FFCP PHASE1:Hg19::chr10:86088381..86088436,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:86088381..86088436,+
|short_description=p1@FAM190B
|description=CAGE_peak_1_at_FAM190B_5end
|association_with_transcript=0bp_to_ENST00000224756,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54462 | |EntrezGene=54462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29197 | |HGNC=29197 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H7U1 | |UniProt=Q9H7U1 | ||
|association_with_transcript=0bp_to_ENST00000224756,ENST00000372088,NM_018999,uc001kdg.1,uc001kdh.1,uc010qmd.1_5end | |||
|cluster_id=chr10:86088381..86088436,+ | |||
|description=CAGE_peak_1_at_FAM190B_5end | |||
|id=chr10:86088381..86088436,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.56e-13!42;CL:0000860!3.95e-11!45;CL:0000766!1.44e-10!76;CL:0000738!3.54e-09!140;CL:0002009!4.97e-09!65;CL:0000557!1.68e-08!71;CL:0002194!2.04e-08!63;CL:0000576!2.04e-08!63;CL:0000040!2.04e-08!63;CL:0000559!2.04e-08!63;CL:0002087!4.33e-07!119;CL:0000791!6.66e-07!18;CL:0000789!6.66e-07!18;CL:0002420!6.66e-07!18;CL:0002419!6.66e-07!18;CL:0000790!6.66e-07!18;CL:0000839!9.17e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.34e-13;33!CL:0002057;9.34e-13;33!CL:0000473;1.14e-09;39!CL:0000234;1.14e-09;39!CL:0000576;4.48e-07;48!CL:0000791;6.22e-07;18!CL:0000789;6.22e-07;18!CL:0002419;6.22e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.56e-13,42;CL:0002057,5.56e-13,42;CL:0000473,6.23e-12,48;CL:0000234,6.23e-12,48;CL:0000766,2.55e-11,72;CL:0002009,8.89e-10,61;CL:0000738,1.45e-09,136;CL:0000557,3.73e-09,67;CL:0002194,3.90e-09,59;CL:0000576,3.90e-09,59;CL:0000040,3.90e-09,59;CL:0000559,3.90e-09,59;CL:0002087,1.92e-07,115;CL:0000839,2.69e-07,66;CL:0000791,6.66e-07,18;CL:0000789,6.66e-07,18;CL:0002420,6.66e-07,18;CL:0002419,6.66e-07,18;CL:0000790,6.66e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;5.81e-10;42!CL:0000790;6.22e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.89e-15!115;UBERON:0001049!1.32e-13!57;UBERON:0005068!1.32e-13!57;UBERON:0006241!1.32e-13!57;UBERON:0007135!1.32e-13!57;UBERON:0002616!7.16e-12!59;UBERON:0001017!1.40e-11!82;UBERON:0000955!1.53e-11!69;UBERON:0006238!1.53e-11!69;UBERON:0003080!5.42e-11!42;UBERON:0002780!1.57e-10!41;UBERON:0001890!1.57e-10!41;UBERON:0006240!1.57e-10!41;UBERON:0005743!2.97e-10!86;UBERON:0000073!4.68e-10!94;UBERON:0001016!4.68e-10!94;UBERON:0002020!6.64e-09!34;UBERON:0003528!6.64e-09!34;UBERON:0001893!2.06e-08!34;UBERON:0000153!2.26e-08!129;UBERON:0007811!2.26e-08!129;UBERON:0001869!3.66e-08!32;UBERON:0002791!4.17e-08!33;UBERON:0002390!1.10e-07!102;UBERON:0003061!1.10e-07!102;UBERON:0000033!2.02e-07!123;UBERON:0003075!3.66e-07!86;UBERON:0007284!3.66e-07!86;UBERON:0002619!5.10e-07!22;UBERON:0000062!5.82e-07!511;UBERON:0000956!5.99e-07!25;UBERON:0000203!5.99e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.05e-08;41!UBERON:0001890;8.05e-08;41!UBERON:0003528;1.16e-07;34!UBERON:0002020;1.16e-07;34!UBERON:0001869;1.61e-07;32!UBERON:0002791;2.20e-07;32!UBERON:0000073;3.82e-07;53!UBERON:0002616;3.82e-07;53!UBERON:0001893;4.11e-07;34!UBERON