FFCP PHASE1:Hg19::chr16:89238149..89238187,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1013 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1754 | |||
|TSSclassifier=strong | |||
|UniProt=P55291 | |||
|association_with_transcript=0bp_to_ENST00000289746,ENST00000521087,ENST00000524089,NM_004933,uc002fmt.2,uc010cij.1_5end | |||
|cluster_id=chr16:89238149..89238187,+ | |||
|coexpression_cluster_id=C134 | |||
|description=CAGE_peak_1_at_CDH15_5end | |||
|id=chr16:89238149..89238187,+ | |||
|ontology_enrichment_celltype=CL:0000188!1.77e-10!9 | |||
|ontology_enrichment_celltype_v019=CL:0000188;1.36e-27;9!CL:0000680;1.37e-21;7!CL:0000056;1.82e-13;4!CL:0000515;1.34e-10;3!CL:0000594;7.45e-10;3!CL:0002575;2.07e-07;2!CL:0002321;6.96e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.15e-27,9;CL:0000515,1.82e-13,4;CL:0000594,6.40e-10,3;CL:0000680,1.15e-08,58;CL:0000056,1.15e-08,58;CL:0000355,1.15e-08,58;CL:0002575,2.20e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000515;1.82e-13;4!UBERON:0006215;7.29e-11;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004733!4.14e-09!12;UBERON:0002028!4.14e-09!12;UBERON:0007277!4.14e-09!12;UBERON:0002680!9.65e-09!9;UBERON:0001895!9.65e-09!9;UBERON:0010092!9.65e-09!9;UBERON:0004732!3.95e-08!13;UBERON:0003076!5.20e-08!15;UBERON:0003057!5.20e-08!15;UBERON:0002037!2.62e-07!6;UBERON:0006215!2.62e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;6.53e-49;16!UBERON:0002036;6.53e-49;16!UBERON:0002385;8.44e-23;31!UBERON:0001015;8.44e-23;31!UBERON:0000383;8.44e-23;31!UBERON:0002037;2.31e-13;6!UBERON:0002680;4.19e-12;9!UBERON:0001895;4.19e-12;9!UBERON:0004733;6.66e-12;12!UBERON:0002028;6.66e-12;12!UBERON:0004732;6.65e-11;13!UBERON:0002204;9.83e-09;70!UBERON:0005090;1.01e-07;2!UBERON:0001630;1.01e-07;2!UBERON:0000341;2.42e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,8.39e-14,62;UBERON:0002036,8.39e-14,62;UBERON:0003082,8.39e-14,62;UBERON:0002037,2.31e-13,6;UBERON:0006215,2.31e-13,6;UBERON:0002385,3.22e-13,64;UBERON:0001015,3.22e-13,64;UBERON:0000383,3.22e-13,64;UBERON:0002680,4.87e-12,9;UBERON:0001895,4.87e-12,9;UBERON:0010092,4.87e-12,9;UBERON:0004733,7.45e-12,12;UBERON:0002028,7.45e-12,12;UBERON:0007277,7.45e-12,12;UBERON:0002329,1.93e-11,71;UBERON:0003059,1.93e-11,71;UBERON:0007282,1.93e-11,71;UBERON:0004290,1.93e-11,71;UBERON:0009618,1.93e-11,71;UBERON:0003077,3.24e-11,72;UBERON:0007285,3.24e-11,72;UBERON:0007524,5.35e-11,73;UBERON:0004732,7.36e-11,13;UBERON:0000486,3.24e-10,83;UBERON:0007503,5.42e-10,78;UBERON:0005256,1.04e-09,122;UBERON:0003076,2.87e-09,15;UBERON:0003057,2.87e-09,15;UBERON:0005090,1.02e-07,2;UBERON:0001630,1.02e-07,2;UBERON:0000341,2.42e-07,2;UBERON:0002204,8.71e-07,167 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0.984968464614303,3.87601313364081,2.5076377718247,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,0,0.579386075843295,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.500474079487857,0,0,1.22595118319608,0.300476117813194,0.226864366320042,0,0,0,0.300091096084402,0,1.03056216018252,0.37223371266318,0,0,0,0,0,0,0,0.169560592310488,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.236613600079688,0,0,0,0,0.237270619111097,0,0.196221465125346,0.38474715694639,0,30.8531902367581,0.4115740113314,42.6325263018072,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,2.83698264046557,0.266422179016099,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,25.6746429073293,33.0101379202081,26.9173982541002,71.2662633694784,0.112085143993527,0,0,0,0,0,0.773288812777695,0.167516265334349,1.27587750330633,0,0,0,0,1.00034104211935,0,0,0,0,0.117141414992713,0,0,0,0,0,0,2.15381273209015,117.355050943313,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0.114814448164607,0.546273504020151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,49.6306499315421,51.6509469502881,0,0,0,132.052201187039,9.85911149533724,21.1835071122059,44.934722629957,1.50388342815583,13.4865525340233,31.3633988891251,151.265428563807,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,4.74569137078089,0,0,0,0,0,0.179872457583315,0,0,0,0,0,1.46290121726877,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0,0,0,0,0.659006605437454,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0.111443384277478,0,0,0,0,0,0,0,