FFCP PHASE1:Hg19::chr3:123411191..123411236,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:123411191..123411236,- to FFCP PHASE1:Hg19::chr3:123411191..123411236,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4638 | |EntrezGene=4638 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7590 | |HGNC=7590 | ||
|TSSclassifier=strong | |||
|UniProt=B4DUE3,D6R9C2 | |UniProt=B4DUE3,D6R9C2 | ||
|association_with_transcript=0bp_to_ENST00000354792,ENST00000508240,uc011bjv.1_5end | |||
|cluster_id=chr3:123411191..123411236,- | |||
|description=CAGE_peak_6_at_MYLK_5end | |||
|id=chr3:123411191..123411236,- | |||
|ontology_enrichment_celltype=CL:0002139!6.36e-16!24;CL:0000222!1.74e-14!119;CL:0000115!4.31e-13!35;CL:0000071!1.52e-11!18;CL:0002546!1.52e-11!18;CL:0002078!2.00e-10!44;CL:0000213!2.27e-10!57;CL:0000215!2.27e-10!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.58e-23;24!CL:0000115;1.06e-18;36!CL:0000071;2.46e-16;18!CL:0002078;4.21e-11;45!CL:0000213;1.09e-09;58!CL:0000215;1.09e-09;58!CL:1000413;1.77e-08;9!CL:0002138;3.69e-08;6!CL:0002543;8.16e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.70e-23,24;CL:0000115,6.82e-22,36;CL:0002078,1.03e-16,45;CL:0000222,1.29e-16,121;CL:0000071,2.40e-16,18;CL:0002546,2.40e-16,18;CL:0000213,9.22e-16,58;CL:0000215,9.22e-16,58;CL:1000413,1.97e-08,9;CL:0005020,3.87e-08,6;CL:0002138,3.87e-08,6;CL:0005022,3.87e-08,6;CL:0002543,7.19e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.46e-16;18!CL:0005022;3.69e-08;6 | |||
|ontology_enrichment_disease=DOID:2394!1.45e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.01e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.82e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001009!5.53e-28!113;UBERON:0004535!1.22e-27!110;UBERON:0002049!3.14e-20!79;UBERON:0007798!3.14e-20!79;UBERON:0000055!7.18e-20!69;UBERON:0004872!2.14e-17!84;UBERON:0001981!3.47e-17!60;UBERON:0007500!3.47e-17!60;UBERON:0004537!3.47e-17!60;UBERON:0006965!3.47e-17!60;UBERON:0007023!3.99e-16!115;UBERON:0003914!2.92e-12!118;UBERON:0001986!1.52e-11!18;UBERON:0004638!1.52e-11!18;UBERON:0004852!1.52e-11!18;UBERON:0001637!2.05e-10!42;UBERON:0003509!2.05e-10!42;UBERON:0004572!2.05e-10!42;UBERON:0004573!6.33e-09!33;UBERON:0004571!6.33e-09!33;UBERON:0000025!6.47e-09!194;UBERON:0004111!3.84e-08!241;UBERON:0000487!8.34e-08!22;UBERON:0000477!1.73e-07!286;UBERON:0003081!3.38e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.46e-16;18!UBERON:0001986;2.46e-16;18!UBERON:0004852;2.46e-16;18!UBERON:0000487;3.44e-12;22!UBERON:0000055;5.71e-11;65!UBERON:0006914;5.40e-10;25!UBERON:0000178;9.62e-10;15!UBERON:0000179;9.62e-10;15!UBERON:0000463;9.62e-10;15!UBERON:0007500;9.88e-10;56!UBERON:0001981;9.88e-10;56!UBERON:0004537;9.88e-10;56!UBERON:0001637;3.06e-09;42!UBERON:0003509;3.06e-09;42!UBERON:0004572;3.06e-09;42!UBERON:0004573;4.74e-09;33!UBERON:0004571;4.74e-09;33!UBERON:0003915;1.77e-08;9!UBERON:0004700;1.77e-08;9!UBERON:0001917;1.77e-08;9!UBERON:0002049;2.33e-08;75!UBERON:0007798;2.33e-08;75!UBERON:0004535;8.66e-08;109!UBERON:0002193;2.01e-07;42!UBERON:0001009;2.22e-07;112!UBERON:0003914;5.01e-07;74!UBERON:0000490;5.81e-07;33!UBERON:0002465;8.76e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,3.46e-25,109;UBERON:0001009,7.48e-25,112;UBERON:0000055,9.57e-22,68;UBERON:0002049,9.90e-20,78;UBERON:0007798,9.90e-20,78;UBERON:0007500,3.41e-18,59;UBERON:0001981,3.41e-18,59;UBERON:0004537,3.41e-18,59;UBERON:0006965,3.41e-18,59;UBERON:0004638,2.40e-16,18;UBERON:0001986,2.40e-16,18;UBERON:0004852,2.40e-16,18;UBERON:0004872,2.62e-15,83;UBERON:0000487,3.37e-12,22;UBERON:0003914,5.13e-12,117;UBERON:0000926,4.10e-11,315;UBERON:0004120,4.10e-11,315;UBERON:0006603,4.10e-11,315;UBERON:0001637,2.40e-10,42;UBERON:0003509,2.40e-10,42;UBERON:0004572,2.40e-10,42;UBERON:0006914,5.30e-10,25;UBERON:0000178,8.56e-10,15;UBERON:0000179,8.56e-10,15;UBERON:0000463,8.56e-10,15;UBERON:0004573,9.64e-10,33;UBERON:0004571,9.64e-10,33;UBERON:0003081,4.87e-09,203;UBERON:0003915,1.97e-08,9;UBERON:0004700,1.97e-08,9;UBERON:0001917,1.97e-08,9;UBERON:0000490,3.04e-07,148;UBERON:0002465,8.50e-07,10 | |||
