_at_GDF10_5end | |description=CAGE_peak_3_at_GDF10_5end | ||
|id=chr10:48439197..48439208,- | |id=chr10:48439197..48439208,- | ||
|ontology_enrichment_celltype=CL:0002603!5.99e-09!3;CL:0000064!6.51e-08!3;CL:0005012!6.51e-08!3;CL:0000067!6.51e-08!3;CL:0002304!6.51e-08!3 | |ontology_enrichment_celltype=CL:0002603!5.99e-09!3;CL:0000064!6.51e-08!3;CL:0005012!6.51e-08!3;CL:0000067!6.51e-08!3;CL:0002304!6.51e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002603;1.47e-30;3!CL:0000128;1.02e-13;7!CL:0000126;1.02e-13;7!CL:0000127;1.02e-13;7!CL:0000064;1.30e-08;3!CL:0000067;1.30e-08;3!CL:0005012;1.30e-08;3!CL:0002304;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,1.47e-30,3;CL:0000128,1.02e-13,7;CL:0000126,1.02e-13,7;CL:0000127,1.02e-13,7;CL:0002453,1.02e-13,7;CL:0000064,1.40e-08,3;CL:0000067,1.40e-08,3;CL:0005012,1.40e-08,3;CL:0002304,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0010115;4.10e-23;1!UBERON:0006215;1.30e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;7.74e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.46e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0002346!3.34e-33!90;UBERON:0007023!6.69e-32!115;UBERON:0002616!9.38e-32!59;UBERON:0001049!7.15e-31!57;UBERON:0005068!7.15e-31!57;UBERON:0006241!7.15e-31!57;UBERON:0007135!7.15e-31!57;UBERON:0003075!3.60e-29!86;UBERON:0007284!3.60e-29!86;UBERON:0000955!3.32e-27!69;UBERON:0006238!3.32e-27!69;UBERON:0003080!4.61e-27!42;UBERON:0003056!1.05e-25!61;UBERON:0002780!3.28e-25!41;UBERON:0001890!3.28e-25!41;UBERON:0006240!3.28e-25!41;UBERON:0005743!1.99e-23!86;UBERON:0001017!2.64e-23!82;UBERON:0000153!4.34e-23!129;UBERON:0007811!4.34e-23!129;UBERON:0000033!5.97e-22!123;UBERON:0001893!1.60e-20!34;UBERON:0000073!2.43e-20!94;UBERON:0001016!2.43e-20!94;UBERON:0002791!3.78e-19!33;UBERON:0001950!6.53e-18!20;UBERON:0001869!1.37e-17!32;UBERON:0000924!2.03e-17!173;UBERON:0006601!2.03e-17!173;UBERON:0002020!1.79e-16!34;UBERON:0003528!1.79e-16!34;UBERON:0002619!4.76e-16!22;UBERON:0004121!6.64e-15!169;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000200!8.67e-13!6;UBERON:0002037!2.30e-11!6;UBERON:0006215!2.30e-11!6;UBERON:0000025!1.03e-08!194;UBERON:0000477!3.68e-08!286;UBERON:0001778!6.51e-08!3;UBERON:0001775!6.51e-08!3;UBERON:0002021!9.85e-08!5;UBERON:0000483!2.04e-07!309;UBERON:0002680!2.19e-07!9;UBERON:0001895!2.19e-07!9;UBERON:0010092!2.19e-07!9;UBERON:0004111!2.25e-07!241;UBERON:0000119!3.11e-07!312;UBERON:0000064!3.22e-07!219;UBERON:0004733!3.31e-07!12;UBERON:0002028!3.31e-07!12;UBERON:0007277!3.31e-07!12;UBERON:0000481!3.99e-07!347;UBERON:0000475!4.55e-07!365;UBERON:0002771!9.21e-07!3 | |ontology_enrichment_uberon=UBERON:0002346!3.34e-33!90;UBERON:0007023!6.69e-32!115;UBERON:0002616!9.38e-32!59;UBERON:0001049!7.15e-31!57;UBERON:0005068!7.15e-31!57;UBERON:0006241!7.15e-31!57;UBERON:0007135!7.15e-31!57;UBERON:0003075!3.60e-29!86;UBERON:0007284!3.60e-29!86;UBERON:0000955!3.32e-27!69;UBERON:0006238!3.32e-27!69;UBERON:0003080!4.61e-27!42;UBERON:0003056!1.05e-25!61;UBERON:0002780!3.28e-25!41;UBERON:0001890!3.28e-25!41;UBERON:0006240!3.28e-25!41;UBERON:0005743!1.99e-23!86;UBERON:0001017!2.64e-23!82;UBERON:0000153!4.34e-23!129;UBERON:0007811!4.34e-23!129;UBERON:0000033!5.97e-22!123;UBERON:0001893!1.60e-20!34;UBERON:0000073!2.43e-20!94;UBERON:0001016!2.43e-20!94;UBERON:0002791!3.78e-19!33;UBERON:0001950!6.53e-18!20;UBERON:0001869!1.37e-17!32;UBERON:0000924!2.03e-17!173;UBERON:0006601!2.03e-17!173;UBERON:0002020!1.79e-16!34;UBERON:0003528!1.79e-16!34;UBERON:0002619!4.76e-16!22;UBERON:0004121!6.64e-15!169;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000200!8.67e-13!6;UBERON:0002037!2.30e-11!6;UBERON:0006215!2.30e-11!6;UBERON:0000025!1.03e-08!194;UBERON:0000477!3.68e-08!286;UBERON:0001778!6.51e-08!3;UBERON:0001775!6.51e-08!3;UBERON:0002021!9.85e-08!5;UBERON:0000483!2.04e-07!309;UBERON:0002680!2.19e-07!9;UBERON:0001895!2.19e-07!9;UBERON:0010092!2.19e-07!9;UBERON:0004111!2.25e-07!241;UBERON:0000119!3.11e-07!312;UBERON:0000064!3.22e-07!219;UBERON:0004733!3.31e-07!12;UBERON:0002028!3.31e-07!12;UBERON:0007277!3.31e-07!12;UBERON:0000481!3.99e-07!347;UBERON:0000475!4.55e-07!365;UBERON:0002771!9.21e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.05e-33;6!UBERON:0002363;4.10e-23;1!UBERON:0002346;4.60e-23;4!UBERON:0000923;4.60e-23;4!UBERON:0010316;4.60e-23;4!UBERON:0005291;4.60e-23;4!UBERON:0002680;9.35e-23;9!UBERON:0001895;9.35e-23;9!UBERON:0002