0,0.422250816255987,0.796991953004279,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0.349839999984783,0,0.227586896570999,0,0.472775363535873,3.10269035917318,0,0,0,0,36.6196167161,82.6027071686248,98.1218094925778,1.75508317723178,0.762569244632931,0,0.153900517007594,0,0.23056390438806,0.0897576444097721,0,0,0,0,0,0.627921025580099,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.067401132980677,52.1675470744213,0,0,0,0.485560759068186,0,0,0,0.505492637027904,0.300646838828985,0.414752765588989,0,0,0.627865836814451,0,0,0.277349346026277,0.347119476670262,0.195984794828755,0.261177619741208,4.36816670605075,0.343972064943233,0,0.0730893170861856,0,1.26085721434945,0.176512253383001,1.58186518546373,0,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0,0,1.22397861163586,0,0,0,0,0,0.788662062837943,0,0.458320848023367,0,0,0,0,0.134366944973453,0,0,0.157566364614447,0.164831716762333,0.0674035438541849,0.0984274815147488,0,0,0,0,0.137539436597234,0.83088067605837,0,0,0.182248669974074,0,0,0.891727998294968,0.105600336519406,0,0.191915197319445,0,0,0.76280561296425,0,0,0,0,0,0,1.69968137280189,1.31897010310274,1.32506888912221,0.129282956361551,0.26446520348538,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,3.99344585532668,0.496771223531068,0.553394539744923,0,0.606596470166591,0,0,0.468334905806882,0.724605143054126,0,0,0,0.568209015825267,0.251567901752575,8.00830099436882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,205.214243272198,0.343395705182793,0,1.26184898228651,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,2.94848863961771,0,0.211312123358627,0,0,0.172214979660816,0,0,0,0,1.27894371303652,0.107824811396682,0,0.109209638192014,0,0,0.123935764259002,0,0.318004350653419,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,5.00553364355231,0.235939446695481,0,0,0,0,44.3583175319293,0,0.40341013740704,1.56302802246618,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,13.3977018165109,0,0.255524855279191,0.535701835878287,0.336283722218824,0,0,0.79832133146375,0.115233987555779,0,1.15548546060614,0.0657727735628491,0.236387681767936,0.778619813244484,0.078493092850514,0,0,0,0,0,0.142953088353313,2.68623139945635,0,38.7703947234752,0,0,0,0,0,0,0,0,0,0,0,0.11185543179779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| |||
|short_description=p1@CDH15 | |||
}} |
Latest revision as of 11:01, 18 September 2015
Short description: | p1@CDH15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDH15_5end |
Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
Association with transcript: | 0bp_to_ENST00000289746, ENST00000521087, ENST00000524089, NM_004933, uc002fmt.2, uc010cij.1_5end |
EntrezGene: | CDH15 |
HGNC: | 1754 |
UniProt: | P55291 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.15e-27 | 9 |
skeletal muscle myoblast | 1.82e-13 | 4 |
skeletal muscle satellite cell | 6.40e-10 | 3 |
muscle precursor cell | 1.15e-08 | 58 |
myoblast | 1.15e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.15e-08 | 58 |
central nervous system pericyte | 2.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 8.39e-14 | 62 |
striated muscle tissue | 8.39e-14 | 62 |
myotome | 8.39e-14 | 62 |
cerebellum | 2.31e-13 | 6 |
rhombic lip | 2.31e-13 | 6 |
muscle tissue | 3.22e-13 | 64 |
musculature | 3.22e-13 | 64 |
musculature of body | 3.22e-13 | 64 |
regional part of metencephalon | 4.87e-12 | 9 |
metencephalon | 4.87e-12 | 9 |
future metencephalon | 4.87e-12 | 9 |
segmental subdivision of hindbrain | 7.45e-12 | 12 |
hindbrain | 7.45e-12 | 12 |
presumptive hindbrain | 7.45e-12 | 12 |
somite | 1.93e-11 | 71 |
presomitic mesoderm | 1.93e-11 | 71 |
presumptive segmental plate | 1.93e-11 | 71 |
dermomyotome | 1.93e-11 | 71 |
trunk paraxial mesoderm | 1.93e-11 | 71 |
paraxial mesoderm | 3.24e-11 | 72 |
presumptive paraxial mesoderm | 3.24e-11 | 72 |
dense mesenchyme tissue | 5.35e-11 | 73 |
segmental subdivision of nervous system | 7.36e-11 | 13 |
multilaminar epithelium | 3.24e-10 | 83 |
epithelial vesicle | 5.42e-10 | 78 |
trunk mesenchyme | 1.04e-09 | 122 |
posterior neural tube | 2.87e-09 | 15 |
chordal neural plate | 2.87e-09 | 15 |
muscle structure | 1.02e-07 | 2 |
muscle organ | 1.02e-07 | 2 |
throat | 2.42e-07 | 2 |
musculoskeletal system | 8.71e-07 | 167 |