FFCP PHASE1:Hg19::chr7:39989218..39989299,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8621 | |EntrezGene=8621 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1733 | |HGNC=1733 | ||
|TSSclassifier=strong | |||
|UniProt=Q14004 | |UniProt=Q14004 | ||
|association_with_transcript=-336bp_to_ENST00000181839_5end | |association_with_transcript=-336bp_to_ENST00000181839_5end | ||
|cluster_id=chr7:39989218..39989299,+ | |||
|description=CAGE_peak_4_at_CDK13_5end | |description=CAGE_peak_4_at_CDK13_5end | ||
|id=chr7:39989218..39989299,+ | |id=chr7:39989218..39989299,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.26e-13!140;CL:0002031!5.71e-11!124;CL:0002087!7.15e-11!119;CL:0000037!2.21e-10!172;CL:0000566!2.21e-10!172;CL:0002032!8.94e-10!165;CL:0000837!8.94e-10!165;CL:0000542!8.02e-09!53;CL:0000051!8.02e-09!53;CL:0000838!1.71e-08!52;CL:0000988!6.38e-08!182;CL:0000791!3.00e-07!18;CL:0000789!3.00e-07!18;CL:0002420!3.00e-07!18;CL:0002419!3.00e-07!18;CL:0000790!3.00e-07!18 | |ontology_enrichment_celltype=CL:0000738!1.26e-13!140;CL:0002031!5.71e-11!124;CL:0002087!7.15e-11!119;CL:0000037!2.21e-10!172;CL:0000566!2.21e-10!172;CL:0002032!8.94e-10!165;CL:0000837!8.94e-10!165;CL:0000542!8.02e-09!53;CL:0000051!8.02e-09!53;CL:0000838!1.71e-08!52;CL:0000988!6.38e-08!182;CL:0000791!3.00e-07!18;CL:0000789!3.00e-07!18;CL:0002420!3.00e-07!18;CL:0002419!3.00e-07!18;CL:0000790!3.00e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.14e-08;18!CL:0000789;2.14e-08;18!CL:0002419;2.14e-08;18!CL:0000542;4.26e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.08e-16,136;CL:0002031,8.34e-13,120;CL:0002087,1.03e-12,115;CL:0000037,1.51e-11,168;CL:0002032,1.06e-10,161;CL:0000837,1.06e-10,161;CL:0000542,2.41e-10,53;CL:0000051,2.41e-10,53;CL:0000838,5.72e-10,52;CL:0000988,3.62e-09,177;CL:0000791,2.78e-08,18;CL:0000789,2.78e-08,18;CL:0002420,2.78e-08,18;CL:0002419,2.78e-08,18;CL:0000790,2.78e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;2.14e-08;18!CL:0000051;4.26e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.23e-17!115;UBERON:0001049!5.18e-17!57;UBERON:0005068!5.18e-17!57;UBERON:0006241!5.18e-17!57;UBERON:0007135!5.18e-17!57;UBERON:0000073!1.51e-16!94;UBERON:0001016!1.51e-16!94;UBERON:0001017!2.52e-16!82;UBERON:0005743!7.01e-16!86;UBERON:0002616!5.73e-15!59;UBERON:0000955!1.05e-14!69;UBERON:0006238!1.05e-14!69;UBERON:0003080!2.21e-14!42;UBERON:0002780!7.36e-14!41;UBERON:0001890!7.36e-14!41;UBERON:0006240!7.36e-14!41;UBERON:0001893!8.86e-11!34;UBERON:0002020!1.90e-10!34;UBERON:0003528!1.90e-10!34;UBERON:0002346!2.07e-10!90;UBERON:0002791!2.44e-10!33;UBERON:0001869!3.52e-10!32;UBERON:0003075!3.83e-10!86;UBERON:0007284!3.83e-10!86;UBERON:0002619!4.99e-10!22;UBERON:0000956!9.63e-10!25;UBERON:0000203!9.63e-10!25;UBERON:0001950!1.78e-09!20;UBERON:0003056!3.35e-09!