|phase1_expression=1.63510541343501,1.49870366723688,0.704772020479856,0,0,0.872338524100369,0,1.26343974685366,0,0,0,0,0,0.123766352960047,0,2.01697543935533,2.41077811209591,3.65155045193687,1.46379839637152,0.246242116153576,0,0,0.286235987131057,0.136874425072884,0,0,0,0,1.18009283054671,3.45446458287491,0.619264493264304,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0.28769239232215,1.0246428261164,0,0.344745680736619,0.645484683583826,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,1.21079900526674,1.10483290796269,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.63841583378639,0.889509253863555,0,0,2.29900975981793,0.661044872784862,0,0,0,0,5.28685314316103,3.36305137788922,3.16060901730092,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.144846518960824,0.795285947051099,0,0.756278537312543,0.886917589850256,0.790513071238134,7.33482822787191,0,0,0.97364218096405,0.174129737299267,0.26591592103773,0,0,0,4.96906018416763,3.4409383804245,3.47140501607594,3.39184765154406,4.61449379830897,3.02629846134074,6.47884396264113,25.0664256394249,29.1728335403102,14.0582657361161,6.8480983908555,9.12326526862215,6.83373761134875,9.19157700864672,5.67099363517232,9.2871717415443,11.6755273765608,14.4142695018652,1.53316637465883,11.3911879148175,10.2592976601028,0,3.87780264148325,0,0.496971951695318,3.03913227994991,0.662045904066094,0.286836620748814,0.354668382198357,0.560677600142307,2.1349799145941,3.7000132262574,0.311211035399766,1.21239604862719,0.817309515567294,0.302714855289863,0,0,1.24864030732128,2.85235910772225,1.34503812496621,0.117434498643765,0,0,0,0,0.103325781175765,0,0.494533858557114,0.910161361938026,0,0,0.125118519871964,0.277064115484183,0,0.612975591598039,0.600952235626387,0.680593098960126,0,0,0.635795703478686,0,0.309157587715317,0.515281080091258,0.18611685633159,0.506328996723799,1.16924406193438,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,4.69348596989448,1.28648187638577,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,30.2643736396106,4.20725321410337,0,0,0,0,1.77236972004421,0,0,0.686271241194102,0,0,0,0,0,0,0,0,1.40890433082986,35.9472454925074,37.0388410061289,27.2063437695476,0,0,0.492434012174795,5.14809383306323,2.97262324577457,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0.126995788584338,0,0,0,0,0,0,3.47606361470618,0.87192013766656,5.5737097223922,3.49033632546,0,4.22651376278,1.06375246633948,2.08014873822732,0.257207374262142,0,0,0,0,0,6.5147236858747,0,0,4.82303003295338,4.35766729300147,1.29964888536674,0,0.502257091432126,0,10.5434936416296,1.14861935834114,2.85273810081437,11.1481606134036,8.21905290201534,17.5479743975098,0,0,0,0,0.76228387266739,0,0,0,0,2.99602809578873,11.966458368161,7.87389475528467,0,0,0,4.78332981520856,0.178428988797162,1.57702415033935,2.10854546986884,0.300946099727719,0,0,1.99267679560631,1.10621501125022,0.347534457872331,0.391602314925481,0.343143423810856,2.89475236572042,2.80428461064202,2.24127871387233,0,0,0,0.992431231275107,0.767309866440312,1.40330047216537,1.40953064181271,0.511707249066704,0.482561763430822,0,0.925258162815933,1.9531789784444,0.246381468041427,1.55776328755086,0.116210378459959,0,0,0,0.114814448164607,0.546273504020151,0.131124414959424,0,0.15403067420883,0,0,0,22.7466768141793,25.1738683809243,8.42072072798343,7.71136263