:0002619;5.50e-07;22!UBERON:0000956;6.73e-07;25!UBERON:0000203;6.73e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.52e-15,114;UBERON:0001049,3.83e-13,56;UBERON:0005068,3.83e-13,56;UBERON:0006241,3.83e-13,56;UBERON:0007135,3.83e-13,56;UBERON:0000073,5.11e-12,53;UBERON:0002616,5.11e-12,53;UBERON:0001017,3.49e-11,81;UBERON:0000955,3.99e-11,68;UBERON:0006238,3.99e-11,68;UBERON:0001016,6.72e-11,89;UBERON:0002780,1.57e-10,41;UBERON:0001890,1.57e-10,41;UBERON:0003080,1.57e-10,41;UBERON:0006240,1.57e-10,41;UBERON:0003528,6.64e-09,34;UBERON:0002020,6.64e-09,34;UBERON:0001893,2.06e-08,34;UBERON:0001869,3.66e-08,32;UBERON:0002390,4.00e-08,98;UBERON:0003061,4.00e-08,98;UBERON:0002791,4.66e-08,32;UBERON:0003075,8.48e-08,82;UBERON:0007284,8.48e-08,82;UBERON:0002619,5.10e-07,22;UBERON:0000956,5.98e-07,25;UBERON:0000203,5.98e-07,25;UBERON:0002193,8.65e-07,108 | |||
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| ||
|short_description=p1@FAM190B | |||
}} | }} |
Latest revision as of 16:57, 19 September 2015
Short description: | p1@FAM190B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM190B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000224756, ENST00000372088, NM_018999, uc001kdg.1, uc001kdh.1, uc010qmd.1_5end |
EntrezGene: | FAM190B |
HGNC: | 29197 |
UniProt: | Q9H7U1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.56e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.56e-13 | 42 |
defensive cell | 6.23e-12 | 48 |
phagocyte | 6.23e-12 | 48 |
myeloid leukocyte | 2.55e-11 | 72 |
macrophage dendritic cell progenitor | 8.89e-10 | 61 |
leukocyte | 1.45e-09 | 136 |
granulocyte monocyte progenitor cell | 3.73e-09 | 67 |
monopoietic cell | 3.90e-09 | 59 |
monocyte | 3.90e-09 | 59 |
monoblast | 3.90e-09 | 59 |
promonocyte | 3.90e-09 | 59 |
nongranular leukocyte | 1.92e-07 | 115 |
myeloid lineage restricted progenitor cell | 2.69e-07 | 66 |
mature alpha-beta T cell | 6.66e-07 | 18 |
alpha-beta T cell | 6.66e-07 | 18 |
immature T cell | 6.66e-07 | 18 |
mature T cell | 6.66e-07 | 18 |
immature alpha-beta T cell | 6.66e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.52e-15 | 114 |
neural tube | 3.83e-13 | 56 |
neural rod | 3.83e-13 | 56 |
future spinal cord | 3.83e-13 | 56 |
neural keel | 3.83e-13 | 56 |
regional part of nervous system | 5.11e-12 | 53 |
regional part of brain | 5.11e-12 | 53 |
central nervous system | 3.49e-11 | 81 |
brain | 3.99e-11 | 68 |
future brain | 3.99e-11 | 68 |
nervous system | 6.72e-11 | 89 |
regional part of forebrain | 1.57e-10 | 41 |
forebrain | 1.57e-10 | 41 |
anterior neural tube | 1.57e-10 | 41 |
future forebrain | 1.57e-10 | 41 |
brain grey matter | 6.64e-09 | 34 |
gray matter | 6.64e-09 | 34 |
telencephalon | 2.06e-08 | 34 |
cerebral hemisphere | 3.66e-08 | 32 |
hematopoietic system | 4.00e-08 | 98 |
blood island | 4.00e-08 | 98 |
regional part of telencephalon | 4.66e-08 | 32 |
neural plate | 8.48e-08 | 82 |
presumptive neural plate | 8.48e-08 | 82 |
regional part of cerebral cortex | 5.10e-07 | 22 |
cerebral cortex | 5.98e-07 | 25 |
pallium | 5.98e-07 | 25 |
hemolymphoid system | 8.65e-07 | 108 |