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.37e-11;41!UBERON:0001890;2.37e-11;41!UBERON:0000073;4.68e-11;53!UBERON:0002616;4.68e-11;53!UBERON:0002619;1.07e-10;22!UBERON:0000956;2.56e-10;25!UBERON:0000203;2.56e-10;25!UBERON:0001950;3.42e-10;20!UBERON:0001893;5.56e-10;34!UBERON:0001869;1.24e-09;32!UBERON:0002791;1.78e-09;32!UBERON:0003528;2.48e-09;34!UBERON:0002020;2.48e-09;34!UBERON:0000955;6.72e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.33e-18,56;UBERON:0005068,4.33e-18,56;UBERON:0006241,4.33e-18,56;UBERON:0007135,4.33e-18,56;UBERON:0007023,8.94e-18,114;UBERON:0000073,1.95e-17,53;UBERON:0002616,1.95e-17,53;UBERON:0001016,3.15e-17,89;UBERON:0001017,1.26e-16,81;UBERON:0002780,3.74e-15,41;UBERON:0001890,3.74e-15,41;UBERON:0003080,3.74e-15,41;UBERON:0006240,3.74e-15,41;UBERON:0000955,1.05e-14,68;UBERON:0006238,1.05e-14,68;UBERON:0002346,6.16e-12,86;UBERON:0003075,7.46e-12,82;UBERON:0007284,7.46e-12,82;UBERON:0001893,9.90e-12,34;UBERON:0003528,2.30e-11,34;UBERON:0002020,2.30e-11,34;UBERON:0001869,4.59e-11,32;UBERON:0002619,7.08e-11,22;UBERON:0002791,8.32e-11,32;UBERON:0000956,1.45e-10,25;UBERON:0000203,1.45e-10,25;UBERON:0001950,2.93e-10,20;UBERON:0003056,1.37e-09,61;UBERON:0010371,6.08e-07,104 | |||
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| ||
|short_description=p4@CDK13 | |short_description=p4@CDK13 | ||
}} | }} |
Latest revision as of 13:39, 18 September 2015
Short description: | p4@CDK13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDK13_5end |
Coexpression cluster: | NA |
Association with transcript: | -336bp_to_ENST00000181839_5end |
EntrezGene: | CDK13 |
HGNC: | 1733 |
UniProt: | Q14004 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.08e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 8.34e-13 | 120 |
nongranular leukocyte | 1.03e-12 | 115 |
hematopoietic stem cell | 1.51e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.06e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.06e-10 | 161 |
lymphocyte | 2.41e-10 | 53 |
common lymphoid progenitor | 2.41e-10 | 53 |
lymphoid lineage restricted progenitor cell | 5.72e-10 | 52 |
hematopoietic cell | 3.62e-09 | 177 |
mature alpha-beta T cell | 2.78e-08 | 18 |
alpha-beta T cell | 2.78e-08 | 18 |
immature T cell | 2.78e-08 | 18 |
mature T cell | 2.78e-08 | 18 |
immature alpha-beta T cell | 2.78e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
neural tube | 4.33e-18 | 56 |
neural rod | 4.33e-18 | 56 |
future spinal cord | 4.33e-18 | 56 |
neural keel | 4.33e-18 | 56 |
adult organism | 8.94e-18 | 114 |
regional part of nervous system | 1.95e-17 | 53 |
regional part of brain | 1.95e-17 | 53 |
nervous system | 3.15e-17 | 89 |
central nervous system | 1.26e-16 | 81 |
regional part of forebrain | 3.74e-15 | 41 |
forebrain | 3.74e-15 | 41 |
anterior neural tube | 3.74e-15 | 41 |
future forebrain | 3.74e-15 | 41 |
brain | 1.05e-14 | 68 |
future brain | 1.05e-14 | 68 |
neurectoderm | 6.16e-12 | 86 |
neural plate | 7.46e-12 | 82 |
presumptive neural plate | 7.46e-12 | 82 |
telencephalon | 9.90e-12 | 34 |
brain grey matter | 2.30e-11 | 34 |
gray matter | 2.30e-11 | 34 |
cerebral hemisphere | 4.59e-11 | 32 |
regional part of cerebral cortex | 7.08e-11 | 22 |
regional part of telencephalon | 8.32e-11 | 32 |
cerebral cortex | 1.45e-10 | 25 |
pallium | 1.45e-10 | 25 |
neocortex | 2.93e-10 | 20 |
pre-chordal neural plate | 1.37e-09 | 61 |
ecto-epithelium | 6.08e-07 | 104 |