FFCP PHASE1:Hg19::chr4:926048..926066,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:926048..926066,-
|short_description=p2@GAK
|description=CAGE_peak_2_at_GAK_5end
|association_with_transcript=15bp_to_ENST00000398567_5end
|EntrezGene=2580...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2580 | |EntrezGene=2580 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4113 | |HGNC=4113 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P490 | |UniProt=Q6P490 | ||
|association_with_transcript=15bp_to_ENST00000398567_5end | |||
|cluster_id=chr4:926048..926066,- | |||
|description=CAGE_peak_2_at_GAK_5end | |||
|id=chr4:926048..926066,- | |||
|ontology_enrichment_celltype=CL:0000988!1.10e-29!182;CL:0000037!3.58e-28!172;CL:0000566!3.58e-28!172;CL:0000738!3.75e-28!140;CL:0002032!1.18e-26!165;CL:0000837!1.18e-26!165;CL:0000763!1.13e-23!112;CL:0000049!1.13e-23!112;CL:0000766!1.74e-22!76;CL:0002087!3.24e-21!119;CL:0002057!8.38e-21!42;CL:0000557!1.28e-19!71;CL:0002031!1.55e-19!124;CL:0002009!1.66e-19!65;CL:0002194!1.37e-18!63;CL:0000576!1.37e-18!63;CL:0000040!1.37e-18!63;CL:0000559!1.37e-18!63;CL:0000860!8.53e-18!45;CL:0000839!9.26e-17!70;CL:0000115!1.60e-09!35;CL:0002139!1.87e-07!24;CL:0002078!2.57e-07!44;CL:0000451!5.33e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.51e-17;33!CL:0002057;6.51e-17;33!CL:0000473;5.73e-16;39!CL:0000234;5.73e-16;39!CL:0000576;7.18e-13;48!CL:0000766;6.36e-11;69!CL:0000115;1.17e-08;36!CL:0000763;1.01e-07;100!CL:0000738;1.26e-07;136!CL:0002139;1.41e-07;24!CL:0002087;3.11e-07;104!CL:0000451;5.00e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.80e-31,177;CL:0000738,1.07e-30,136;CL:0000037,2.08e-30,168;CL:0002032,7.19e-29,161;CL:0000837,7.19e-29,161;CL:0000763,2.67e-26,108;CL:0000049,2.67e-26,108;CL:0000766,8.49e-26,72;CL:0002087,1.45e-23,115;CL:0000473,6.19e-23,48;CL:0000234,6.19e-23,48;CL:0002009,7.35e-23,61;CL:0000557,8.81e-23,67;CL:0002194,6.67e-22,59;CL:0000576,6.67e-22,59;CL:0000040,6.67e-22,59;CL:0000559,6.67e-22,59;CL:0002031,1.06e-21,120;CL:0000860,8.34e-21,42;CL:0002057,8.34e-21,42;CL:0000839,1.28e-19,66;CL:0000115,6.41e-10,36;CL:0002078,1.20e-07,45;CL:0002139,1.87e-07,24;CL:0000451,5.32e-07,10;CL:0000134,9.80e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.52e-15;42!CL:0000049;6.62e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.63e-26!112;UBERON:0002390!1.09e-23!102;UBERON:0003061!1.09e-23!102;UBERON:0003081!9.29e-21!216;UBERON:0002405!1.69e-19!115;UBERON:0002371!1.10e-16!80;UBERON:0001474!4.05e-15!86;UBERON:0004765!2.51e-11!101;UBERON:0001434!2.51e-11!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.97e-29,108;UBERON:0002390,1.72e-26,98;UBERON:0003061,1.72e-26,98;UBERON:0002405,1.33e-23,93;UBERON:0003081,2.93e-22,203;UBERON:0002371,2.76e-19,76;UBERON:0001474,1.89e-17,82;UBERON:0004765,8.04e-15,90;UBERON:0001434,1.75e-11,100 | |||
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| ||
|short_description=p2@GAK | |||
}} | }} |
Latest revision as of 09:18, 19 September 2015
Short description: | p2@GAK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GAK_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000398567_5end |
EntrezGene: | GAK |
HGNC: | 4113 |
UniProt: | Q6P490 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.80e-31 | 177 |
leukocyte | 1.07e-30 | 136 |
hematopoietic stem cell | 2.08e-30 | 168 |
hematopoietic oligopotent progenitor cell | 7.19e-29 | 161 |
hematopoietic multipotent progenitor cell | 7.19e-29 | 161 |
myeloid cell | 2.67e-26 | 108 |
common myeloid progenitor | 2.67e-26 | 108 |
myeloid leukocyte | 8.49e-26 | 72 |
nongranular leukocyte | 1.45e-23 | 115 |
defensive cell | 6.19e-23 | 48 |
phagocyte | 6.19e-23 | 48 |
macrophage dendritic cell progenitor | 7.35e-23 | 61 |
granulocyte monocyte progenitor cell | 8.81e-23 | 67 |
monopoietic cell | 6.67e-22 | 59 |
monocyte | 6.67e-22 | 59 |
monoblast | 6.67e-22 | 59 |
promonocyte | 6.67e-22 | 59 |
hematopoietic lineage restricted progenitor cell | 1.06e-21 | 120 |
classical monocyte | 8.34e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.34e-21 | 42 |
myeloid lineage restricted progenitor cell | 1.28e-19 | 66 |
endothelial cell | 6.41e-10 | 36 |
meso-epithelial cell | 1.20e-07 | 45 |
endothelial cell of vascular tree | 1.87e-07 | 24 |
dendritic cell | 5.32e-07 | 10 |
mesenchymal cell | 9.80e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.97e-29 | 108 |
hematopoietic system | 1.72e-26 | 98 |
blood island | 1.72e-26 | 98 |
immune system | 1.33e-23 | 93 |
lateral plate mesoderm | 2.93e-22 | 203 |
bone marrow | 2.76e-19 | 76 |
bone element | 1.89e-17 | 82 |
skeletal element | 8.04e-15 | 90 |
skeletal system | 1.75e-11 | 100 |