050;1.13e-18;5!UBERON:0005423;1.13e-18;5!UBERON:0004733;2.91e-17;12!UBERON:0002028;2.91e-17;12!UBERON:0004732;5.42e-16;13!UBERON:0001905;2.07e-12;2!UBERON:0002757;2.07e-12;2!UBERON:0010134;2.07e-12;2!UBERON:0005408;2.07e-12;2!UBERON:0001899;2.07e-12;2!UBERON:0002360;2.90e-12;2!UBERON:0000094;2.90e-12;2!UBERON:0010743;2.90e-12;2!UBERON:0001778;1.30e-08;3!UBERON:0001775;1.30e-08;3!UBERON:0003296;7.69e-07;4!UBERON:0010133;7.69e-07;4!UBERON:0002784;7.69e-07;4!UBERON:0000488;9.10e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-33,6;UBERON:0006215,1.05e-33,6;UBERON:0002363,3.28e-23,1;UBERON:0007645,3.28e-23,1;UBERON:0007647,3.28e-23,1;UBERON:0010115,3.28e-23,1;UBERON:0002680,9.35e-23,9;UBERON:0001895,9.35e-23,9;UBERON:0010092,9.35e-23,9;UBERON:0004733,2.91e-17,12;UBERON:0002028,2.91e-17,12;UBERON:0007277,2.91e-17,12;UBERON:0004732,5.42e-16,13;UBERON:0003076,5.89e-14,15;UBERON:0003057,5.89e-14,15;UBERON:0001905,2.07e-12,2;UBERON:0002757,2.07e-12,2;UBERON:0010134,2.07e-12,2;UBERON:0005408,2.07e-12,2;UBERON:0001899,2.07e-12,2;UBERON:0002360,2.59e-12,2;UBERON:0000094,2.59e-12,2;UBERON:0010743,2.59e-12,2;UBERON:0002346,2.65e-12,86;UBERON:0001778,1.40e-08,3;UBERON:0001775,1.40e-08,3;UBERON:0004121,7.05e-08,171;UBERON:0000924,7.05e-08,171;UBERON:0006601,7.05e-08,171;UBERON:0000073,6.11e-07,53;UBERON:0002616,6.11e-07,53;UBERON:0003296,7.70e-07,4;UBERON:0010133,7.70e-07,4;UBERON:0002784,7.70e-07,4;UBERON:0001017,8.18e-07,81;UBERON:0003075,8.39e-07,82;UBERON:0007284,8.39e-07,82;UBERON:0000488,9.63e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80172126499473,0.612002073732759,5.32873026512749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,1.10864698731282,0.43917392846563,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0.884634079449797,1.18219047581419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06287460050841,0.247871528518004,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0.756215088665154,0.345786262321089,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.253663240775627,0.546974809018219,0.548257766857182,0,11.4316308833753,0,3.74991285114801,0.336283722218824,0.606965604236632,0,0,0,0,0,0.328863867814245,0,0,0.235479278551542,0.471346769748006,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.437119121007915,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0.203974470572744,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.606229585745915,0.267964130156178,0.829169439458779,0,0.213233981900981,0.714193294391221,0,0,0,0.318235791390825,0,0.217716747896961,0.342233301085281,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80172126499473,0.612002073732759,5.32873026512749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,1.10864698731282,0.43917392846563,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0.884634079449797,1.18219047581419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06287460050841,0.247871528518004,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0.756215088665154,0.345786262321089,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.253663240775627,0.546974809018219,0.548257766857182,0,11.4316308833753,0,3.74991285114801,0.336283722218824,0.606965604236632,0,0,0,0,0,0.328863867814245,0,0,0.235479278551542,0.471346769748006,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.437119121007915,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0.203974470572744,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.606229585745915,0.267964130156178,0.829169439458779,0,0.213233981900981,0.714193294391221,0,0,0,0.318235791390825,0,0.217716747896961,0.342233301085281,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | ||
|short_description=p3@GDF10 | |short_description=p3@GDF10 | ||
}} | }} |
Latest revision as of 08:28, 18 September 2015
Short description: | p3@GDF10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GDF10_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -31bp_to_uc001jfb.2, uc009xnp.2, uc009xnq.1_5end |
EntrezGene: | GDF10 |
HGNC: | 4215 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 1.47e-30 | 3 |
oligodendrocyte | 1.02e-13 | 7 |
macroglial cell | 1.02e-13 | 7 |
astrocyte | 1.02e-13 | 7 |
oligodendrocyte precursor cell | 1.02e-13 | 7 |
ciliated cell | 1.40e-08 | 3 |
ciliated epithelial cell | 1.40e-08 | 3 |
multi-ciliated epithelial cell | 1.40e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.46e-10 | 10 |