FFCP PHASE1:Hg19::chr7:35734486..35734515,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64224 | |EntrezGene=64224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21915 | |HGNC=21915 | ||
|TSSclassifier=strong | |||
|UniProt=C9JV48 | |UniProt=C9JV48 | ||
|association_with_transcript=117bp_to_ENST00000427455_5end | |association_with_transcript=117bp_to_ENST00000427455_5end | ||
|cluster_id=chr7:35734486..35734515,- | |||
|description=CAGE_peak_3_at_HERPUD2_5end | |description=CAGE_peak_3_at_HERPUD2_5end | ||
|id=chr7:35734486..35734515,- | |id=chr7:35734486..35734515,- | ||
|ontology_enrichment_celltype=CL:0000766!4.06e-21!76;CL:0000557!4.17e-19!71;CL:0002194!2.27e-17!63;CL:0000576!2.27e-17!63;CL:0000040!2.27e-17!63;CL:0000559!2.27e-17!63;CL:0002057!2.41e-17!42;CL:0002009!2.59e-17!65;CL:0000839!5.16e-17!70;CL:0000860!2.09e-15!45;CL:0002320!2.62e-12!365;CL:0000134!5.99e-12!358;CL:0000763!7.12e-12!112;CL:0000049!7.12e-12!112;CL:0000048!1.13e-11!430;CL:0000723!5.09e-11!436;CL:0002371!5.34e-11!591;CL:0000738!1.27e-09!140;CL:0000063!2.48e-09!578;CL:0000034!7.29e-09!444;CL:0000144!9.65e-09!625;CL:0000219!1.67e-08!390;CL:0002087!3.21e-08!119;CL:0002031!6.44e-08!124;CL:0000548!2.03e-07!679;CL:0000004!2.03e-07!679;CL:0000255!2.03e-07!679;CL:0000012!8.78e-07!682 | |ontology_enrichment_celltype=CL:0000766!4.06e-21!76;CL:0000557!4.17e-19!71;CL:0002194!2.27e-17!63;CL:0000576!2.27e-17!63;CL:0000040!2.27e-17!63;CL:0000559!2.27e-17!63;CL:0002057!2.41e-17!42;CL:0002009!2.59e-17!65;CL:0000839!5.16e-17!70;CL:0000860!2.09e-15!45;CL:0002320!2.62e-12!365;CL:0000134!5.99e-12!358;CL:0000763!7.12e-12!112;CL:0000049!7.12e-12!112;CL:0000048!1.13e-11!430;CL:0000723!5.09e-11!436;CL:0002371!5.34e-11!591;CL:0000738!1.27e-09!140;CL:0000063!2.48e-09!578;CL:0000034!7.29e-09!444;CL:0000144!9.65e-09!625;CL:0000219!1.67e-08!390;CL:0002087!3.21e-08!119;CL:0002031!6.44e-08!124;CL:0000548!2.03e-07!679;CL:0000004!2.03e-07!679;CL:0000255!2.03e-07!679;CL:0000012!8.78e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.37e-11;33!CL:0002057;1.37e-11;33!CL:0000473;2.03e-11;39!CL:0000234;2.03e-11;39!CL:0000576;2.64e-11;48!CL:0000766;1.89e-10;69 | |ontology_enrichment_celltype_v019=CL:0000860;1.37e-11;33!CL:0002057;1.37e-11;33!CL:0000473;2.03e-11;39!CL:0000234;2.03e-11;39!CL:0000576;2.64e-11;48!CL:0000766;1.89e-10;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.10e-22,72;CL:0000557,4.52e-20,67;CL:0000473,3.05e-19,48;CL:0000234,3.05e-19,48;CL:0002194,2.31e-18,59;CL:0000576,2.31e-18,59;CL:0000040,2.31e-18,59;CL:0000559,2.31e-18,59;CL:0002009,2.87e-18,61;CL:0000839,6.30e-18,66;CL:0000860,2.31e-17,42;CL:0002057,2.31e-17,42;CL:0002320,1.51e-12,361;CL:0000134,3.46e-12,354;CL:0000763,3.70e-12,108;CL:0000049,3.70e-12,108;CL:0000048,7.29e-12,427;CL:0000723,3.15e-11,433;CL:0000738,6.82e-10,136;CL:0000034,4.29e-09,441;CL:0000219,8.56e-09,386;CL:0002087,2.03e-08,115;CL:0002031,4.01e-08,120 | |||