451447,0.270946437543853,1.00337954770971,0,0.831076008928724,0,2.63111851975121,1.3071772551245,0,0,0.976135183992909,14.116618595738,0.27470839445503,0,1.14853107599234,0,0,0.290012154876366,0.462145851343933,0.307007349452259,0.689182862422653,0,0.290033387828457,0.93749290157711,0.801288320820636,0,0,0,0,0,0.31481234683064,0,2.15623506123262,2.66153015158511,0.869932992075073,3.7064843820784,1.5743737541619,4.46590043231601,1.58189712359363,1.90630193923825,0,0,0.318203247925937,2.35484592059769,0.179872457583315,0,0,4.65019707618627,1.58510321173008,1.26377536871694,0,1.46228093778771,1.05650146756755,0.409499734223957,0,0,0,3.98063385144732,4.82295973779139,0,0,1.21746226177622,0.92947049429925,1.12678241012897,0.143411352204052,0,0.35667105148125,2.12856638442359,0.844430541190656,0,0,0,0,0.670302275535787,0,13.5567073118562,0,0,0,0,46.6851800493596,45.1135952214001,43.8628334124105,20.4879326893699,19.7453891081373,46.0416050946829,38.3422320439062,46.0012602250677,0,0,0,0,0,0,0,0,0,31.1160166604108,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,19.2100259987717,0,41.9206301637774,25.6465415358321,12.6888304579065,0,8.35096621849796,0,0.111443384277478,0,0,0,0,0.994147647766298,0.140669416410513,0.111308705022906,0,0,3.18796781201712,2.76283915531148,0,0.511343412510774,0,0.622079175323615,0,0,0,1.479651084554,33.5276329285716,0,0,0.371072392647405,0,0,0,7.97499532978273,0,0,0,0,0,0,0.885741385813839,0.2411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| ||
|short_description=p6@MYLK | |||
}} | }} |
Latest revision as of 01:31, 20 September 2015
Short description: | p6@MYLK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MYLK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354792, ENST00000508240, uc011bjv.1_5end |
EntrezGene: | MYLK |
HGNC: | 7590 |
UniProt: | B4DUE3D6R9C2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.70e-23 | 24 |
endothelial cell | 6.82e-22 | 36 |
meso-epithelial cell | 1.03e-16 | 45 |
mesodermal cell | 1.29e-16 | 121 |
blood vessel endothelial cell | 2.40e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.40e-16 | 18 |
lining cell | 9.22e-16 | 58 |
barrier cell | 9.22e-16 | 58 |
endothelial cell of artery | 1.97e-08 | 9 |
lymphangioblast | 3.87e-08 | 6 |
endothelial cell of lymphatic vessel | 3.87e-08 | 6 |
vascular lymphangioblast | 3.87e-08 | 6 |
vein endothelial cell | 7.19e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 3.46e-25 | 109 |
circulatory system | 7.48e-25 | 112 |
vessel | 9.57e-22 | 68 |
vasculature | 9.90e-20 | 78 |
vascular system | 9.90e-20 | 78 |
epithelial tube open at both ends | 3.41e-18 | 59 |
blood vessel | 3.41e-18 | 59 |
blood vasculature | 3.41e-18 | 59 |
vascular cord | 3.41e-18 | 59 |
blood vessel endothelium | 2.40e-16 | 18 |
endothelium | 2.40e-16 | 18 |
cardiovascular system endothelium | 2.40e-16 | 18 |
splanchnic layer of lateral plate mesoderm | 2.62e-15 | 83 |
simple squamous epithelium | 3.37e-12 | 22 |
epithelial tube | 5.13e-12 | 117 |
mesoderm | 4.10e-11 | 315 |
mesoderm-derived structure | 4.10e-11 | 315 |
presumptive mesoderm | 4.10e-11 | 315 |
artery | 2.40e-10 | 42 |
arterial blood vessel | 2.40e-10 | 42 |
arterial system | 2.40e-10 | 42 |
squamous epithelium | 5.30e-10 | 25 |
blood | 8.56e-10 | 15 |
haemolymphatic fluid | 8.56e-10 | 15 |
organism substance | 8.56e-10 | 15 |
systemic artery | 9.64e-10 | 33 |
systemic arterial system | 9.64e-10 | 33 |
lateral plate mesoderm | 4.87e-09 | 203 |
endothelial tube | 1.97e-08 | 9 |
arterial system endothelium | 1.97e-08 | 9 |
endothelium of artery | 1.97e-08 | 9 |
unilaminar epithelium | 3.04e-07 | 148 |
lymphoid system | 8.50e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.82e-10 | 14 |