FFCP PHASE1:Hg19::chr2:182756466..182756485,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6744 | |EntrezGene=6744 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11319 | |HGNC=11319 | ||
|TSSclassifier=strong | |||
|UniProt=P28290 | |UniProt=P28290 | ||
|association_with_transcript=0bp_to_NM_001130445,NM_006751,uc002uoh.2,uc002uoi.2,uc002uoj.2,uc002uok.2,uc010zfn.1,uc010zfo.1_5end | |association_with_transcript=0bp_to_NM_001130445,NM_006751,uc002uoh.2,uc002uoi.2,uc002uoj.2,uc002uok.2,uc010zfn.1,uc010zfo.1_5end | ||
|cluster_id=chr2:182756466..182756485,+ | |||
|description=CAGE_peak_6_at_SSFA2_5end | |description=CAGE_peak_6_at_SSFA2_5end | ||
|id=chr2:182756466..182756485,+ | |id=chr2:182756466..182756485,+ | ||
|ontology_enrichment_celltype=CL:0000766!8.77e-12!76;CL:0000860!1.55e-11!45;CL:0002057!4.38e-11!42;CL:0000557!4.01e-09!71;CL:0000738!2.78e-08!140;CL:0000839!8.23e-08!70;CL:0002009!1.83e-07!65;CL:0002194!2.28e-07!63;CL:0000576!2.28e-07!63;CL:0000040!2.28e-07!63;CL:0000559!2.28e-07!63;CL:0000763!3.29e-07!112;CL:0000049!3.29e-07!112 | |ontology_enrichment_celltype=CL:0000766!8.77e-12!76;CL:0000860!1.55e-11!45;CL:0002057!4.38e-11!42;CL:0000557!4.01e-09!71;CL:0000738!2.78e-08!140;CL:0000839!8.23e-08!70;CL:0002009!1.83e-07!65;CL:0002194!2.28e-07!63;CL:0000576!2.28e-07!63;CL:0000040!2.28e-07!63;CL:0000559!2.28e-07!63;CL:0000763!3.29e-07!112;CL:0000049!3.29e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.87e-12;33!CL:0002057;1.87e-12;33!CL:0000473;5.45e-08;39!CL:0000234;5.45e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.54e-11,72;CL:0000860,3.71e-11,42;CL:0002057,3.71e-11,42;CL:0000557,1.57e-08,67;CL:0000473,1.60e-08,48;CL:0000234,1.60e-08,48;CL:0000738,7.98e-08,136;CL:0000839,3.30e-07,66;CL:0002009,6.96e-07,61;CL:0002194,8.68e-07,59;CL:0000576,8.68e-07,59;CL:0000040,8.68e-07,59;CL:0000559,8.68e-07,59;CL:0000763,8.87e-07,108;CL:0000049,8.87e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.05e-09;42!UBERON:0006601;1.94e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.19e-21!115;UBERON:0001049!4.89e-20!57;UBERON:0005068!4.89e-20!57;UBERON:0006241!4.89e-20!57;UBERON:0007135!4.89e-20!57;UBERON:0002346!1.53e-16!90;UBERON:0003075!2.69e-16!86;UBERON:0007284!2.69e-16!86;UBERON:0000073!1.30e-15!94;UBERON:0001016!1.30e-15!94;UBERON:0000955!1.70e-15!69;UBERON:0006238!1.70e-15!69;UBERON:0001017!3.56e-15!82;UBERON:0002616!6.20e-15!59;UBERON:0003080!8.19e-15!42;UBERON:0005743!9.89e-15!86;UBERON:0002780!2.59e-14!41;UBERON:0001890!2.59e-14!41;UBERON:0006240!2.59e-14!41;UBERON:0003056!3.40e-12!61;UBERON:0000153!4.27e-12!129;UBERON:0007811!4.27e-12!129;UBERON:0002020!1.47e-11!34;UBERON:0003528!1.47e-11!34;UBERON:0000033!2.26e-11!123;UBERON:0001893!3.10e-11!34;UBERON:0002791!6.23e-11!33;UBERON:0000924!2.14e-10!173;UBERON:0006601!2.14e-10!173;UBERON:0001869!3.31e-10!32;UBERON:0004121!4.62e-10!169;UBERON:0002390!3.83e-07!102;UBERON:0003061!3.83e-07!102;UBERON:0000956!3.89e-07!25;UBERON:0000203!3.89e-07!25;UBERON:0002619!6.18e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.12e-11;41!UBERON:0001890;6.12e-11;41!UBERON:0000073;1.52e-10;53!UBERON:0002616;1.52e-10;53!UBERON:0003528;7.44e-10;34!UBERON:0002020;7.44e-10;34!UBERON:0002791;1.14e-09;32!UBERON:0001893;1.70e-09;34!UBERON:0001869;1.76e-09;32!UBERON:0000955;1.87e-07;68!UBERON:0001016;2.85e-07;83