|ontology_enrichment_development_v019=CL:0002057;5.90e-13;42 | |ontology_enrichment_development_v019=CL:0002057;5.90e-13;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.78e-20!80;UBERON:0001474!1.59e-17!86;UBERON:0002405!6.93e-16!115;UBERON:0004765!8.02e-16!101;UBERON:0001434!8.02e-16!101;UBERON:0002193!1.78e-15!112;UBERON:0002390!5.55e-15!102;UBERON:0003061!5.55e-15!102;UBERON:0002204!5.69e-15!167;UBERON:0003081!2.03e-12!216;UBERON:0002384!3.01e-12!375 | |ontology_enrichment_uberon=UBERON:0002371!4.78e-20!80;UBERON:0001474!1.59e-17!86;UBERON:0002405!6.93e-16!115;UBERON:0004765!8.02e-16!101;UBERON:0001434!8.02e-16!101;UBERON:0002193!1.78e-15!112;UBERON:0002390!5.55e-15!102;UBERON:0003061!5.55e-15!102;UBERON:0002204!5.69e-15!167;UBERON:0003081!2.03e-12!216;UBERON:0002384!3.01e-12!375 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.16e-21,76;UBERON:0002405,5.66e-19,93;UBERON:0001474,3.39e-18,82;UBERON:0001434,1.86e-16,100;UBERON:0004765,2.13e-16,90;UBERON:0002193,7.15e-16,108;UBERON:0002204,1.98e-15,167;UBERON:0002390,2.07e-15,98;UBERON:0003061,2.07e-15,98;UBERON:0003081,9.32e-14,203;UBERON:0002384,1.88e-12,371;UBERON:0000926,6.54e-11,315;UBERON:0004120,6.54e-11,315;UBERON:0006603,6.54e-11,315 | |||
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| ||
|short_description=p3@HERPUD2 | |short_description=p3@HERPUD2 | ||
}} | }} |
Latest revision as of 09:16, 18 September 2015
Short description: | p3@HERPUD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HERPUD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 117bp_to_ENST00000427455_5end |
EntrezGene: | HERPUD2 |
HGNC: | 21915 |
UniProt: | C9JV48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.10e-22 | 72 |
granulocyte monocyte progenitor cell | 4.52e-20 | 67 |
defensive cell | 3.05e-19 | 48 |
phagocyte | 3.05e-19 | 48 |
monopoietic cell | 2.31e-18 | 59 |
monocyte | 2.31e-18 | 59 |
monoblast | 2.31e-18 | 59 |
promonocyte | 2.31e-18 | 59 |
macrophage dendritic cell progenitor | 2.87e-18 | 61 |
myeloid lineage restricted progenitor cell | 6.30e-18 | 66 |
classical monocyte | 2.31e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.31e-17 | 42 |
connective tissue cell | 1.51e-12 | 361 |
mesenchymal cell | 3.46e-12 | 354 |
myeloid cell | 3.70e-12 | 108 |
common myeloid progenitor | 3.70e-12 | 108 |
multi fate stem cell | 7.29e-12 | 427 |
somatic stem cell | 3.15e-11 | 433 |
leukocyte | 6.82e-10 | 136 |
stem cell | 4.29e-09 | 441 |
motile cell | 8.56e-09 | 386 |
nongranular leukocyte | 2.03e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 4.01e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.16e-21 | 76 |
immune system | 5.66e-19 | 93 |
bone element | 3.39e-18 | 82 |
skeletal system | 1.86e-16 | 100 |
skeletal element | 2.13e-16 | 90 |
hemolymphoid system | 7.15e-16 | 108 |
musculoskeletal system | 1.98e-15 | 167 |
hematopoietic system | 2.07e-15 | 98 |
blood island | 2.07e-15 | 98 |
lateral plate mesoderm | 9.32e-14 | 203 |
connective tissue | 1.88e-12 | 371 |
mesoderm | 6.54e-11 | 315 |
mesoderm-derived structure | 6.54e-11 | 315 |
presumptive mesoderm | 6.54e-11 | 315 |