FFCP PHASE1:Hg19::chr19:49140609..49140643,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1628 | |EntrezGene=1628 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2697 | |HGNC=2697 | ||
|TSSclassifier=strong | |||
|UniProt=Q10586,Q59HF2 | |UniProt=Q10586,Q59HF2 | ||
|association_with_transcript=0bp_to_ENST00000222122,NM_001352,uc002pjx.3,uc002pjy.2,uc010elz.1_5end | |association_with_transcript=0bp_to_ENST00000222122,NM_001352,uc002pjx.3,uc002pjy.2,uc010elz.1_5end | ||
|cluster_id=chr19:49140609..49140643,- | |||
|coexpression_cluster_id=C3810 | |||
|description=CAGE_peak_1_at_DBP_5end | |description=CAGE_peak_1_at_DBP_5end | ||
|id=chr19:49140609..49140643,- | |id=chr19:49140609..49140643,- | ||
|ontology_enrichment_celltype=CL:0000542!1.27e-08!53;CL:0000051!1.27e-08!53;CL:0000838!1.82e-08!52;CL:0000791!6.45e-08!18;CL:0000789!6.45e-08!18;CL:0002420!6.45e-08!18;CL:0002419!6.45e-08!18;CL:0000790!6.45e-08!18;CL:0000738!8.36e-08!140;CL:0002087!6.65e-07!119;CL:0000037!7.23e-07!172;CL:0000566!7.23e-07!172 | |ontology_enrichment_celltype=CL:0000542!1.27e-08!53;CL:0000051!1.27e-08!53;CL:0000838!1.82e-08!52;CL:0000791!6.45e-08!18;CL:0000789!6.45e-08!18;CL:0002420!6.45e-08!18;CL:0002419!6.45e-08!18;CL:0000790!6.45e-08!18;CL:0000738!8.36e-08!140;CL:0002087!6.65e-07!119;CL:0000037!7.23e-07!172;CL:0000566!7.23e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000791;6.06e-08;18!CL:0000789;6.06e-08;18!CL:0002419;6.06e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.40e-08,53;CL:0000051,1.40e-08,53;CL:0000838,2.02e-08,52;CL:0000791,5.50e-08,18;CL:0000789,5.50e-08,18;CL:0002420,5.50e-08,18;CL:0002419,5.50e-08,18;CL:0000790,5.50e-08,18;CL:0000738,1.33e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;6.06e-08;18!UBERON:0006601;5.22e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.30e-26!115;UBERON:0001049!3.11e-12!57;UBERON:0005068!3.11e-12!57;UBERON:0006241!3.11e-12!57;UBERON:0007135!3.11e-12!57;UBERON:0002780!1.70e-11!41;UBERON:0001890!1.70e-11!41;UBERON:0006240!1.70e-11!41;UBERON:0003080!3.25e-11!42;UBERON:0000955!2.87e-10!69;UBERON:0006238!2.87e-10!69;UBERON:0005743!3.08e-10!86;UBERON:0002346!1.55e-09!90;UBERON:0002616!1.89e-09!59;UBERON:0001017!2.52e-09!82;UBERON:0001893!2.70e-09!34;UBERON:0001869!7.48e-09!32;UBERON:0000073!8.56e-09!94;UBERON:0001016!8.56e-09!94;UBERON:0002791!8.74e-09!33;UBERON:0003075!9.92e-09!86;UBERON:0007284!9.92e-09!86;UBERON:0002020!1.61e-08!34;UBERON:0003528!1.61e-08!34;UBERON:0002619!5.63e-08!22;UBERON:0001950!1.07e-07!20;UBERON:0003056!2.10e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.03e-08;41!UBERON:0001890;2.03e-08;41!UBERON:0001893;3.08e-08;34!UBERON:0001869;4.53e-08;32!UBERON:0002619;4.82e-08;22!UBERON:0001950;8.72e-08;20!UBERON:0002791;9.67e-08;32!UBERON:0007023;1.68e-07;114!UBERON:0003528;1.69e-07;34!UBERON:0002020;1.69e-07;34!UBERON:0000073;2.52e-07;53!UBERON:0002616;2.52e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.60e-27,114;UBERON:0001049,1.63e-12,56;UBERON:0005068,1.63e-12,56;UBERON:0006241,1.63e-12,56;UBERON:0007135,1.63e-12,56;UBERON:0000073,2.01e-12,53;UBERON:0002616,2.01e-12,53;UBERON:0002780,1.59e-11,41;UBERON:0001890,1.59e-11,41;UBERON:0003080,1.59e-11,41;UBERON:0006240,1.59e-11,41;UBERON:0000955,2.31e-10,68;UBERON:0006238,2.31e-10,68;UBERON:0001017,2.43e-09,81;UBERON:0001893,2.65e-09,34;UBERON:0001869,7.41e-09,32;UBERON:0002346,1.04e-08,86;UBERON:0003528,1.60e-08,34;UBERON:0002020,1.60e-08,34;UBERON:0002791,2.19e-08,32;UBERON:0002619,4.79e-08,22;UBERON:0001016,5.12e-08,89;UBERON:0003075,6.43e-08,82;UBERON:0007284,6.43e-08,82;UBERON:0001950,9.21e-08,20;UBERON:0003056,3.99e-07,61 | |||
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| ||
|short_description=p1@DBP | |short_description=p1@DBP | ||
}} | }} |
Latest revision as of 03:30, 19 September 2015
Short description: | p1@DBP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DBP_5end |
Coexpression cluster: | C3810_carcinoid_retina_temporal_brain_salivary_occipital_CD4 |
Association with transcript: | 0bp_to_ENST00000222122, NM_001352, uc002pjx.3, uc002pjy.2, uc010elz.1_5end |
EntrezGene: | DBP |
HGNC: | 2697 |
UniProt: | Q10586Q59HF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.40e-08 | 53 |
common lymphoid progenitor | 1.40e-08 | 53 |
lymphoid lineage restricted progenitor cell | 2.02e-08 | 52 |
mature alpha-beta T cell | 5.50e-08 | 18 |
alpha-beta T cell | 5.50e-08 | 18 |
immature T cell | 5.50e-08 | 18 |
mature T cell | 5.50e-08 | 18 |
immature alpha-beta T cell | 5.50e-08 | 18 |
leukocyte | 1.33e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.60e-27 | 114 |
neural tube | 1.63e-12 | 56 |
neural rod | 1.63e-12 | 56 |
future spinal cord | 1.63e-12 | 56 |
neural keel | 1.63e-12 | 56 |
regional part of nervous system | 2.01e-12 | 53 |
regional part of brain | 2.01e-12 | 53 |
regional part of forebrain | 1.59e-11 | 41 |
forebrain | 1.59e-11 | 41 |
anterior neural tube | 1.59e-11 | 41 |
future forebrain | 1.59e-11 | 41 |
brain | 2.31e-10 | 68 |
future brain | 2.31e-10 | 68 |
central nervous system | 2.43e-09 | 81 |
telencephalon | 2.65e-09 | 34 |
cerebral hemisphere | 7.41e-09 | 32 |
neurectoderm | 1.04e-08 | 86 |
brain grey matter | 1.60e-08 | 34 |
gray matter | 1.60e-08 | 34 |
regional part of telencephalon | 2.19e-08 | 32 |
regional part of cerebral cortex | 4.79e-08 | 22 |
nervous system | 5.12e-08 | 89 |
neural plate | 6.43e-08 | 82 |
presumptive neural plate | 6.43e-08 | 82 |
neocortex | 9.21e-08 | 20 |
pre-chordal neural plate | 3.99e-07 | 61 |