!UBERON:0000956;5.88e-07;25!UBERON:0000203;5.88e-07;25!UBERON:0001017;6.25e-07;75!UBERON:0002619;8.47e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.45e-21,114;UBERON:0001049,1.67e-19,56;UBERON:0005068,1.67e-19,56;UBERON:0006241,1.67e-19,56;UBERON:0007135,1.67e-19,56;UBERON:0000073,5.96e-18,53;UBERON:0002616,5.96e-18,53;UBERON:0002346,2.37e-16,86;UBERON:0003075,4.10e-16,82;UBERON:0007284,4.10e-16,82;UBERON:0001016,2.26e-15,89;UBERON:0000955,6.71e-15,68;UBERON:0006238,6.71e-15,68;UBERON:0001017,1.67e-14,81;UBERON:0002780,2.94e-14,41;UBERON:0001890,2.94e-14,41;UBERON:0003080,2.94e-14,41;UBERON:0006240,2.94e-14,41;UBERON:0003056,2.04e-12,61;UBERON:0003528,1.73e-11,34;UBERON:0002020,1.73e-11,34;UBERON:0001893,3.65e-11,34;UBERON:0002791,2.06e-10,32;UBERON:0001869,3.94e-10,32;UBERON:0004121,1.07e-09,171;UBERON:0000924,1.07e-09,171;UBERON:0006601,1.07e-09,171;UBERON:0010314,2.90e-09,132;UBERON:0010371,1.93e-08,104;UBERON:0000956,4.74e-07,25;UBERON:0000203,4.74e-07,25;UBERON:0002619,7.64e-07,22 | |||
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| ||
|short_description=p6@SSFA2 | |short_description=p6@SSFA2 | ||
}} | }} |
Latest revision as of 21:33, 18 September 2015
Short description: | p6@SSFA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SSFA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001130445, NM_006751, uc002uoh.2, uc002uoi.2, uc002uoj.2, uc002uok.2, uc010zfn.1, uc010zfo.1_5end |
EntrezGene: | SSFA2 |
HGNC: | 11319 |
UniProt: | P28290 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.54e-11 | 72 |
classical monocyte | 3.71e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.71e-11 | 42 |
granulocyte monocyte progenitor cell | 1.57e-08 | 67 |
defensive cell | 1.60e-08 | 48 |
phagocyte | 1.60e-08 | 48 |
leukocyte | 7.98e-08 | 136 |
myeloid lineage restricted progenitor cell | 3.30e-07 | 66 |
macrophage dendritic cell progenitor | 6.96e-07 | 61 |
monopoietic cell | 8.68e-07 | 59 |
monocyte | 8.68e-07 | 59 |
monoblast | 8.68e-07 | 59 |
promonocyte | 8.68e-07 | 59 |
myeloid cell | 8.87e-07 | 108 |
common myeloid progenitor | 8.87e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.45e-21 | 114 |
neural tube | 1.67e-19 | 56 |
neural rod | 1.67e-19 | 56 |
future spinal cord | 1.67e-19 | 56 |
neural keel | 1.67e-19 | 56 |
regional part of nervous system | 5.96e-18 | 53 |
regional part of brain | 5.96e-18 | 53 |
neurectoderm | 2.37e-16 | 86 |
neural plate | 4.10e-16 | 82 |
presumptive neural plate | 4.10e-16 | 82 |
nervous system | 2.26e-15 | 89 |
brain | 6.71e-15 | 68 |
future brain | 6.71e-15 | 68 |
central nervous system | 1.67e-14 | 81 |
regional part of forebrain | 2.94e-14 | 41 |
forebrain | 2.94e-14 | 41 |
anterior neural tube | 2.94e-14 | 41 |
future forebrain | 2.94e-14 | 41 |
pre-chordal neural plate | 2.04e-12 | 61 |
brain grey matter | 1.73e-11 | 34 |
gray matter | 1.73e-11 | 34 |
telencephalon | 3.65e-11 | 34 |
regional part of telencephalon | 2.06e-10 | 32 |
cerebral hemisphere | 3.94e-10 | 32 |
ectoderm-derived structure | 1.07e-09 | 171 |
ectoderm | 1.07e-09 | 171 |
presumptive ectoderm | 1.07e-09 | 171 |
structure with developmental contribution from neural crest | 2.90e-09 | 132 |
ecto-epithelium | 1.93e-08 | 104 |
cerebral cortex | 4.74e-07 | 25 |
pallium | 4.74e-07 | 25 |
regional part of cerebral cortex | 7.64e-07 | 22 |